BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893682
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17690.1 | Symbols: TFL2, LHP1 | like heterochromatin protei... 2013 0.0
> AT5G17690.1 | Symbols: TFL2, LHP1 | like heterochromatin protein
(LHP1) | chr5:5827171-5829682 REVERSE LENGTH=1816
Length=1816
Score = 2013 bits (1090), Expect = 0.0
Identities = 1264/1343 (94%), Gaps = 31/1343 (2%)
Strand=Plus/Plus
Query 1 ATGAAAGGGGCAAGT--AG-TGTTAAGAAGAAAACCCAGTTGTTGAACGAAGCTGGTGAG 57
||||||||||||||| | ||||||||||||| ||||| ||||||||||||||||||||
Sbjct 146 ATGAAAGGGGCAAGTGGTGCTGTTAAGAAGAAACCCCAGGTGTTGAACGAAGCTGGTGAG 205
Query 58 GCGGATACGGTAATGGAAACTGTCGGAGAAAGCCGGAAAATAAGCGGCGACGGTGGGTTT 117
||||| |||| ||||||| |||||||||||||||||||| || || ||||||||||||
Sbjct 206 GCGGAGACGGCGGTGGAAACAGTCGGAGAAAGCCGGAAAATTAGTGGAGACGGTGGGTTT 265
Query 118 GTCAGTGACGACGGCGGA---GGA---GGA----G--GTGGAGAGTTGATTCTTCGCGAG 165
| |||||||||||||||| ||| ||| | ||||||||| |||||||||||||
Sbjct 266 GGCAGTGACGACGGCGGAGGGGGAGGTGGAGGTGGAAGTGGAGAGTCGATTCTTCGCGAG 325
Query 166 ATGGGTGATGATAGGCGTAC---gga--g-gatgaagaagaagaagaggatgaggatgaa 219
|| ||||||||||||| ||| ||| | |||||||||||||||||||| |||||||||
Sbjct 326 ATTGGTGATGATAGGCCTACGGAGGATGGAGATGAAGAAGAAGAAGAGGACGAGGATGAA 385
Query 220 gacgatggaggagatgaggaagatgaagaaggagaaggaaaaggagggcaagaggaaagg 279
|| |||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 386 GATGATGGAGGTGATGAGGAAGATGAAGAAGGAGAAGGAGAAGGTGGGCAAGAGGAAAGG 445
Query 280 ccaaagcttgatgaaggGTTTTACGAAATTGAAGCTATTCGTCGTAAGAGAGTTCGAAAA 339
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 446 CCAAAGCTTGATGAAGGGTTTTATGAAATTGAAGCTATTCGTCGTAAGAGAGTTCGAAAA 505
Query 340 GGCAAGGTTCAGTATCTAATTAAATGGCGCGGGTGGCCCGAAACTGCCAACACATGGGAG 399
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 506 GGCAAGGTTCAGTATCTAATTAAATGGCGCGGATGGCCTGAAACTGCCAACACATGGGAG 565
Query 400 CCTTTAGAGAATCTCCAGTCTATTGCTGATGTTATAGATGCATTTGAAGGAAGTTTGAAG 459
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 566 CCTTTAGAGAATCTCCAGTCTATTGCTGATGTTATAGATGCCTTTGAGGGAAGTTTGAAG 625
Query 460 CCAGGAAAGCCTGGTAGGAAACGGAAGCGCAAATATGCAGGTCCTCATTCTCAGATGAAG 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 CCAGGAAAGCCTGGTAGGAAACGGAAGCGCAAATATGCAGGTCCTCATTCTCAGATGAAG 685
Query 520 AAGAAACAACGTTTAACATCTACATCACATGATGCTGCTGAGAAATCTGACTCTTCTACG 579
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 686 AAGAAGCAACGTTTAACATCTACATCACATGATGCTACTGAGAAATCTGACTCTTCTACG 745
Query 580 TCTCTCAACAACTCTAGCCTTCCTGACATTCCTGATCCACTAGACCTAAGCGGTTCGAGT 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 TCTCTCAACAACTCTAGCCTTCCTGACATTCCTGATCCACTAGACCTAAGCGGTTCGAGT 805
