BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893553
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16410.1 | Symbols: | HXXXD-type acyl-transferase family pr... 791 0.0
AT1G32910.1 | Symbols: | HXXXD-type acyl-transferase family pr... 287 2e-76
> AT5G16410.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr5:5365669-5367385 REVERSE LENGTH=1461
Length=1461
Score = 791 bits (428), Expect = 0.0
Identities = 506/543 (93%), Gaps = 7/543 (1%)
Strand=Plus/Plus
Query 410 CCACGACGACCTTTTTGATCATCGACTCATCAATAGACCAATTGTACATGCCTATAACGT 469
||||||||||| |||||||||||||| ||||||||| || ||||||||||||||||||
Sbjct 657 CCACGACGACC--CTTGATCATCGACTCTTCAATAGACAAACTGTACATGCCTATAACGT 714
Query 470 CCTTGACCGTTCCACAAGAAATCACTAATCCAGATAATATCCTCACAAGCCGTATCTATT 529
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 715 CCTTGACCGTTCCACAAGAAATCACTAATCAAGATAATATCCTAACAAGCCGTATCTATT 774
Query 530 ACATCAAAGCAGATGTCTTAGAAAAGCTTCAAACTCTGGCTAGC-AATGGTAAGAGAACG 588
|||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| ||
Sbjct 775 ACATCAAAGCAGATGTCTTAGAAAAGTTTCAAACTCTGGCTA-CTAATGGTAAGAGGACC 833
Query 589 AAACTGGAGTCTTTCAGCGCGTTTCTATGGAAACTCTTAGCTAAACACGCTGCAACAGAT 648
||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 834 AAACTCGAGTCTTTCAGTGCGTTTCTATGGAAACTCTTGGCTAAACACGCTGCAACAGAG 893
Query 649 TCGGTACTCCTGACTAAAAACTCGAAACTTGGCATCGTTGTTGACGGAAGGAAGAAACTT 708
|||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 894 TCGGTACTCCCGACTAAAACCTCGAAACTTGGCATCGTTGTTGATGGAAGGAAGAAACTT 953
Query 709 ATGGAGCAAGAAGAAAACTGCAATTACTTTGGGAATATCCTCTCGGTTCCATTTGGAGAG 768
||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||
Sbjct 954 ATGGAGCAAGA-GAA--CTGCAATTACTTTGGGAACGTCCTCTCAGTTCCATTTGGAGAG 1010
Query 769 CAGAGAATCGATGACTTGATCCACAAGCCATTGTCTTGGGTGACTGACGAGGTTCACAAG 828
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1011 CGGAGAATCGATGACTTGATCCACAAGCCATTGTCTTGGGTGACAGACGAGGTTCACAAG 1070
Query 829 TTACTGGAGAGTACAATGACCAAAGATCATTTCTTGAACTTGATCGATTGGATTGAGACT 888
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1071 TTACTGGAGAGTACAATGACCAAAGACCATTTCTTGAACTTGATCGATTGGGTTGAGACT 1130
Query 889 CGCCGTCCGATACCAGTTATATCAAGGATATACGGTACTGGATTCAACGATGGGCCTGCT 948
|||||||||||||||||||||||||||| ||| |||| |||| ||||||||| || |||
Sbjct 1131 AGCCGTCCGATACCAGTTATATCAAGGATCTACAGTACAGGATCCAACGATGGACCCGCT 1190
Query 949 TTC 951
|||
Sbjct 1191 TTC 1193
Score = 172 bits (93), Expect = 4e-42
Identities = 99/102 (97%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 306 TATTGCCAAGTTTGTTCCCATGAAAAAGCATGGAGTCTTTACTATTCAGGTAACTGAACT 365
