BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893569
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16560.1 | Symbols: KAN, KAN1 | Homeodomain-like superfamily... 1066 0.0
> AT5G16560.1 | Symbols: KAN, KAN1 | Homeodomain-like superfamily
protein | chr5:5406863-5411424 REVERSE LENGTH=2046
Length=2046
Score = 1066 bits (577), Expect = 0.0
Identities = 703/759 (93%), Gaps = 27/759 (4%)
Strand=Plus/Plus
Query 1 ATGTCCATGGAAGGAGTTTTTCTAGAGAAAACCAAAACAAACACAACTACTACTCTCCCT 60
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 333 ATGTCTATGGAAGGTGTTTTTCTAGAGAAAACCAAAACAAACACAACAACTACTCTCCCT 392
Query 61 GATCTATCTCTCCACATCAGTCTCCCAGATATTCATCAATATCATCACAACGAATCTTCC 120
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 393 GATCTATCTCTCCACATCAGTCTCCCAGATATTCATCAATACCATCACAATGAATCTTCT 452
Query 121 AAAGAATCTTCAAGAAGATCGTCCCAACCCGAACACAACAACCGATCATCGAGCTTTGAA 180
|||||||||||||||||||| ||||||| |||| ||||||||||||| || | |||||||
Sbjct 453 AAAGAATCTTCAAGAAGATCCTCCCAACTCGAAAACAACAACCGATCGTCCAACTTTGAA 512
Query 181 CTCTCTCTATCTCATCATAACCACCCAACCGCAAGAATCTTCCATTGTCCTGATCGAAGA 240
|||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 513 CTCTCTTTATCTCATCATAACCATCCAACAGCAAGAATCTTCCATTGTCCTGATCGAAGA 572
Query 241 ACCCTTAATCTTCCTCATCAGCAGCATTACAACAACCCTATCATTAATGGTGGAAGTCTT 300
|||||||||||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct 573 ACCCTTAATCTTCCTCATCAGCAGCATTACAACAACCCTATCATCAATGGT----G---T 625
Query 301 CATCATCAAAGGGTCGATGAATCCGAGATTAGTAATCTCCACCGTCCAATTAGAGGCATC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 --TCATCAAAGGGTCGATGAATCCGAGATTAGTAATCTCCACCGTCCAATTAGAGGCATC 683
Query 361 CCGGTCTATCACAACCGTTCATTCCCTTTCCACCAACAAAACTCTCCTTCTTCTTCTTTG 420
||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 684 CCGGTCTATCACAACCGTTCATTCCCTTTCCACCAACAAAA--------C-TCTTCATTA 734
Query 421 CCTTCTCTTGGAGGAGGAGACTTGGATCAAATCTCAATCTTAAACTCATCTTCCGGCTAT 480
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 735 CCTTCTCTTGGAGGAGGAGACATGGATCAAATCTCAATCTTAAACTCATCTTCCGGCTAC 794
Query 481 AACAACGCTTACCGATCATTACAATCTTCCCCGAGGCTCAAAGGTGTTCCTTTGcatcat 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 795 AACAACGCTTACCGATCATTACAATCTTCCCCGAGGCTTAAAGGTGTTCCTTTGCATCAT 854
Query 541 catcatcatcatAATCACTATGGATCAGTAGTTGGATCTTCAGATTCGTCTTCTCCtcat 600
||||||||||||||||| ||||| ||| |||||||||||||||||||||||| | | |
Sbjct 855 CATCATCATCATAATCAGTATGG---AGTCGTTGGATCTTCAGATTCGTCTTCT-C-C-T 908
Query 601 catcacaaccatcatcatcatcatcatGGGATGATCAGATCAAGATTCTTGCCTAAGATG 660
||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 CAT--C-ACCATAACCATCATCATCATGGGATGATCAGATCAAGATTCTTGCCTAAGATG 965
Query 661 CCGACAAAACGGAGCATGAGAGCTCCAAGGATGCGTTGGACAAGTAGCCTCCACGCGCGG 720
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 966 CCGACAAAGCGAAGCATGAGAGCTCCAAGGATGCGTTGGACTAGTAGCCTCCACGCGCGG 1025
Query 721 TTTGTTCACGCTGTTGAGCTTCTAGGCGGTCATGAAAGA 759
||||||||||||||||||||||||||||| |||||||||
Sbjct 1026 TTTGTTCACGCTGTTGAGCTTCTAGGCGGCCATGAAAGA 1064
Score = 686 bits (371), Expect = 0.0
Identities = 398/410 (97%), Gaps = 5/410 (1%)
Strand=Plus/Plus
Query 852 GATGTATCGAACTGTTAAGACCACTAACAAGCCTGCTGCTTCATCTGATGGGTCAGGCGA 911
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1139 GATGTATCGAACTGTTAAGACCACTAACAAGCCTGCTGCTTCATCAGATGGGTCAGGAGA 1198
Query 912 AGAAGAAATGGGCATAAATGGAAACGAAGTTCATCATCATCAATCATCGACGGATCAAAG 971
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1199 AGAAGAAATGGGCATAAATGGAAACGAAG-T--TCATCATCAATCATCGACGGATCAAAG 1255
Query 972 GGCACAATCTGATGATACTTCTCTTCATCAAGAAATTGACATTTCTTCCACACAACCTCG 1031
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1256 GGCACAATCTGATGATACTTCTCTTCATCAAGAAACTGACATTTCTTCCACACAACCTCG 1315
Query 1032 TTGGAGTAACTCTTCACGAGAGACATGGCCATCAAGTAATAACTGCTCAAGCGACATAGA 1091
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1316 TTGGAGTAACTCTTCACGAGAGACATGGCCATTAAGTAATAACTGCTCAAGCGACATAGA 1375
Query 1092 TACAATGATCAGAACTTCATCAACATCAATGATCTCTCACTATCAAAGATCCAGCCTTCA 1151
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1376 TACAATGATCAGAACTTCATCAACATCAATGATCTCTCATTATCAAAGATCCAGCATTCA 1435
Query 1152 AAATCAGGAGCAAAGGTCGAATGATCAAGCAAAGAGGTGTGGAGATCTTAGTTGT-AACA 1210
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 1436 AAATCAGGAGCAAAGGTCGAATGATCAAGCAAAGAGGTGTGGAAATCTTAGTTGTGAA-A 1494
Query 1211 ATCCAAGTTTGGAGTTTACATTAGGCAGACCAGATTGGCACGAGAAATGA 1260
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 ATCCAAGTTTGGAGTTTACATTAGGCAGACCAGATTGGCACGAGAAATGA 1544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61947472530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5