BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893671
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17580.1 | Symbols: | Phototropic-responsive NPH3 family pr... 2460 0.0
> AT5G17580.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr5:5795302-5797178 FORWARD LENGTH=1794
Length=1794
Score = 2460 bits (1332), Expect = 0.0
Identities = 1536/1633 (94%), Gaps = 20/1633 (1%)
Strand=Plus/Plus
Query 12 ATCATATGTATCAGATCTTCATATAAACGTAAAGGGTGTTCCATTTCATCTTTGCAAAGA 71
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 9 ATCATATGTATCAGATCTTCATATCAACGTTAAGGGTGTTCCATTTCATCTTTGCAAAGA 68
Query 72 AATGTTAGCAAAGAGATCGTCGAAAGTGAGCTCATTACTCGAGCGAAACGAGATCGATGA 131
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 69 AATGTTAGCAAAGAGATCGTCCAAAGTGAGCTCATTACTCGAGCGAAACGAGATCGATGA 128
Query 132 GCTGCGTTTGATCCTACGAGATTTAGAAGTCGATCCAGAAACCTTTGAGCTCGTTGAAAG 191
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 129 GCTGCGTTTGATCCTACGAGATTTAGAAGTCGATCCAGAAACCTTTGAGCTCGTCGCTAG 188
Query 192 ATTTTGTAATGGCTGTGAATTCAAGTTTACGTCTGATACCATCGTCTCTGTTCTCTGCAT 251
||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 189 ATTCTGTAATGGCTCTGAATTCAAGTTTACATCTGATACCATCGTCTCTGTTCTCTGCAT 248
Query 252 CGCGTATTACTTAGGGATGAATGAAGAACAAAGCTCTAATAACTTGTTGGGTAAGGCATC 311
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 249 CGCGTATTACTTAGGGATGAATGAAGAACAAAGCTCTAATAACTTGTTAGGCAAGGCATC 308
Query 312 TGAGTTCCTAGAGCAACGAGTTTTACCGAGCTGGAGTGAGACTGTAAATGCTCTTCGTTC 371
||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 309 TGAGTTCTTAGAGCACCGAGTTTTTCCGAGCTGGAGTGAGACAATAAATGCTCTTCGTTC 368
Query 372 AGGGGACAAGAGTTTCGACAAGCTAACTGATGTTGGACTCGTTGATCTCTTCTTTGATTC 431
||||||||||||||| ||||||||| ||||||||||||| |||||| | |||||||||||
Sbjct 369 AGGGGACAAGAGTTTTGACAAGCTAGCTGATGTTGGACTTGTTGATGTGTTCTTTGATTC 428
Query 432 CCTTATCGAAAAAGCCTCCTACGATCCAAGACTCCTTGGTGAACTGATCAAGAACAGAGT 491
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 CCTTATCGAAAAAGCTTCCTACGATCCAAGACTCCTTGGTGAACTGATCAAGAACAGAGC 488
Query 492 GGAAACCGATGATTATAGACCTAACCCTAGGAGACGATTGTTTGTTATAGATTGGAAATC 551
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 489 AGAAACCGATGATTATAGACCTAACCCTAGGAGAAGATTGTTTGTTATAGATTGGAAATC 548
Query 552 GGAAGATCTGATCACAATTCCACTTCGGTTATATGAACCTTTGATGATCCGAGCAATTAA 611
||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 549 GGAAGATTTGATCACAATTCCCCTTCGGTTATATGAACCTTTCATGATCCGAGCAATCAA 608
Query 612 ATCCCGCAGCATTCCCGTGGAATACATCGTTTTATCGGTCTGTAAATACGCGAAGAAATG 671
||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 609 ATCCCGCAGCATTCCTGTGGAATACATCGTGTTATCTGTCTGTAAATACGCGAAGAAATG 668
Query 672 GGTTTTCGATGCAGAAGAAAGCCTTTCAGGGCAAAAGAGAGAAGCAATTGAAGCGGTTGA 731
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 669 GGTTTTCGATACAGAAGAAAGCCTTTCAGGGCAAAAGAGAGAAGCAATTGAAGTGGTTGA 728
Query 732 GCGGCTTTTGCCACATCAGAGGGGGCTAATCTCTTGTGAACTCTTATTCGAATCGCTAAA 791
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 GAGGCTTTTGCCATATCAGAGGGGGCTAATCTCTTGTGAACTCTTATTCGAATCGCTAAA 788
