BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893546
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16330.1 | Symbols: | NC domain-containing protein-related ... 1114 0.0
AT5G16360.1 | Symbols: | NC domain-containing protein-related ... 366 1e-100
> AT5G16330.1 | Symbols: | NC domain-containing protein-related
| chr5:5346163-5346977 REVERSE LENGTH=729
Length=729
Score = 1114 bits (603), Expect = 0.0
Identities = 687/728 (94%), Gaps = 3/728 (0%)
Strand=Plus/Plus
Query 4 GGA-TCCCACTTTCTAGAGAAGATGGGATTTATCTCCAACCAAATCTCCAGAGATGAACT 62
||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||||
Sbjct 3 GGATTCCCACTTTCTGGAGAAGATAGGATTTATCTCAAACCAAATCTCCAGAGATAAACT 62
Query 63 CAAGGCAGGAGATCACATCTATTCATGGCGTAACGCTTATATCTACTCTCATCACGGAAT 122
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TAAACCAGGAGATCACATCTATTCATGGCGTAACGCTTATATCTACTCTCATCACGGAAT 122
Query 123 ATATATAGGCGATGAGAAAGTCATTCATTTCACTTGTGGAGGTGGTCTAGAAACTGGAAC 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 ATATATAGGCGATGAGAAAGTCATTCATTTCACTTGTGGAGGTGGTCTAGAAACTGGAAC 182
Query 183 CGGGACCTTCTTGGACAAGATCCTCGTTAGTGTAATCCCGAATCATAAAGGAGACAATCC 242
||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||
Sbjct 183 TGGGACCTTCTTGGACAAGATCGTCGTTAGTGTCATCCCTAATCATAAAGGAGACAATCC 242
Query 243 TTGTCCTAATTGTGGAGAGCGATCGAATGTCGATGGTGTAATCTCTTCATGCCTTGACTG 302
|||| ||||||||| ||||| || |||| |||| |||||||||||||| |||||||||||
Sbjct 243 TTGTTCTAATTGTGAAGAGCAATTGAATCTCGAAGGTGTAATCTCTTCTTGCCTTGACTG 302
Query 303 CTTTCTCTCCGGAGGAAACATCTATCTCTTT-GAGAACAGTGTCTCTCCAGCTGCATTTA 361
||||||| ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||
Sbjct 303 CTTTCTCGCCGGAGGAAACATCTATCT-TTTCGAGTACAGTGTCTCTCCAGCTGCATTTA 361
Query 362 TTGCCAAACCTCGACGCGGCACATGCACAATAGCACCTTCGGATCCCTGTGATGAAGTCA 421
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 362 TCGCCAAACCTCGACGCGGCACATGCACTATAGCACCTTCGGATCCCTGCGATGAAGTCA 421
Query 422 TTTCCCGCGCCAAATACCTCTTATTCCGGAATGGGTTTGGTGATTACCACGCTTTGGAAA 481
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 422 TTTCCCGCGCCAAATACCTCTTATTGCGGAATGGGTTTGGTGATTACCATGCTTTGGAAA 481
Query 482 ATAATTGTGAAGATTTTGCAATATATTGTAAAACTAGCTTGCTGGTCGGAAAAAACTATG 541
| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 482 ACAATTGTGAAGATTTTGCAATATATTGTAAAACAAGCTTGCTGGTCGGAAAAGACTATG 541
Query 542 TGTTGGGAAGGGGAGGTCAAGCCAGCTCGGTTAGTGCAGCTGCGTGGCTTGCGCAACTTA 601
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 542 TGTTGGGAAGGGGCGGTCAAGCCAGCTCAGTGAGTGCAGCTGCGTGGCTTGCGCAACTTA 601
