BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893621
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17110.1 | Symbols: | Cystatin/monellin superfamily protein... 760 0.0
AT5G17100.1 | Symbols: | Cystatin/monellin superfamily protein... 597 4e-170
> AT5G17110.1 | Symbols: | Cystatin/monellin superfamily protein
| chr5:5626563-5627474 REVERSE LENGTH=627
Length=627
Score = 760 bits (411), Expect = 0.0
Identities = 565/636 (89%), Gaps = 24/636 (4%)
Strand=Plus/Plus
Query 1 ATGACATCGGCCAACAACGAATTAACTTG-TTCCACGACGGGTACATCGGCCAAGGAGGA 59
||||||||| ||||||| |||||||| || ||||| || |||||||||| || | ||||
Sbjct 1 ATGACATCGACCAACAATGAATTAAC-TGTTTCCATGATGGGTACATCGACC-A--AGGA 56
Query 60 GGAGGTTGTCTCTAAAGTCGACAAGGAAGACGACGA-A--AGCA--G-CAGCGATA--G- 110
|||||||||||||||||||||| ||||||||||||| | |||| | |||||||| |
Sbjct 57 GGAGGTTGTCTCTAAAGTCGACGAGGAAGACGACGATAGTAGCAGCGACAGCGATATGGA 116
Query 111 CGACGGCAGCGACAGCGAGTGGGCTGGGTATAACTG-GTTACCGGAAACTGAACCAGAGT 169
|||| ||||||||||||||||||||||||||| | |||| ||||||||||||||||||
Sbjct 117 TTACGGTAGCGACAGCGAGTGGGCTGGGTATAAC-GTGTTAGCGGAAACTGAACCAGAGT 175
Query 170 GGGACGTCGATAGCTTTGATGGTCACGAGTTTAAAATCAACCCCAGGGTTCGT-AAGATG 228
|||||||||| |||||||| |||||||||||||||||||| |||||||||||| || |||
Sbjct 176 GGGACGTCGACAGCTTTGACGGTCACGAGTTTAAAATCAATCCCAGGGTTCGTCAA-ATG 234
Query 229 TATTC-AAGCCAGGAACTTTATGACAAATACTACAACAACAGGCTTAAGGCTTTCGAGAG 287
|| | |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 235 TA-CCGCAGCCAGGAACTTTATGACAAATACTACAACAACAGGCTCAAGGCTTTCGAGAA 293
Query 288 TAAGGGTTTCCTTCCCGATCATCTGAACGGAATCTACAATGTTTATCTAGACGAAAAAAT 347
||||||||| ||| | ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 294 TAAGGGTTTTCTTTCTGATCATCTGAATGGAATCTATGATGTTTATCTAGACGAAAAAAT 353
Query 348 GGATGGCTACAACACTACTCGGGATTTCATGGTAAAGCTTGCTAATGTGTGTGTTCAGAA 407
|||||||||||||| |||| |||||||||||| | |||||||||||||||||||| ||||
Sbjct 354 GGATGGCTACAACAGTACTAGGGATTTCATGGCAGAGCTTGCTAATGTGTGTGTTAAGAA 413
Query 408 ATACAACGAGACCAAGAAAAAGACTTTGGAATTTGTAAGTGTTGTGAGAGTTACTGTAAG 467
| |||||||||||||| ||| ||||||||||| |||| ||||||||||| ||||| |||
Sbjct 414 ACACAACGAGACCAAGGGAAATACTTTGGAATTGGTAAATGTTGTGAGAGCTACTGAAAG 473
Query 468 GGGAGCAGCTGCGTGGAGGTTTTACATCACTTTTATGGCTCGGGAGTATCGTGATGGGCC 527
|||||||||| | |||||||| |||||||||||||||||||| |||| || |||||||||
Sbjct 474 GGGAGCAGCTACATGGAGGTTGTACATCACTTTTATGGCTCGAGAGTTTCCTGATGGGCC 533
Query 528 TCTTGTTGAGTACCAAGCCAAGGTTATCAAA-TTCTTAGGGCAGAAGGATCCTTTCCCAG 586
|||||||||||||||||||||||| || ||| ||||||||| ||||||||||||||||
