BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893562
Length=1908
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16500.1 | Symbols: | Protein kinase superfamily protein | ... 2922 0.0
> AT5G16500.1 | Symbols: | Protein kinase superfamily protein
| chr5:5386675-5389165 REVERSE LENGTH=2131
Length=2131
Score = 2922 bits (1582), Expect = 0.0
Identities = 1812/1921 (94%), Gaps = 23/1921 (1%)
Strand=Plus/Plus
Query 1 ATGATAATCATGATGAATTGTTTTCCGTGTTTCACTTCACAAAAGAGCAGAAACCCTCCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 163 ATGATAATCATGATGAATTGTTTTCCGTGTTTCACTTCACAAAAGAGCAGAAACGCTCCA 222
Query 61 TGTACGACGAACGATACTAACGA--A-AACGTTGAACACGACGAATTCAGACCACCTGTT 117
|| ||||||||||| |||||||| | |||||||||||||||||||||||||||||||||
Sbjct 223 TGCACGACGAACGAGACTAACGATGATAACGTTGAACACGACGAATTCAGACCACCTGTT 282
Query 118 GCTGCGACGACGAAACGAATTGAAGAAAGAGAA---ACAGAGC-A-AA-CGCCGTTGAAA 171
| ||||||||||||||| | ||||||||||||| |||||| | || | ||| |||||
Sbjct 283 GTTGCGACGACGAAACGGACTGAAGAAAGAGAACCTGCAGAGCAACAACCACCGGTGAAA 342
Query 172 ACATTCAATTTCCGGGAGTTAGCGACGGCGACCAAGAATTTCCGACAAGAATGTCTTTTA 231
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 343 ACATTCAATTTCCGGGAGTTAGCGACGGCGACCAAGAATTTCCGGCAAGAATGTCTTTTA 402
Query 232 GGAGAAGGTGGATTCGGTAGGGTTTACAAAGGAACTCTTCAATCTACTGGCCAGTTGGTA 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GGAGAAGGTGGATTCGGTAGGGTTTACAAAGGAACTCTTCAATCTACTGGCCAGTTGGTA 462
Query 292 GCTGTAAAGCAGCTGGACAAGCATGGACTACATGGTAACAAAGAGTTTCAAGCTGAAGTC 351
|||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 463 GCTGTAAAGCAGCTAGACAAGCATGGATTACATGGTAACAAAGAGTTTCTAGCTGAAGTC 522
Query 352 TTGTCATTGGCCAAACTCGAACACCCGAATCTTGTTAAGCTTATAGGATATTGTGCTGAT 411
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 523 TTGTCATTGGCTAAACTTGAACACCCGAATCTTGTTAAGCTTATAGGATACTGTGCTGAT 582
Query 412 GGCGATCAACGGCTTTTAGTCTTTGAGTATGTCTCTGGAGGTTCCCTTCAAGACCATCTT 471
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GGAGATCAACGGCTTTTAGTCTTTGAGTATGTCTCTGGAGGTTCCCTTCAAGACCATCTT 642
Query 472 TACGAACAAAAGCCAGGCCAGAAGCCGATGAATTGGATAACGAGGATGAAGATTGCGTTT 531
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 643 TACGAACAAAAGCCAGGCCAGAAGCCGATGGATTGGATAACGAGGATGAAGATTGCGTTT 702
Query 532 GGTGCAGCGCAAGGATTGGATTACTTGCACGATAAAGTTAATCCACCGGTGATATACCGA 591
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 703 GGTGCAGCGCAAGGATTGGATTACTTGCACGATAAAGTTACTCCAGCGGTGATATACCGA 762
Query 592 GATTTGAAAGCTTCTAACATCTTGTTAGATGCTGAGTTTTACCCTAAGCTTTGTGATTTT 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GATTTGAAAGCTTCTAACATCTTGTTAGATGCTGAGTTTTACCCTAAGCTTTGTGATTTT 822