Query 640 CTACTAAA-AGGAGATGGGGAAG-GTAAGAATGCTTATGTATCCAACCAAGTTGAAGCTA 697
||| |||| | |||||| ||||| | |||||||||||||||||||||||||||||||| |
Sbjct 806 CTATTAAATA-GAGATGTGGAAGCG-AAGAATGCTTATGTATCCAACCAAGTTGAAGCCA 863
Query 698 ATAGCGGGAGTGTTGGGATGGTCCGACAACTTCGTTTAATTGA-AGATGAGAAAGAATAT 756
| || |||||||||||||||| ||||||| ||||||| ||||| | ||||||||||||||
Sbjct 864 ACAGTGGGAGTGTTGGGATGGCCCGACAAGTTCGTTTGATTGACA-ATGAGAAAGAATAT 922
Query 757 GATCCAACACTTAACGAGCTAAGGGGACCAGTCAATAATGGTAACGGTGCAGGATGTTCT 816
||||||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||
Sbjct 923 GATCCAACACTTAACGAGCTACGAGGACCAGTCAACAATAGTAACGGTGCAGGATGTTCT 982
Query 817 CAAGGAGGAGGCATTGGTTCTGAAGGTGATAATGTAAGACCCAATGGCCTTCTCAAGGTT 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 CAAGGAGGAGGCATTGGTTCTGAAGGTGATAATGTAAGACCCAATGGCCTTCTCAAGGTT 1042
Query 877 TATCCTAAGGAGCTTGATAAGAACAGTCGTTTCATAGGTGCTAAGCGGAGGAAGTCTGGT 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 TATCCTAAGGAGCTTGATAAGAACAGTCGTTTCATAGGTGCTAAGCGGAGGAAGTCTGGT 1102
Query 937 TCTGTGAAAAGATTCAAACAAGATGGATCCACAAGTAACAACCACACAGCACCTGCAGAT 996
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1103 TCTGTGAAAAGATTCAAACAAGATGGATCCACAAGTAACAACCACACAGCACCTACAGAT 1162
Query 997 CAGAATCTGACACCAGATTTGACTACATTAGACTCTTTTGGTAGGATTGCAAGGATGGGG 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 CAGAATCTGACACCAGATTTGACTACATTAGACTCTTTTGGTAGGATTGCAAGGATGGGG 1222
Query 1057 AATGAATATCCTGGTGTGATGGAAAATAATAATTTGTCTCAGAAAACCAAGATTGAGGAG 1116
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1223 AATGAATATCCTGGTGTGATGGAAAATTGTAATTTGTCTCAGAAAACCAAGATTGAGGAG 1282
Query 1117 TTGGACATCACAAAGATACTTAAACCGATGAGCTTTT-CAGCATCTGTATCAGACAATGT 1175
||||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 1283 TTGGACATCACGAAGATACTTAAACCAATGAG-TTTTACAGCATCTGTATCAGACAATGT 1341
Query 1176 CCAGGATGTGTTGGTGACCTTTTTAGCGCTGAGGTCTGATGGGAAGGAAGTGAT-GGTGG 1234
|||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1342 CCAGGAAGTGTTGGTGACCTTTTTAGCGCTGAGGTCTGATGGGAAGGAAGC-ATTGGTGG 1400
Query 1235 ACAACAGATTTCTCAAGGCTCACAATCCTCATCTGCTGATTGAATTCTATGAGCAACATC 1294
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1401 ACAACAGATTTCTCAAGGCTCACAATCCTCATCTCCTGATTGAATTCTATGAGCAACATC 1460
Query 1295 TCAAGTACAATCGCACGCCTTAA 1317
||||||||||||| |||||||||
Sbjct 1461 TCAAGTACAATCGAACGCCTTAA 1483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64808903595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5