BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893696
Length=2280
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17790.1 | Symbols: VAR3 | zinc finger (Ran-binding) family ... 3299 0.0
> AT5G17790.1 | Symbols: VAR3 | zinc finger (Ran-binding) family
protein | chr5:5869710-5872718 REVERSE LENGTH=2424
Length=2424
Score = 3299 bits (1786), Expect = 0.0
Identities = 2127/2291 (93%), Gaps = 25/2291 (1%)
Strand=Plus/Plus
Query 1 ATGAACAACTCCACCAGActcatctccctcttctctcctcatcctcctcctctctttctc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 48 ATGAACAACTCCACCAGACTCATCTCCCTCTTCTCTCCTCATCCTCCTCCTCTCTTTCTA 107
Query 61 ctccGTGG-CATCTACATCACCCGCATAACCAATCTCCGCCGTTTCCACCGCCGGGCGTT 119
|||||||| | ||||||||| ||||||| ||||||||||||||||||||||||| |||||
Sbjct 108 CTCCGTGGTC-TCTACATCAGCCGCATAGCCAATCTCCGCCGTTTCCACCGCCGTGCGTT 166
Query 120 TACTCCTTCCTCCGTTGGCTCCAGCAATCGATGTTCTTCCCGTCCTTTCGTGTCTTTGCC 179
| ||||||| ||||||| ||| | ||||| |||||||| |||||| ||||||| |||||
Sbjct 167 TCCTCCTTCGTCCGTTGCCTCAACCAATCTATGTTCTTTCCGTCCACTCGTGTCATTGCC 226
Query 180 ACCGCTTATCCCCACGTTTCCCATTGGACGGTTCTACACTCAACAATTCCGTGTCTCCGC 239
|||||||||||||||||||| || ||||| ||||||| ||| ||| |||||||||||||
Sbjct 227 GCCGCTTATCCCCACGTTTCCTATAGGACGATTCTACAATCACCAAGTCCGTGTCTCCGC 286
Query 240 CGCAGATTTTGTTCCTTCTTATCACCACCACCAGCTACCTGAATGGACAGAGCTACTCCA 299
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 287 CGCAGATTTTGTTCCTTCTTATCACAACCAGCAGCTACCTGAATGGACAGAGCTACTCCA 346
Query 300 ATCTCTTTCCCAAA-CTGGTTACTTCTCAGATTCCGGTTCAATTTCCGGTTCAGAAAGTG 358
|||||| | ||||| ||||||||||||||||||||||||| ||||| |||| ||||||||
Sbjct 347 ATCTCTCT-CCAAAGCTGGTTACTTCTCAGATTCCGGTTCGATTTCTGGTTTAGAAAGTG 405
Query 359 AATTCTTTCCCGGTTATCCTGATGAACTTCTCCGTCCAGCTCTTGCTTGCCTATCTCTAG 418
||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 406 AATTCTTTCCCGGTTTTCCTGATGAACTTCTCCGTCCAGCTCTTGCTTGCTTAGCTCTAG 465
Query 419 CTCGTGATCGACCAGAATTACTTGAAATGCTTTCGAAGAGAGACGTTGAAGTGGTGGTGG 478
||||||| ||||||||| | |||||||||||||||| |||||||||||||||| ||||||
Sbjct 466 CTCGTGAACGACCAGAACTGCTTGAAATGCTTTCGAGGAGAGACGTTGAAGTGCTGGTGG 525
Query 479 AGAATGGGAAGCCATTTTTGTTTAGGGCTGGTCCAGATTCACTTAAAA-GATTGAGCCTT 537
||||||| ||||||||||| || | | | ||||||||||||||||||| || ||||||||
Sbjct 526 AGAATGGAAAGCCATTTTTATTCAAGACAGGTCCAGATTCACTTAAAAGGA-TGAGCCTT 584
Query 538 TACTTAAGAAGTGGTCGTCAGGGTATTGGTAAGATGATGGACATGGAGAAGGCGAGTACA 597
||| |||||||||||| |||||| ||||||||| ||||||| ||||||||||||||||||
Sbjct 585 TACCTAAGAAGTGGTCTTCAGGGCATTGGTAAGTTGATGGATATGGAGAAGGCGAGTACA 644