Query 652 GGTATGCATAATCTAGAGCCAGGAACATGTGATAGCTTGTTTCTTTCTTCTCGGGTTATG 711
||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 823 GGTCTGCATAATCTAGAGCCAGGAACAGGTGATAGCTTGTTTCTTTCTTCCCGGGTTATG 882
Query 712 GATACTTATGGTTATTCCGCGCCTGAGTACACTCGAGGGGACGATCTCACTGTCAAGTCA 771
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 883 GATACTTATGGTTATTCAGCACCTGAGTACACTCGAGGGGACGATCTCACTGTCAAGTCA 942
Query 772 GATGTTTATAGCTTCGGAGTTGTGTTGCTCGAACTCATCACCGGTAGAAGAGCTATTGAC 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GATGTTTATAGCTTCGGAGTTGTGTTGCTCGAACTCATCACCGGTAGAAGAGCTATTGAC 1002
Query 832 ACCACTAAGCCTAATGATGAACAAAATCTAGTTGCTTGGGCACAACCGATATTTAGAGAA 891
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1003 ACCACTAAGCCTAATGATGAGCAAAATCTAGTTGCTTGGGCACAACCGATATTTAAAGAC 1062
Query 892 CCGAAAAGATACCCGGATATGGCAGATCCTCTTATGAGGAAAAACTTCTCAGAGAGAGGG 951
||||||||||| ||||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct 1063 CCGAAAAGATATCCGGATATGGCAGATCCTCTTTTGAGGAAGAATTTCTCAGAGAGAGGG 1122
Query 952 TTAAATCAAGCAGTGGCAATAACATCAATGTGTCTACAAGAGGAACCAACTGCTCGTCCT 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 TTAAATCAAGCAGTGGCAATAACATCAATGTGTCTACAAGAGGAACCAACTGCTCGTCCT 1182
Query 1012 TTAATAAGTGATGTAATGGTTGCTCTTAGCTTCCTTTCAATGTCTACAGAAGACGGTATT 1071
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1183 TTGATAAGTGATGTAATGGTTGCTCTTAGCTTCCTTTCAATGTCTACAGAAGATGGTATT 1242
Query 1072 CCAACCACAGTTCCAATTTTATCCTTCAGGGACAAAAGCATGTCGATTGCTTTAAGCAGA 1131
||| |||| |||||||| ||| |||||||||||||| ||||| |||||||||||||||
Sbjct 1243 CCAGCCACGGTTCCAATGGAATCGTTCAGGGACAAAAGTATGTCCATTGCTTTAAGCAGA 1302
Query 1132 CACGGTTCTTGCTCTGTAACTCCATTTTGTCTTTCTCGGAAAGATGAAGACAAAAAATCC 1191
||||||||||| |||||||||||||||||| ||||||||||||||| || ||| ||||||
Sbjct 1303 CACGGTTCTTGTTCTGTAACTCCATTTTGTATTTCTCGGAAAGATGTAGGCAACAAATCC 1362
Query 1192 AGTTCTTCATCAGACTCAGAGGATgaagaagaagaaaaagaaggaaaagaagaaaaagaa 1251
||||||||||||||||| |||||||||||||||||||| ||| ||||| ||||||||||
Sbjct 1363 AGTTCTTCATCAGACTCGGAGGATGAAGAAGAAGAAAAGGAACAAAAAGCAGAAAAAGAA 1422
Query 1252 gaagaagaatcaatgaggagtaagaaaaaacaagagcaggaagaaaCCGCTACGGATTCA 1311
|||||| |||| | |||||||||| ||||||||||||||||||||| || ||||||
Sbjct 1423 GAAGAA---TCAAC-A--AGTAAGAAAAGACAAGAGCAGGAAGAAACCGCGACAGATTCA 1476
Query 1312 GATGATGGGTCTGATTCAAACTCTGTAAAGGGTCAAGAAGAGGAACATTCTCAGTTAGAG 1371
||||||| ||||||||||||||| | ||||| ||||||||||||||| ||||||||||||
