BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg893569 Length=1260 Score E Sequences producing significant alignments: (Bits) Value AT5G16560.1 | Symbols: KAN, KAN1 | Homeodomain-like superfamily... 1066 0.0 > AT5G16560.1 | Symbols: KAN, KAN1 | Homeodomain-like superfamily protein | chr5:5406863-5411424 REVERSE LENGTH=2046 Length=2046 Score = 1066 bits (577), Expect = 0.0 Identities = 703/759 (93%), Gaps = 27/759 (4%) Strand=Plus/Plus Query 1 ATGTCCATGGAAGGAGTTTTTCTAGAGAAAACCAAAACAAACACAACTACTACTCTCCCT 60 ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 333 ATGTCTATGGAAGGTGTTTTTCTAGAGAAAACCAAAACAAACACAACAACTACTCTCCCT 392 Query 61 GATCTATCTCTCCACATCAGTCTCCCAGATATTCATCAATATCATCACAACGAATCTTCC 120 ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 393 GATCTATCTCTCCACATCAGTCTCCCAGATATTCATCAATACCATCACAATGAATCTTCT 452 Query 121 AAAGAATCTTCAAGAAGATCGTCCCAACCCGAACACAACAACCGATCATCGAGCTTTGAA 180 |||||||||||||||||||| ||||||| |||| ||||||||||||| || | ||||||| Sbjct 453 AAAGAATCTTCAAGAAGATCCTCCCAACTCGAAAACAACAACCGATCGTCCAACTTTGAA 512 Query 181 CTCTCTCTATCTCATCATAACCACCCAACCGCAAGAATCTTCCATTGTCCTGATCGAAGA 240 |||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 513 CTCTCTTTATCTCATCATAACCATCCAACAGCAAGAATCTTCCATTGTCCTGATCGAAGA 572 Query 241 ACCCTTAATCTTCCTCATCAGCAGCATTACAACAACCCTATCATTAATGGTGGAAGTCTT 300 |||||||||||||||||||||||||||||||||||||||||||| |||||| | | Sbjct 573 ACCCTTAATCTTCCTCATCAGCAGCATTACAACAACCCTATCATCAATGGT----G---T 625 Query 301 CATCATCAAAGGGTCGATGAATCCGAGATTAGTAATCTCCACCGTCCAATTAGAGGCATC 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 626 --TCATCAAAGGGTCGATGAATCCGAGATTAGTAATCTCCACCGTCCAATTAGAGGCATC 683 Query 361 CCGGTCTATCACAACCGTTCATTCCCTTTCCACCAACAAAACTCTCCTTCTTCTTCTTTG 420 ||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 684 CCGGTCTATCACAACCGTTCATTCCCTTTCCACCAACAAAA--------C-TCTTCATTA 734 Query 421 CCTTCTCTTGGAGGAGGAGACTTGGATCAAATCTCAATCTTAAACTCATCTTCCGGCTAT 480 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 735 CCTTCTCTTGGAGGAGGAGACATGGATCAAATCTCAATCTTAAACTCATCTTCCGGCTAC 794 Query 481 AACAACGCTTACCGATCATTACAATCTTCCCCGAGGCTCAAAGGTGTTCCTTTGcatcat 540 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 795 AACAACGCTTACCGATCATTACAATCTTCCCCGAGGCTTAAAGGTGTTCCTTTGCATCAT 854 Query 541 catcatcatcatAATCACTATGGATCAGTAGTTGGATCTTCAGATTCGTCTTCTCCtcat 600 ||||||||||||||||| ||||| ||| |||||||||||||||||||||||| | | | Sbjct 855 CATCATCATCATAATCAGTATGG---AGTCGTTGGATCTTCAGATTCGTCTTCT-C-C-T 908 Query 601 catcacaaccatcatcatcatcatcatGGGATGATCAGATCAAGATTCTTGCCTAAGATG 660 ||| | ||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 909 CAT--C-ACCATAACCATCATCATCATGGGATGATCAGATCAAGATTCTTGCCTAAGATG 965 Query 661 CCGACAAAACGGAGCATGAGAGCTCCAAGGATGCGTTGGACAAGTAGCCTCCACGCGCGG 720 |||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 966 CCGACAAAGCGAAGCATGAGAGCTCCAAGGATGCGTTGGACTAGTAGCCTCCACGCGCGG 1025 Query 721 TTTGTTCACGCTGTTGAGCTTCTAGGCGGTCATGAAAGA 759 ||||||||||||||||||||||||||||| ||||||||| Sbjct 1026 TTTGTTCACGCTGTTGAGCTTCTAGGCGGCCATGAAAGA 1064 Score = 686 bits (371), Expect = 0.0 Identities = 398/410 (97%), Gaps = 5/410 (1%) Strand=Plus/Plus Query 852 GATGTATCGAACTGTTAAGACCACTAACAAGCCTGCTGCTTCATCTGATGGGTCAGGCGA 911 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 1139 GATGTATCGAACTGTTAAGACCACTAACAAGCCTGCTGCTTCATCAGATGGGTCAGGAGA 1198 Query 912 AGAAGAAATGGGCATAAATGGAAACGAAGTTCATCATCATCAATCATCGACGGATCAAAG 971 ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 1199 AGAAGAAATGGGCATAAATGGAAACGAAG-T--TCATCATCAATCATCGACGGATCAAAG 1255 Query 972 GGCACAATCTGATGATACTTCTCTTCATCAAGAAATTGACATTTCTTCCACACAACCTCG 1031 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1256 GGCACAATCTGATGATACTTCTCTTCATCAAGAAACTGACATTTCTTCCACACAACCTCG 1315 Query 1032 TTGGAGTAACTCTTCACGAGAGACATGGCCATCAAGTAATAACTGCTCAAGCGACATAGA 1091 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1316 TTGGAGTAACTCTTCACGAGAGACATGGCCATTAAGTAATAACTGCTCAAGCGACATAGA 1375 Query 1092 TACAATGATCAGAACTTCATCAACATCAATGATCTCTCACTATCAAAGATCCAGCCTTCA 1151 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 1376 TACAATGATCAGAACTTCATCAACATCAATGATCTCTCATTATCAAAGATCCAGCATTCA 1435 Query 1152 AAATCAGGAGCAAAGGTCGAATGATCAAGCAAAGAGGTGTGGAGATCTTAGTTGT-AACA 1210 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | Sbjct 1436 AAATCAGGAGCAAAGGTCGAATGATCAAGCAAAGAGGTGTGGAAATCTTAGTTGTGAA-A 1494 Query 1211 ATCCAAGTTTGGAGTTTACATTAGGCAGACCAGATTGGCACGAGAAATGA 1260 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1495 ATCCAAGTTTGGAGTTTACATTAGGCAGACCAGATTGGCACGAGAAATGA 1544 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61947472530 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5