Sbjct 534 TCTTGTTGAGTACCAAGCCAAGGTAAT-AAAGTTCTTAGGGGTCAAGGATCCTTTCCCAG 592
Query 587 TTCTCTGCAGACCAAG-TCCTAAACCAGGAATCTAA 621
||||||||||| || | |||||||||||||||||||
Sbjct 593 TTCTCTGCAGAGCA-GCTCCTAAACCAGGAATCTAA 627
> AT5G17100.1 | Symbols: | Cystatin/monellin superfamily protein
| chr5:5623021-5624800 REVERSE LENGTH=1108
Length=1108
Score = 597 bits (323), Expect = 4e-170
Identities = 496/576 (86%), Gaps = 26/576 (5%)
Strand=Plus/Plus
Query 57 GGAGGAGGTTGTCTCTAAAGTCGACAAGGA-AGACGACGAAAGCAG-CAGCGATA--G-C 111
|||||||||| |||||||||||||| |||| || | | | ||| | |||||||| |
Sbjct 166 GGAGGAGGTTATCTCTAAAGTCGACGAGGATAG-C-A-G-CAGC-GACAGCGATATGGAT 220
Query 112 GACGGCAGCGACAGCGAGTGGGCTGGGTATAAC-TGGTTACCGGAAACTGAACCAGAGTG 170
||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||
Sbjct 221 GACGGCAGCGACAGCGAGTGGGCTGGGTATAACGTG-TTAGCGGAAACTGAACCAGAGTG 279
Query 171 GGACGTCGATAGCTTTGATGGTCACGAGTTTAAAATCAACCCCAGGGTTCGTAAGATGTA 230
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 280 GGACGTCGACAGCTTTGATGGTCACGAATTTAAAATCAATCCCAGGGTTCGTAAGATGTA 339
Query 231 TTCAAG-C-C-AGGAACTTTATGACAAATACTACAACAACAGGCTTAAGGCTTTCGAGAG 287
| | | | || ||| ||||||| |||||||||| ||||||| |||||||| ||||
Sbjct 340 CGGACGTCACCAGCAACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAG 399
Query 288 TAAGGGTTTCCTTCCCGATCATCT-GAACGGAATCTACAATGTTTATCTAGACGAAAAAA 346
||||||||| ||||| ||| | || |||||||||| || ||||| ||||||||| ||||
Sbjct 400 TAAGGGTTTTCTTCCTGAT-ACCTTGAACGGAATCGACGATGTTGATCTAGACGGTAAAA 458
Query 347 TGGATGGCTACAACACTACTCGGGATTTCATGGTAAAGCTTGCTAATGTGTGTGTTCAGA 406
||||||||||||||| |||| |||||||||||| | |||||||||||||||||||| |||
Sbjct 459 TGGATGGCTACAACAGTACTAGGGATTTCATGGCAGAGCTTGCTAATGTGTGTGTTAAGA 518
Query 407 AATACAACGAGACCAAGAAAAAGACTTTGGAATTTGTAAGTGTTGTGAGAGTTACTGTAA 466
|| |||||||||||||| || |||||| || || |||| ||||| ||||||||||| ||
Sbjct 519 AACACAACGAGACCAAGGGAACGACTTTAGAGTTGGTAAATGTTGCGAGAGTTACTGCAA 578
Query 467 GGGGAGCAGCTGCGTGGAGGTTTTACATCACTTTTATGGCTCGGGAGTAT-CGTGATGGG 525
||||||||||| | |||||||| |||||||||||||||||||| |||| | | |||||||
Sbjct 579 GGGGAGCAGCTACATGGAGGTTGTACATCACTTTTATGGCTCGAGAGTTTTC-TGATGGG 637
Query 526 CCTCTTGTTGAGTACCAAGCCAAGGTTATCAAA-TTCTTAGGGCA-GAAGGA---TCCTT 580
|||||||||||||||||||||||||| || | ||||||||| | || ||| ||||
Sbjct 638 CCTCTTGTTGAGTACCAAGCCAAGGTAAT-AGTCTTCTTAGGGGATGA-GGAACGTCCTG 695
Query 581 TCCCAGTTCTCTGCAGACCAAGTCCTAAACCAGGAA 616
|||||||||||||||| |||||||||||||||||||
Sbjct 696 TCCCAGTTCTCTGCAGGCCAAGTCCTAAACCAGGAA 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5