Query 792 GCATTCGATCTGGTTAGAAGCCAACTCCGAATGTCGAAATGGATTCATGATCAGAATCTG 851
||||| |||||||||||||| | ||| ||||||| ||| ||||||||||||||||||||
Sbjct 789 ACATTCAATCTGGTTAGAAGCTAGCTCTGAATGTCAAAACGGATTCATGATCAGAATCTG 848
Query 852 CAAGCAACTCGACATGGCTAAATCAACAGATCTCAAGATTCTATCCCGAGGATACGGAGA 911
|||||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 849 CAAGCAGCTCGACATGGCTAAATCAACTGATCTCAAGATTCTATCCCGAGGTTATGGAGA 908
Query 912 AAAAGCTGAGGGTTACGAAAATATCGAGCTCGTTAAAACCGTCGTAAAGAGCTTTTACAC 971
|||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 909 AAAAGCTGAGGGTTTCGAAAATATTGAGCTCGTTAAGACCGTCGTAAAGAGCTTTTACAC 968
Query 972 TTACTACGCCAATGAAGACTCTGAAAATGTTTCACATTTCGTGAAAGTAGCAAAACTGTC 1031
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 969 TTACTACGCTAATGAAGACTCTGAAACTGTTTCACATTTCGTGAAAGTAGCAAAACTGTC 1028
Query 1032 GGAAGAATTTCTGTTCTTGGCTGCGAGTGAGGCTTCTCTGAAGCTCGAGGCGTTTGTGGA 1091
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1029 GGAAGAATTTCTGTTCTTGGCTGCAAGTGAGGCTTCTCTGAAGCTCGAGGCTTTTGTGGA 1088
Query 1092 GTTAGCAGAGATGACAGTGGCAATTTCGCAAGGTATTTTGAGCTACTCAGATGGGATTTA 1151
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1089 GTTAGCGGAGATGACAGTGGCTGTTTCGCAAGGTATTTTGAGCTACTCAGATGGGATTTA 1148
Query 1152 CAGAGGCATTGATGAATTCTTGGACAGCCACAGATACTTAACTGAATCAGAGAAGATGGA 1211
||||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1149 CAGAGCCATTGATGTATTCTTGGAGAGCCATAGATACTTAACTGAATCAGAGAAGATGGA 1208
Query 1212 AGTTTGTAAAGTTCTTGAATATAGTAAACTCTCTCAAGAAGGATGCGAGCGAGCCGCGAG 1271
|||||||||||||||||||| | ||||||||||||| ||||||| ||| ||||||||||
Sbjct 1209 AGTTTGTAAAGTTCTTGAATGTGGTAAACTCTCTCAGGAAGGATTCGAACGAGCCGCGAA 1268
Query 1272 AAACCAGAAGCTTCCTGTTAGAATCGTTGTTCAA-GTTTTGTTTGTTTCTCAGCTTCAGA 1330
|||||||||||||||| |||||||||||||| || ||||||| ||||||||||||||||
Sbjct 1269 AAACCAGAAGCTTCCTCTTAGAATCGTTGTT-AATGTTTTGTGCGTTTCTCAGCTTCAGA 1327
Query 1331 TACGTGATACAGTGGCTAAAGAGATTAAGGGTATGgaagagaaagtagatgaagaagaag 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 TACGTGATACAGTGGCTAAAGAGATTAAGGGTATGGAAGAGAAAGTAGATGAAGAAGAAG 1387
Query 1391 aaga-ga--ttggggtttcgagcgatgaagatgagatggagaagatgagTAATAAGCTGT 1447
|||| || ||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1388 AAGAAGAAATTGAGGTTTCGAGCGATGAAGATGAGATGGAGAAGATGAGTAATAAGTTAT 1447
Query 1448 TAGGACTTGAGATTAAGAATGATGAATGTGTTGTTCATCGTTGgaagaa---gacgaaga 1504
|||||||||||||| |||||||||||||||||||||||||| ||||||| || |||||
Sbjct 1448 TAGGACTTGAGATTGAGAATGATGAATGTGTTGTTCATCGTCGGAAGAATATGAAGAAGA 1507
Query 1505 agaagaaga---TAAGTGTGTGGGGACAAGTGAAGAGGAAGTTTGGTTGCTTGA---CTT 1558
||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1508 AGAAGAAGAAGATAAGTGTGTGGGGGCAAGTGAAGAGGAAGTTTGGTTGCTTGAATTCTT 1567
Query 1559 CTTCTTCTT---ATTCAGTTGATGCTTGCACCTGTGATGTCaagaagaagaagaagaaga 1615
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1568 CTTCTTCTTCTTATTCAGTTGATGCTTGCACCTGTGATGTCAAGAAGAAGAAGAAGAAGA 1627
Query 1616 agaTTCATCATCA 1628
||||||||||
Sbjct 1628 ---TTCATCATCA 1637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81073880175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5