Sbjct 1477 GATGATGAGTCTGATTCAAACTCCGAAAAGGATCAAGAAGAGGAACAGTCTCAGTTAGAG 1536
Query 1372 AAAGCCAGAGAGTCTTGCAGCTCCTCCTCTGACTCTGGAAGTGGGAGAAGATCCATTGAT 1431
|||||||| |||||| | ||||| ||||||||||||||||||| ||||||||| ||||||
Sbjct 1537 AAAGCCAGGGAGTCTAGTAGCTCATCCTCTGACTCTGGAAGTGAGAGAAGATCAATTGAT 1596
Query 1432 GAAACAAACGCAACTGCACAGAGCTTGAAGATAAAGT-ACAGT--T-ATAGCTCTGAGGA 1487
||||||||||||||||| |||||||||||||||| || ||||| | |||||||||||||
Sbjct 1597 GAAACAAACGCAACTGCTCAGAGCTTGAAGATAA-GTTACAGTAATTATAGCTCTGAGGA 1655
Query 1488 AGAAGATAACGAGAAGCTAAGCAGTAAAAGCAGCTCTACATCAAACGAAGAAAGCACTTT 1547
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1656 AGAAGATAACGAGAAGCTAAGCAGTAAAAGCAGCTGTAAATCAAACGAAGAAAGCACTTT 1715
Query 1548 TTCGCGGTATGATAGCGATAGAGATCACGATGATTCGTCAAGAAACACAAGCATGCGAAT 1607
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1716 TTCGCGGTATGACAGCGGTAGAGATCACGATGATTCGTCAAGAAACACAAGCATGCGAAT 1775
Query 1608 CAATAGTCTTGCTCATGATGATAATGAGGAAGACGAGGAGGAGAATCATGAAACTCGGAG 1667
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1776 CAATAGTCTTGCTCATGATGATAAGGAGGAAGACGAGGAGGAGAATCATGAAACACGGAG 1835
Query 1668 CTATACAGATCACGATGATTCGCCAAGAAACACGAGCATGCGAATCAATAGTCTTGCTCA 1727
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||
Sbjct 1836 CTATAGTGATCACGATGATTCGCCAAGGAACACTAGCATGCGAATCAATAGTCTTTCTCA 1895
Query 1728 TGATGATGATGAGGAAGACGAGGAGGAGAATCATGAAACTCGGCTTGAACACATTCATAG 1787
|||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1896 TGATGATGATGAGGAAGAGGAGGAGGAGAATCATCAAACTCGGCTTGAGCACATTCATAG 1955
Query 1788 CTCGAAATCTGAAGACCAAAGTGTTTATTCAGATGATGATGCCGGCGAGGCAAGTGGTGA 1847
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1956 CTCGAAATCTGAAGACCAAAGTGTTTATTCAGATGATGATGCCGGCGA---AAGTGGTGA 2012
Query 1848 GTCGTCTTTGCATAGGATCGAAGCAGAGGAAGAAGAACACATTTCTTCTGATCATGATTA 1907
||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 2013 GTCGTCTTTGCATAGGATCGAAGCAAAGGAAGAAGAACATATTTCTTCTGACCATGATTA 2072
Query 1908 A 1908
|
Sbjct 2073 A 2073
Score = 152 bits (82), Expect = 1e-35
Identities = 92/97 (95%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 1674 AGATCACGATGATTCGCCAAGAAACACGAGCATGCGAATCAATAGTCTTGCTCATGATGA 1733
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1737 AGATCACGATGATTCGTCAAGAAACACAAGCATGCGAATCAATAGTCTTGCTCATGATGA 1796
Query 1734 TGATGAGGAAGACGAGGAGGAGAATCATGAAACTCGG 1770
| | ||||||||||||||||||||||||||||| |||
Sbjct 1797 TAAGGAGGAAGACGAGGAGGAGAATCATGAAACACGG 1833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94477425690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5