BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893619
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17070.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein p... 1134 0.0
> AT5G17070.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein
phosphatase 4 core regulatory subunit R2 (InterPro:IPR015267);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr5:5613368-5616138 REVERSE LENGTH=1030
Length=1030
Score = 1134 bits (614), Expect = 0.0
Identities = 709/755 (94%), Gaps = 6/755 (1%)
Strand=Plus/Plus
Query 47 TTCATCCCAATGACGGCGTTCAACGCCAGGATCACGCCGTGCTTCCCGAAGTTCTCGAGC 106
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 133 TTCATCCCAATGACGGCGTTCAACGCCAGGATCACGCCGTCCTTCCCGAAGTTCTTGAGC 192
Query 107 ATCGTGGAGCTGAGCAGATAGCAGATATGTCTGCGGAAGAAGTAAAGAGGACATTAGAAG 166
||| ||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||
Sbjct 193 ATCCTGGAGCTGAGCAGATAGCAGATATGTCTGAGGAAGAAGTAAAGCGCACATTAGAAG 252
Query 167 CAGTAGCATCTACCGGAAAGTTCTGGCAAGACTGGGAGAAACTAAAGGGAACGCTATCGT 226
| ||||||||||| || ||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 253 CTGTAGCATCTACTGGGAAGTTCTGGCAGGACTGGGAGATACTAAAGGGAACGCTATCGT 312
Query 227 ACTGGTTGAAGAAGGTTCTATCGGAATATTCTGAGGCAAAAATGACGGACGAACAACAAA 286
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 313 ACTGGTTGAAGAAGGTTCTATCGGAATATTCTGAGGCAAAAATGACGGATGAGCAACAAA 372
Query 287 AGGAAGCTCTTGGAGAAACATACTCAGAGCTGGTTAGTCGACTGGATGAAGCCCTTCTTA 346
||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||
Sbjct 373 AGGAAGCTCTTGGAGAACCATATTCAGAGCTGGTTAGTCGATTGGATGAAGCCCTTCTTA 432
Query 347 GTTTCGATGAAGGACCTCCATTTACATTGCAGAGACTCTGTGAGATCCTTTTGGCTGCAA 406
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 GATTCGATGATGGACCTCCATTTACATTGCAGAGACTCTGTGAGATCCTTTTGGCTGCAA 492
Query 407 GGAGCATCTACCCAAAGCTCTCAAAACTCGCTCTTGCATTAGAAAAGAATCTGTTGGTTA 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 GGAGCATCTACCCAAAGCTCTCAAAACTCGCTCTTGCATTAGAAAAGAATCTGTTGGTTA 552
Query 467 CTTCTATGTTAGCCATCAGTACAGACCCACAATCACAAACCGTTGATGATCCAAACTCAG 526
||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| |||
Sbjct 553 CTTCTATGTTAGCCATCAGTACAGAGCCACAATCACAAACCACTGAGGATCCAAACACAG 612
Query 527 CAACCACAGACACAATAACAACTGCTGAAAGTTGCGCA-CCAAATGGAATTGACG-CAAT 584
||||| |||| ||||||||| |||||| |||||||| | ||||||| |||||| | ||||
Sbjct 613 CAACCTCAGAGACAATAACATCTGCTGCAAGTTGCG-ATCCAAATGTAATTGA-GTCAAT 670
Query 585 GGGGGGCGATAAGGATGAGATAATGACTGAGGTAGAAGAAGCAGATGTTGATGACGCAAT 644
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 671 GGGAGGCGATAAGGATGAGATAATGACAGAGGTAGAAGAAGCAGATGTTGATGACGCAAT 730
Query 645 GACTATTGACATGGAAACAATCGATGAACCATCAGAGACAATGACAACCACAAGTGAAAG 704
|||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 731 GACTGTTGACATGGAAACAATCGATGAACCATCAGAGACAATGACGACCACGAGTGAGAG 790
Query 705 TGAGACGCTAAGCGTAAACACTGCTGCACAACCATCATCGGATTCAATGGCTG-CAGAGG 763
|||||| ||||||| |||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 791 TGAGACTCTAAGCGAAAACACTGCTGCACAACCATTATCGGATTCAATGG-TGGCAGAGG 849
Query 764 AGGGAGATTCGCGGTTGCCTTCAACGTGTGCCTAG 798
| |||||||| ||||||||| ||||||||||||||
Sbjct 850 AAGGAGATTCACGGTTGCCTACAACGTGTGCCTAG 884
Score = 115 bits (62), Expect = 6e-25
Identities = 66/68 (97%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAATCCATCATCATCGGAAACTTCCGAGATTTCCTCCGTCATTCATCCCAATGAC 60
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 51 ATGGAGAATCCGTCATCATCGGAAACTTCCGAGATTTCCTCCGTCGTTCATCCCAATGAC 110
Query 61 GGCGTTCA 68
||||||||
Sbjct 111 GGCGTTCA 118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5