BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893650
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17390.1 | Symbols: | Adenine nucleotide alpha hydrolases-l... 1382 0.0
> AT5G17390.1 | Symbols: | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr5:5727640-5728688 FORWARD LENGTH=858
Length=858
Score = 1382 bits (748), Expect = 0.0
Identities = 824/861 (96%), Gaps = 3/861 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAGATCGCTCAAGAAATCAGCCAAGTTGAGTCTAAGAAGAGTCCGGATCAATTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAGATCGCTCAAGAAATCAGCCAAGTTGAGTCTAAGAAGAGTCCGGATCAATTCA 60
Query 61 CCTTCGATTAGGTTCAAACCGGACTCGAGTTCCATAGAGAGAGACCAAAGAATCGAGTTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTTCGATTAGGTTCAAACCGGACTCGAGTTCCATAGAGAGAGACCAAAGAATCGAGTTT 120
Query 121 CTAGGCGAAAATGGTGATGATGCCGGATCCGGagaagaagaaaccaaagaagaaaacaat 180
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 121 CTAGGCGAAAATGGTGATGATGCCGGATCCGGAGAAGAAGACACCAAAGAAGCAAACAAT 180
Query 181 gaaagtgaagaggttgaagacaaggaagaagaaataagagtcaaagtaattgtagaggag 240
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 181 GAAAGTGAAGAGGTTGAAGATAAGGAAGAAGAAA---GAGTCAAAGTAATTGTAGAGGAG 237
Query 241 gaagaagagaaagaacaagaTGATGGCAAGAGCTTTAACAATGGATGCGGAGAAGGaaaa 300
|||||||| |||||||||||||||| |||||||||||||| |||| ||||||||||||||
Sbjct 238 GAAGAAGAAAAAGAACAAGATGATGCCAAGAGCTTTAACATTGGAGGCGGAGAAGGAAAA 297
Query 301 aaaGAGGCCGTGGCAGCAGTTGAGGCGGTTGAGGAGGAGGCGGAAGGCGGGAACAGAGTA 360
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 298 AAAGAGGCGGTGGCAGCGGTTGAGGCGGTTGAGGAGGAGGCGGAAGGCGGGAATAGAGTA 357
Query 361 ATGGTGGTGGTAGATAAAGCGCTTGCTTCTACCGGAGCTTTAGAATGGGCTATTACGCAT 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATGGTGGTGGTTGATAAAGCGCTTGCTTCTACCGGAGCTTTAGAATGGGCTATTACGCAT 417
Query 421 ACTTTACAACCACAAGACACTCTTTTTCTGTTATACTTTGCAAAACCGTTTAGAAAAAGC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACTTTACAACCACAAGACACTCTTTTTCTGTTATACTTTGCAAAACCGTTTAGAAAAAGT 477
Query 481 AAAAGGAAGAACCGAAAACGCGAGGTGAAAACCGATGAATTGGTCCATACTTTGAAGAAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 478 AAAAGGAAGAACCGAAAACGCGAGGTGAAAACCGATGAATTGGTCCATACTTTAAAGAAA 537
Query 541 CTGTGCCAAACAAAACGTCCCGGGATAGAAGTGGAGATAAGGAGGTTagaagggaaagac 600
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 538 CTGTGCCAAACGAAACGACCCGGGATAGAAGTGGAGATAAGGAGGTTAGAGGGGAAAGAC 597
Query 601 aaagacaaaggacaaaagatagttgaagaagcaaagaaacaagaagTGAGCCTTTTAGTG 660
||||||||||| || ||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 598 AAAGACAAAGGGCAGAAGATAGTTGAAGAATCAAAGAAACAACAAGTGAGCCTTTTAGTG 657
Query 661 GTTGGACAAGAGAAGAAACCTCCGGTGTGGAGGCTTTTGAAGAGATGGGCATGGAAGAGA 720
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 658 GTTGGACAAGAGAAGAAACCTCCGGTCTGGAGGCTATTGAAGAGATGGGCGTGGAAGAGA 717
Query 721 CGCCGTGGACACGGAGGTGTTCTCAAATACTGTCTCGAAAATGCCTCCTGCATGACAATT 780
||||||||||||| |||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 718 CGCCGTGGACACGAAGGTGTTCTCAAATACTGCCTCGAAAACGCCTCTTGCATGACAATC 777
Query 781 GCAGTTAAACCCAAGAACCGCAGGCTCGGTGGTTACTTAATCACCACCAAACGACACAAA 840
|| ||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||
Sbjct 778 GCGGTTAAACCCAAGAACCGCAAGCTCGGCGGTTACTTAATCACCACCAAACGCCACAAA 837
Query 841 AACTTCTGGCTCCTAGCTTGA 861
||||||||||| || ||||||
Sbjct 838 AACTTCTGGCTTCTCGCTTGA 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5