BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg893685

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60620.1 | Symbols: CDS5 | cytidinediphosphate diacylglycero...   333    7e-91


> AT3G60620.1 | Symbols: CDS5 | cytidinediphosphate diacylglycerol 
synthase 5 | chr3:22406406-22408597 FORWARD LENGTH=1689
Length=1689

 Score =  333 bits (180),  Expect = 7e-91
 Identities = 304/360 (84%), Gaps = 24/360 (7%)
 Strand=Plus/Plus

Query  1    ATGGCGCCTTTTGTTGAAGTCTGTAGGTATAAGCC-TGTACCCCTCTCATTGAGCTCTCT  59
            ||||||||||||||||||||||||||||||||||| | |||| || ||||||||||||||
Sbjct  132  ATGGCGCCTTTTGTTGAAGTCTGTAGGTATAAGCCAT-TACCGCTTTCATTGAGCTCTCT  190

Query  60   CTGTACATGTCATTGCCGTTCCACT-CAGAGAAAATCTCTTCTTCTTCAC-CATTTCTCT  117
            ||||||||| | |||||||||| || || || |||| |||  |||||| | || ||||||
Sbjct  191  CTGTACATGCCCTTGCCGTTCCTCTCCA-AGGAAATATCTAATTCTTC-CTCAATTCTCT  248

Query  118  GAAAAGTATTTGAATTTGCGTCTCGTCGATCCCAAACCATTGTCTCATTCTCGCTGTAAT  177
            ||||||    |  |       | |  |||  ||  |   |||||||||||||||| || |
Sbjct  249  GAAAAG----T--A-------C-C--CGAAACC--ATTGTTGTCTCATTCTCGCTTTACT  290

Query  178  TGGATTTCTGTTAAACGGAGAGTTATCACGGCCGTTGCACGAGCTGAATCAAATCAAATT  237
              |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  291  CCGATTTCTGTTAACCGGAGAGTTATCACGGCCGTTGCTCGAGCTGAATCAAATCAAATT  350

Query  238  GGTGATGATGGCAACTCAAAGGAGGAACACGGCAGAGATCAAGAATTGCAAAATGTTGAA  297
            ||||| |||| |||||||||||||||||||  || |||||||||||||||||||||||||
Sbjct  351  GGTGACGATGCCAACTCAAAGGAGGAACACAACATAGATCAAGAATTGCAAAATGTTGAA  410

Query  298  GAAGATTCGAGTTTCGATTCTCAGGAGCAGAAGTCTAGAAGCCAGTTTAAGAAAAGAGTA  357
            |||||||||||||| |||  |||| |||| || |||||||||||||||||||||||||||
Sbjct  411  GAAGATTCGAGTTTAGATGATCAGAAGCAAAAATCTAGAAGCCAGTTTAAGAAAAGAGTA  470



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17040766911


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5