BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893654
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17430.1 | Symbols: BBM | Integrase-type DNA-binding superfa... 2617 0.0
> AT5G17430.1 | Symbols: BBM | Integrase-type DNA-binding superfamily
protein | chr5:5742542-5745568 REVERSE LENGTH=1755
Length=1755
Score = 2617 bits (1417), Expect = 0.0
Identities = 1653/1767 (94%), Gaps = 15/1767 (1%)
Strand=Plus/Plus
Query 1 ATGAACTCGATGAATAACTGGTTAGGTTtctctctctctcCTCATGATCAAAATCACCAC 60
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1 ATGAACTCGATGAATAACTGGTTAGGCTTCTCTCTCTCTCCTCATGATCAAAATCATCAC 60
Query 61 CGTACCGATGTTGAGTCCTCCACCACCACAACCGCCGTAGATGTTGCCGGAGAGTACTGT 120
||||| |||||||| ||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 61 CGTACGGATGTTGACTCCTCCACCACCAGAACCGCCGTAGATGTTGCCGGAGGGTACTGT 120
Query 121 TTTGATCTGGCCGCTGCCTCCGATGAGTCTTCTGCCGTTCAAACATCTTTTGC-TTCTCC 179
||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 121 TTTGATCTGGCCGCTCCCTCCGATGAATCTTCTGCCGTTCAAACATCTTTT-CTTTCTCC 179
Query 180 TTTTGGTGTCGTCCTCGAAGCTTTCACCAGAGACAACAATAGTCACTCCCGAGATTGGGA 239
||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 TTTCGGTGTCACCCTCGAAGCTTTCACCAGAGACAATAATAGTCACTCCCGAGATTGGGA 239
Query 240 CATCAATAGTGGTGCATGCAGTAACATCCACAATAATGAACAAAATGGACCAAAGCTGGA 299
||||||| |||||||||||| |||||| ||||||| |||||||||||||||||||| ||
Sbjct 240 CATCAATGGTGGTGCATGCAATAACATTAACAATAACGAACAAAATGGACCAAAGCTTGA 299
Query 300 GAATTTTCTCGGCCGCAATACCACGATCTACAATACCAACAAGAACGTTGGAGATGGAAG 359
|||||| |||||||||| |||||||| |||||||||||| ||| ||||| ||||||||
Sbjct 300 GAATTTCCTCGGCCGCACCACCACGATTTACAATACCAACGAGACCGTTGTAGATGGAAA 359
Query 360 TGGCAGCTGTGAAGGACCTGGAGGTAGA-GACGGTGGTGGTGGCTCACTAGGCCTTTCGA 418
|||| | | || ||| ||||| ||| | |||||||| |||||||||||||||||||
Sbjct 360 TGGC-GAT-TG-TGGA---GGAGG-AGACGGTGGTGGTGGCGGCTCACTAGGCCTTTCGA 412
Query 419 TGATAAAAACATGGCTGAGTAACCATCCGGTGGCTAATGTTAATTATCAAGACAATGGTA 478
|||||||||||||||||||||| ||| |||| ||||||| |||| |||||||||||||||
Sbjct 413 TGATAAAAACATGGCTGAGTAATCATTCGGTTGCTAATGCTAATCATCAAGACAATGGTA 472
Query 479 ACGGTGCACGAGGCTTGTCACTCTCTATGAATTCATCTACTACCTGTGATAGCAACAACT 538
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 473 ACGGTGCACGAGGCTTGTCCCTCTCTATGAATTCATCTACTA---GTGATAGCAACAACT 529
Query 539 ACAACAACAATAATGATGTTGCCCAAGAGAATACTATTGTTGATGTCGTAGAAGCGACAC 598
||||||||||| ||||||| | ||||||||| ||||||||||||||||||||| | ||||
Sbjct 530 ACAACAACAATGATGATGTCGTCCAAGAGAAGACTATTGTTGATGTCGTAGAAACTACAC 589
Query 599 CAAAGAAAACTATTGAGAGTTTTGGACAAAGAACGTCTATATACCGCGGTGTTACAAGGC 658
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 590 CGAAGAAAACTATTGAGAGTTTTGGACAAAGGACGTCTATATACCGCGGTGTTACAAGGC 649
Query 659 ATCGGTGGACAGGAAGATACGAGGCACATTTATGGGATAATAGTTGCAAAAGAGAAGGCC 718
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 650 ATCGGTGGACAGGTAGATACGAGGCACATTTATGGGACAATAGTTGCAAAAGAGAAGGCC 709
Query 719 AGACTCGCAAAGGAAGACAAGTTTATTTGGGAGGTTATGATAAAGAAGAAAAAGCAGCTA 778
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 710 AGACTCGCAAAGGAAGACAAGTTTATCTGGGAGGTTATGACAAAGAAGAAAAAGCAGCTA 769
Query 779 GGGCTTACGATTTAGCCGCACTAAAGTATTGGGGAACCACTACTACTACTAACTTCCCCA 838
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 770 GGGCTTACGATTTAGCCGCACTAAAGTATTGGGGAACCACCACTACTACTAACTTCCCCT 829