Query 602 GTCCTTTCGGCAGCAAAGCTATTCAGCTCTTTGCAGATATTGGTGTGAGAAAGGATGCTA 661
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 602 GTCCTTTCGGCAGCAAAGCTATTCAGCTATTTGCAGATATTGGTATGAGAAAGGATGCTA 661
Query 662 TTAGGGTGCCCGTGGAAAGCCTCGTTGCTCGCGCATATGCTACTGGTACCTCTAGAAATA 721
||| ||||||||| || ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 662 TTAAGGTGCCCGTCGAGAGCCTCGTTCCTCGCGCATATGCTACTGGTACCTCTAGAAATA 721
Query 722 GAAGTTGA 729
|||| |||
Sbjct 722 GAAGGTGA 729
> AT5G16360.1 | Symbols: | NC domain-containing protein-related
| chr5:5355082-5356300 REVERSE LENGTH=1111
Length=1111
Score = 366 bits (198), Expect = 1e-100
Identities = 415/516 (80%), Gaps = 30/516 (6%)
Strand=Plus/Plus
Query 16 CTAGAGAAGATGGGATT-TATCTCCAACCAA-ATCTCCAGAGATGAACTCAAGGCAGGAG 73
||| ||||||||||||| | ||||| | ||| |||||||||||||| || || |||| |
Sbjct 97 CTATAGAAGATGGGATTGT-TCTCCCA-CAAGATCTCCAGAGATGATCTGAAACCAGGCG 154
Query 74 ATCACATCTATTCATGGCGTAACGCTTATATCTACTCTCATCACGGAATATATATAGGCG 133
||||||||||||| ||||||||||||||||||||||||||||||||| | || |||| |
Sbjct 155 ATCACATCTATTCTTGGCGTAACGCTTATATCTACTCTCATCACGGAGTCTACGTAGGAG 214
Query 134 ATGAGAAAGTCATTCATTTCACTTGTGGAGGTGGTCTAGAAA-CTGGAACCGGGACC-TT 191
||||||||||||||||||||||| ||||||||||||||||| | ||||| || || ||
Sbjct 215 ATGAGAAAGTCATTCATTTCACTCGTGGAGGTGGTCTAGAATTC-GGAACAGGAACAGTT 273
Query 192 CTTGGACAAGATCCTCGTTAGTGT-AATCCCGAATCATA-AAG--GAGACAATCCTTGTC 247
|||||||||||| ||| || | | ||| || |||||| ||| ||||||| |||
Sbjct 274 -TTGGACAAGATCATCGATATT-TCAATACCAAATCATGGAAGAAGAGACAAAAAGTGTA 331
Query 248 CTAATTGTGGAGAGCGATCGAATGTCGATGGTGTAATCTCTTCATGCCTTGACTGCTTTC 307
| |||||||||| | ||| ||| ||| ||||||||||||||| || ||||| || ||||
Sbjct 332 TTGATTGTGGAGATCAATCCAATCTCGGTGGTGTAATCTCTTCTTGTCTTGATTGTTTTC 391
Query 308 TCTCCGGAGGAAACATCTA--TCTCTTTGAGA-ACAGTGTCTCTCCAG-CTG-CATTTAT 362
|| |||||||||| |||| |||||| || | |||||| |||||| | || | ||| |
Sbjct 392 TCGCCGGAGGAAA--TCTACATCTCTTCGA-ATACAGTGCCTCTCC-GTCTATC-TTTCT 446
Query 363 TGCCAAACCTCGACGCGGCACATGCACAATAGCACCTTCGGATCCCTGTGATGAAGTCAT 422
||||||| || | || |||||||| |||||| |||| ||||| ||||||||||||||
Sbjct 447 AGCCAAAC---GAGGTGGTACATGCACGATAGCATCTTCAGATCCTTGTGATGAAGTCAT 503
Query 423 TTCCCGCGCCAAATACCTC-TTATTCCGGAATGGGTTTGGTGATTACCACGCTTTG-GAA 480
||| || || |||| ||| || || | ||||| |||||||| ||| | |||| ||
Sbjct 504 TTCTCGTGCTAAATTTCTCCTT-TTGCAAAATGGATTTGGTGAGTACGAT-CTTTTAGAC 561
Query 481 AATAATTGTGAAGATTTTGCAATATATTGTAAAACT 516
|| ||||||||||||||||| || ||||| ||||||
Sbjct 562 AACAATTGTGAAGATTTTGCGATTTATTGCAAAACT 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5