BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg893546 Length=729 Score E Sequences producing significant alignments: (Bits) Value AT5G16330.1 | Symbols: | NC domain-containing protein-related ... 1114 0.0 AT5G16360.1 | Symbols: | NC domain-containing protein-related ... 366 1e-100 > AT5G16330.1 | Symbols: | NC domain-containing protein-related | chr5:5346163-5346977 REVERSE LENGTH=729 Length=729 Score = 1114 bits (603), Expect = 0.0 Identities = 687/728 (94%), Gaps = 3/728 (0%) Strand=Plus/Plus Query 4 GGA-TCCCACTTTCTAGAGAAGATGGGATTTATCTCCAACCAAATCTCCAGAGATGAACT 62 ||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||| |||| Sbjct 3 GGATTCCCACTTTCTGGAGAAGATAGGATTTATCTCAAACCAAATCTCCAGAGATAAACT 62 Query 63 CAAGGCAGGAGATCACATCTATTCATGGCGTAACGCTTATATCTACTCTCATCACGGAAT 122 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 TAAACCAGGAGATCACATCTATTCATGGCGTAACGCTTATATCTACTCTCATCACGGAAT 122 Query 123 ATATATAGGCGATGAGAAAGTCATTCATTTCACTTGTGGAGGTGGTCTAGAAACTGGAAC 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 ATATATAGGCGATGAGAAAGTCATTCATTTCACTTGTGGAGGTGGTCTAGAAACTGGAAC 182 Query 183 CGGGACCTTCTTGGACAAGATCCTCGTTAGTGTAATCCCGAATCATAAAGGAGACAATCC 242 ||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| Sbjct 183 TGGGACCTTCTTGGACAAGATCGTCGTTAGTGTCATCCCTAATCATAAAGGAGACAATCC 242 Query 243 TTGTCCTAATTGTGGAGAGCGATCGAATGTCGATGGTGTAATCTCTTCATGCCTTGACTG 302 |||| ||||||||| ||||| || |||| |||| |||||||||||||| ||||||||||| Sbjct 243 TTGTTCTAATTGTGAAGAGCAATTGAATCTCGAAGGTGTAATCTCTTCTTGCCTTGACTG 302 Query 303 CTTTCTCTCCGGAGGAAACATCTATCTCTTT-GAGAACAGTGTCTCTCCAGCTGCATTTA 361 ||||||| ||||||||||||||||||| ||| ||| |||||||||||||||||||||||| Sbjct 303 CTTTCTCGCCGGAGGAAACATCTATCT-TTTCGAGTACAGTGTCTCTCCAGCTGCATTTA 361 Query 362 TTGCCAAACCTCGACGCGGCACATGCACAATAGCACCTTCGGATCCCTGTGATGAAGTCA 421 | |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 362 TCGCCAAACCTCGACGCGGCACATGCACTATAGCACCTTCGGATCCCTGCGATGAAGTCA 421 Query 422 TTTCCCGCGCCAAATACCTCTTATTCCGGAATGGGTTTGGTGATTACCACGCTTTGGAAA 481 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 422 TTTCCCGCGCCAAATACCTCTTATTGCGGAATGGGTTTGGTGATTACCATGCTTTGGAAA 481 Query 482 ATAATTGTGAAGATTTTGCAATATATTGTAAAACTAGCTTGCTGGTCGGAAAAAACTATG 541 | |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 482 ACAATTGTGAAGATTTTGCAATATATTGTAAAACAAGCTTGCTGGTCGGAAAAGACTATG 541 Query 542 TGTTGGGAAGGGGAGGTCAAGCCAGCTCGGTTAGTGCAGCTGCGTGGCTTGCGCAACTTA 601 ||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| Sbjct 542 TGTTGGGAAGGGGCGGTCAAGCCAGCTCAGTGAGTGCAGCTGCGTGGCTTGCGCAACTTA 601 Query 602 