Query 839 TGAGTGAATATGAGAAAGAGGTAGAAGAGATGAAGCACATGACGAGGCAAGAGTATGTTG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TGAGTGAATATGAGAAAGAGGTAGAAGAGATGAAGCACATGACGAGGCAAGAGTATGTTG 889
Query 899 CCTCTCTCCGCAGGAAAAGTAGTGGTTTCTCTCGTGGTGCATCGATTTATCGAGGAGTAA 958
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 CCTCTCTGCGCAGGAAAAGTAGTGGTTTCTCTCGTGGTGCATCGATTTATCGAGGAGTAA 949
Query 959 CAAGGCATCACCAACATGGAAGGTGGCAAGCTAGGATCGGAAGAGTCGCCGGTAACAAAG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 CAAGGCATCACCAACATGGAAGGTGGCAAGCTAGGATCGGAAGAGTCGCCGGTAACAAAG 1009
Query 1019 ACCTCTACTTGGGAACTTTCGGTACACAAGAAGAGGCTGCAGAAGCTTATGACATTGCAG 1078
|||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||
Sbjct 1010 ACCTCTACTTGGGAACTTTCGGCACACAGGAAGAGGCTGCTGAGGCTTATGACATTGCAG 1069
Query 1079 CCATTAAATTCAGAGGATTAAGTGCAGTGACTAACTTTGATATGAGCAGATACAATGTTA 1138
|||||||||||||||||||||| |||||||||||||| || |||| ||||||||||||||
Sbjct 1070 CCATTAAATTCAGAGGATTAAGCGCAGTGACTAACTTCGACATGAACAGATACAATGTTA 1129
Query 1139 AAGCAATCCTCGAGAGCCCGAGTCTACCTATTGGTAGTTCTGCAAAACGTCTCAAGGACG 1198
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1130 AAGCAATCCTCGAGAGCCCGAGTCTACCTATTGGTAGTTCTGCGAAACGTCTCAAGGACG 1189
Query 1199 TTAACAATCCGGTTCCAAG-TATGATGATTAGTAATAACGTTTCAGAGAGTGGAAATAAT 1257
|||| |||||||||||| | |||||||||||||||||||||||||||||||| |||||||
Sbjct 1190 TTAATAATCCGGTTCCA-GCTATGATGATTAGTAATAACGTTTCAGAGAGTGCAAATAAT 1248
Query 1258 GCTAGTGGTTGGCAAAACGCTGCGTTTCAGCATAACCAGGGAGTGGATTTGAACTTATTG 1317
| ||| |||||||||||| |||||||||||||| | |||||| ||||||||| |||||||
Sbjct 1249 GTTAGCGGTTGGCAAAACACTGCGTTTCAGCATCATCAGGGAATGGATTTGAGCTTATTG 1308
Query 1318 CAGCAACAGCAGGAGAGGTACGTTGGTTATTACAATGGAAGAAACTTGTCTACCGAGAGT 1377
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1309 CAGCAACAGCAGGAGAGGTACGTTGGTTATTACAATGGAGGAAACTTGTCTACCGAGAGT 1368
Query 1378 AGTAGGGTTTGTTTCAAACAAGAGGAGGAACAACAACACTTCTTGAGCAACTCGCCGAGC 1437
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1369 ACTAGGGTTTGTTTCAAACAAGAGGAGGAACAACAACACTTCTTGAGAAACTCGCCGAGT 1428
Query 1438 CTCATGACTAATGTCGATCATCATATCTCGACTTCTGATGATTCGGTTACCGTTTGTGGA 1497
| |||||||||||| |||||||||| |||||| ||||||||||| |||||||||||||||
Sbjct 1429 CACATGACTAATGTTGATCATCATAGCTCGACCTCTGATGATTCTGTTACCGTTTGTGGA 1488
Query 1498 AATGTCGTTAGTTATGGTGGTTATCAAGGATTTGCAATCCCTGTTGGAACATCGGTTAAT 1557
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1489 AATGTTGTTAGTTATGGTGGTTATCAAGGATTCGCAATCCCTGTTGGAACATCGGTTAAT 1548
Query 1558 TGTGATGTCTTCACTGCTGCTGAGATTGCTTACAACGCAAGAAATCGTTATTATTATGCT 1617
| ||| ||| |||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1549 TACGATCCCTTTACTGCTGCTGAGATTGCTTACAACGCAAGAAATCATTATTACTATGCT 1608
Query 1618 CAGCAGCAGCAACAACAGCAGATTCAGCATTCTCCGGGAGGAGATTTTCCGGTGGCGATT 1677
||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1609 CAGCATCAGCAACAACAGCAGATTCAGCAGTCGCCGGGAGGAGATTTTCCGGTGGCGATT 1668
Query 1678 TCGAATAACGTTAGCTCTAACATGTACTTTCATGGTGAAGGCGGTGGAGAAGGGGCTTCA 1737
||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||| ||
Sbjct 1669 TCGAATAACCATAGCTCTAACATGTACTTTCACGGGGAAGGTGGTGGAGAAGGGGCTCCA 1728
Query 1738 ACGTTTACAGTTTGGAACGACGCTTAG 1764
|||||| |||||||||||||| |||||
Sbjct 1729 ACGTTTTCAGTTTGGAACGACACTTAG 1755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87248547210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5