BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg893579

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G16660.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   756    0.0  


> AT5G16660.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast thylakoid membrane, chloroplast, 
membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; 
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT3G02900.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr5:5465484-5467063 REVERSE LENGTH=779
Length=779

 Score =  756 bits (409),  Expect = 0.0
 Identities = 477/509 (94%), Gaps = 7/509 (1%)
 Strand=Plus/Plus

Query  1    ATGGCGTCCTGTATTGC-AGCTGCTCCTCTTTCTCTCTCTGGTGGGTCTCAATCTCATTA  59
            |||||||| |||||||| | |||||||||||||||| ||||| | |||||||||||||||
Sbjct  58   ATGGCGTCGTGTATTGCTA-CTGCTCCTCTTTCTCTATCTGGCGTGTCTCAATCTCATTA  116

Query  60   TGTGAAAGCTAATGGATTGTCT---GCAACAAAGCTCAATTCTATTTGTAAAACCTCTGC  116
            ||||||||||||||||||||||    ||||||| |||| |||||||||||||||||||| 
Sbjct  117  TGTGAAAGCTAATGGATTGTCTACAACAACAAAACTCAGTTCTATTTGTAAAACCTCTG-  175

Query  117  A-TTGACTATTCACAAGAAATCAAACCGGACTCGCAAGTTTTCTGTTTCTGCAGGGTATC  175
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  176  ATTTGACTATTCACAAGAAATCAAACCGGACTCGCAAGTTTTCTGTTTCTGCAGGGTATC  235

Query  176  GAGATGGGAGTAGGAGTGGAAGCAGTGGTGATTTCATAGCTGGTTTTCTTCTAGGAGGTG  235
            ||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct  236  GAGATGGAAGTAGAAGCGGAAGCAGTGGTGATTTCATTGCTGGTTTTCTTCTAGGAGGTG  295

Query  236  CTGTCTTTGGCGCTGTTGCTTATATCTTTGCTCCACAGATCCGGAGATCGGTTCTGAATG  295
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct  296  CTGTCTTTGGCGCTGTTGCTTATATCTTTGCTCCACAGATCCGAAGATCGGTTCTAAATG  355

Query  296  AAGAAGATGAGTATGGTTTCAAGAAGCCGCAACAGCCAACTTACTACGACGAAGGTTTAG  355
            ||||||| ||||| |||||  |||||||| |||||||||| |||||||| ||||||||||
Sbjct  356  AAGAAGACGAGTACGGTTTTGAGAAGCCGAAACAGCCAACGTACTACGATGAAGGTTTAG  415

Query  356  AGAAAACAAGAGAGACACTGAATGAGAAAATAGGACAACTTAATTCAGCCATTGACAATG  415
            ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct  416  AGAAAACAAGAGAGACACTGAATGAGAAAATAGGACAACTTAATTCAGCGATAGACAATG  475

Query  416  TTTCTTCGCGTTTAAGAGGTCGAGAAAAGAACACTTCTTCCCCAAATGTACCGGTCGAAA  475
            | |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  476  TCTCTTCGCGTTTACGAGGTCGAGAAAAGAACACTTCTTCCCTAAATGTACCGGTCGAAA  535

Query  476  CTGACCCAGAGGTTGAAGCTACGACTTGA  504
            |||||||||||||||||||||||||||||
Sbjct  536  CTGACCCAGAGGTTGAAGCTACGACTTGA  564



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5