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 446 TATTGCCAAGTTTGTTCCCATGAAAAAGCATGGAGTCTTTGCTATTCAGGTAACTGAACT 505
Query 366 GAAATGTGGGAGCTTAGTTGTGGGATGCACATTTGATCACCG 407
||||||||||||| |||| |||||||||||||||||||||||
Sbjct 506 GAAATGTGGGAGCGTAGTAGTGGGATGCACATTTGATCACCG 547
> AT1G32910.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr1:11925426-11926908 FORWARD LENGTH=1395
Length=1395
Score = 287 bits (155), Expect = 2e-76
Identities = 450/583 (77%), Gaps = 57/583 (10%)
Strand=Plus/Plus
Query 408 ACCCACGACGACCTTTTTGATCATCGACTCATCAATAGACCAA-TTGTACATGCCTATAA 466
|||| |||||||| |||| ||||||||||| ||||| ||| |||| |||||| | |
Sbjct 575 ACCCGCGACGACC--ACTGATTATCGACTCATCTATAGA-CAAGATGTATATGCCTGTCA 631
Query 467 CGTCCTTGACCGTTCCACAAGAAATC-ACTAAT--CC-AGATAATATCCTCACAAGCCGT 522
|||| ||| || |||||||||||| | || ||| || ||||||||||||||||||||||
Sbjct 632 CGTCTTTGCCCCTTCCACAAGAAA-CAACAAATGACCTAGATAATATCCTCACAAGCCGT 690
Query 523 ATCTATTACATCAAAGCAGATGTC-TTAGAAAAGCTTCAAACTCT-G---GC--TAGC-- 573
|||||||||||||||| | ||| | || ||| | || |||||||| | || ||||
Sbjct 691 ATCTATTACATCAAAGAAAATG-CGTTGGAAGATCTCCAAACTCTAGCAAGCGGTAGCTC 749
Query 574 ----AA---TGGTAA-G---AGA--ACGAAACTGGAGTCTTTCAGCGCGTTTCTATGGAA 620
|| |||| | | ||| |||||||| ||||| ||||||||||||||||||||
Sbjct 750 CCCCAAGACTGGTTATGGTCAGAGGACGAAACTAGAGTCGTTCAGCGCGTTTCTATGGAA 809
Query 621 ACTCT-TAGCTAAACACGCTGCAACAGAT-TCGGTACTCCTGA-CTAAAAACTCGAAACT 677
||| | | || |||||| | | || |||| | | | || || | || ||||||||| |
Sbjct 810 ACT-TGTGGCGAAACACACAGGAAGAGATCTAGTT--TC--GAAC-AAGAACTCGAAAAT 863
Query 678 TGGCATCGTTGTTGACGGAAGGAAGAA-ACTTATGGAGCAAGAAGAAAACTGCAATTACT 736
|| || ||||| |||||||||| ||| |||||||||| ||||||| ||| | |||||
Sbjct 864 GGGTATTGTTGTCGACGGAAGGA-GAAGACTTATGGAGAAAGAAGACAACA-C--TTACT 919
Query 737 TTGGGAATATCCTCTCGGTTCCATTTGGAG-AGCAGAGAATCGATGACTTGATCCACAAG 795
|||| || | || || | |||||||| | | ||||| |||||||||||||| |||||
Sbjct 920 TTGGAAACGTTCTTTCCATCCCATTTGGTGGA-CAGAGTATCGATGACTTGATTGACAAG 978
Query 796 CCATTGTCTTGGGTGACTGACGAGGTTCACA-AGTTACT-GGAGAGTA-CAATGACCAAA 852
||||||||||||||||| |||| ||||||| | || || ||| || | || ||||||||
Sbjct 979 CCATTGTCTTGGGTGACCAACGAAGTTCACAGA-TT-CTTGGA-AGAAGCAGTGACCAAA 1035
Query 853 GATCATTTCTTGAACTTGATCGATTGGATTGAGACTCGCCGTCCGATACCAGTTA-TATC 911
|| |||||||| |||||||| |||||| |||||| || ||| |||||||| | | | ||
Sbjct 1036 GAACATTTCTTAAACTTGATTGATTGGGTTGAGATTCACCGCCCGATACCGGC-AGTGTC 1094
Query 912 AAGGATATACGGTACTGGATTCAACGATGGGCCTGCTTTCTGT 954
||||| || |||| ||| | ||||||| || ||||| |||
Sbjct 1095 GAGGATCTATAGTACGGGAACCGACGATGGACCAGCTTT-TGT 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48475951855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5