GTCCTTTCGGCAGCAAAGCTATTCAGCTCTTTGCAGATATTGGTGTGAGAAAGGATGCTA 661 |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 602 GTCCTTTCGGCAGCAAAGCTATTCAGCTATTTGCAGATATTGGTATGAGAAAGGATGCTA 661 Query 662 TTAGGGTGCCCGTGGAAAGCCTCGTTGCTCGCGCATATGCTACTGGTACCTCTAGAAATA 721 ||| ||||||||| || ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 662 TTAAGGTGCCCGTCGAGAGCCTCGTTCCTCGCGCATATGCTACTGGTACCTCTAGAAATA 721 Query 722 GAAGTTGA 729 |||| ||| Sbjct 722 GAAGGTGA 729 > AT5G16360.1 | Symbols: | NC domain-containing protein-related | chr5:5355082-5356300 REVERSE LENGTH=1111 Length=1111 Score = 366 bits (198), Expect = 1e-100 Identities = 415/516 (80%), Gaps = 30/516 (6%) Strand=Plus/Plus Query 16 CTAGAGAAGATGGGATT-TATCTCCAACCAA-ATCTCCAGAGATGAACTCAAGGCAGGAG 73 ||| ||||||||||||| | ||||| | ||| |||||||||||||| || || |||| | Sbjct 97 CTATAGAAGATGGGATTGT-TCTCCCA-CAAGATCTCCAGAGATGATCTGAAACCAGGCG 154 Query 74 ATCACATCTATTCATGGCGTAACGCTTATATCTACTCTCATCACGGAATATATATAGGCG 133 ||||||||||||| ||||||||||||||||||||||||||||||||| | || |||| | Sbjct 155 ATCACATCTATTCTTGGCGTAACGCTTATATCTACTCTCATCACGGAGTCTACGTAGGAG 214 Query 134 ATGAGAAAGTCATTCATTTCACTTGTGGAGGTGGTCTAGAAA-CTGGAACCGGGACC-TT 191 ||||||||||||||||||||||| ||||||||||||||||| | ||||| || || || Sbjct 215 ATGAGAAAGTCATTCATTTCACTCGTGGAGGTGGTCTAGAATTC-GGAACAGGAACAGTT 273 Query 192 CTTGGACAAGATCCTCGTTAGTGT-AATCCCGAATCATA-AAG--GAGACAATCCTTGTC 247 |||||||||||| ||| || | | ||| || |||||| ||| ||||||| ||| Sbjct 274 -TTGGACAAGATCATCGATATT-TCAATACCAAATCATGGAAGAAGAGACAAAAAGTGTA 331 Query 248 CTAATTGTGGAGAGCGATCGAATGTCGATGGTGTAATCTCTTCATGCCTTGACTGCTTTC 307 | |||||||||| | ||| ||| ||| ||||||||||||||| || ||||| || |||| Sbjct 332 TTGATTGTGGAGATCAATCCAATCTCGGTGGTGTAATCTCTTCTTGTCTTGATTGTTTTC 391 Query 308 TCTCCGGAGGAAACATCTA--TCTCTTTGAGA-ACAGTGTCTCTCCAG-CTG-CATTTAT 362 || |||||||||| |||| |||||| || | |||||| |||||| | || | ||| | Sbjct 392 TCGCCGGAGGAAA--TCTACATCTCTTCGA-ATACAGTGCCTCTCC-GTCTATC-TTTCT 446 Query 363 TGCCAAACCTCGACGCGGCACATGCACAATAGCACCTTCGGATCCCTGTGATGAAGTCAT 422 ||||||| || | || |||||||| |||||| |||| ||||| |||||||||||||| Sbjct 447 AGCCAAAC---GAGGTGGTACATGCACGATAGCATCTTCAGATCCTTGTGATGAAGTCAT 503 Query 423 TTCCCGCGCCAAATACCTC-TTATTCCGGAATGGGTTTGGTGATTACCACGCTTTG-GAA 480 ||| || || |||| ||| || || | ||||| |||||||| ||| | |||| || Sbjct 504 TTCTCGTGCTAAATTTCTCCTT-TTGCAAAATGGATTTGGTGAGTACGAT-CTTTTAGAC 561 Query 481 AATAATTGTGAAGATTTTGCAATATATTGTAAAACT 516 || ||||||||||||||||| || ||||| |||||| Sbjct 562 AACAATTGTGAAGATTTTGCGATTTATTGCAAAACT 597 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35364839488 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5