Query 598 GTTGATTTGATGAGGCTTCTTTTGAGTTATGTTGTTGATGTTGCTTCTTCTGAGGAGAGC 657
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 645 GTTGATTTGATGAGGCTTATTTTGAGTTATGTTGTGGATGTTGCTTCTTCTGAGGAGAGC 704
Query 658 AAACACCATAACCAAGAGATTATGGAGTCATCGGTTCGTAA-CCTCTTGAGTCAGATAGC 716
||||| |||||| ||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 705 AAACAACATAACAAAGAGATTATGGAGTCATCGGTTCG-AAGCCTCTTGAGTCAGATAGC 763
Query 717 GAAGATGAGCTTCCGTACTACTGAGCCGAATGTTCATGGCACTATGCAAAATCAGTTCTC 776
|||||||||||| ||| || ||||| |||||||||||| ||| ||||||||||||| |||
Sbjct 764 GAAGATGAGCTTGCGTCCTCCTGAGTCGAATGTTCATGACACGATGCAAAATCAGTACTC 823
Query 777 AGATAGAGATGGACAAGCAGTCGGGTCTTTTCAGAAGAACATTGAGATGAAACGTGGTGA 836
||||||||||||||||| |||| ||||||||||||| ||| |||||||||||||||||||
Sbjct 824 AGATAGAGATGGACAAGGAGTCAGGTCTTTTCAGAATAACGTTGAGATGAAACGTGGTGA 883
Query 837 CTGGATTTGCTTGAGGTGCAGTGGCATGAACTTTGCGAGAAATGTCAAATGCTTCCAGTG 896
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 CTGGATTTGCTCGAGGTGCAGTGGCATGAACTTTGCGAGAAATGTCAAATGCTTCCAGTG 943
Query 897 TGATGAAGCAAGACCGAAGAGACAGCTTACTGGTAGTGAATGGGAGTGTCCTCAATGTGA 956
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TGATGAAGCAAGACCAAAGAGACAGCTTACTGGTAGTGAATGGGAGTGTCCTCAATGTGA 1003
Query 957 TTTCTACAATTACGGGAGGAATGTAGCTTGCTTAAGATGTGACTGCAAGCGACCCACGGA 1016
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1004 TTTCTATAATTACGGGAGGAATGTAGCTTGCTTAAGATGTGACTGCAAGCGACCCAGGGA 1063
Query 1017 CTCTTCACTCAATTCAACCAACTCTGGTTATTCAAATGATCCTGAACTTGAGAGAAGACT 1076
|||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||||||||
Sbjct 1064 CTCTTCACTCAATTCAGCCAACTCTGATTATTCAAGTGACCCTGAACTTGAGAGAAGACT 1123
Query 1077 GGTCGAAAACGAAGAGAAAGCACAGAGGTGGTTTAGTAAAGTAGCACAGGGTGGTTCTGA 1136
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1124 GGTCGAAAACGAAAAGAAAGCACAGAGGTGGCTTAGTAAAGTAGCACAGGGTGGTTCTGA 1183
Query 1137 TCCAAACAGTGTTGATACAGATGAAGATTTTCCAAAGATTATGCCTTTGAGGAAAGGAGT 1196
| | |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1184 TGCGAACAGTGTTGATACAGATGAAGATTTCCCAGAGATTATGCCTTTGAGGAAAGGAGT 1243
Query 1197 GAATAGATATGTTGTTAGCACGAGGAAGACACCTCTTGAGAGAAGGTTGGCTAATACTGA 1256
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1244 GAATAGATATGTTGTTAGCACGAGGAAGCCACCTCTTGAGAGAAGGTTGGCTAATACTGA 1303
Query 1257 GAACAGTGTAGCTACAGATGGAAACTCGAATAGGAACGATGGTAAGGCTTTGGGAAGTAA 1316
|||||| ||||||||||||||||||||||| |||| ||| | ||| ||||||||||||||
Sbjct 1304 GAACAGAGTAGCTACAGATGGAAACTCGAAAAGGAGCGACGATAATGCTTTGGGAAGTAA 1363
Query 1317 AACAAATAGGAGCTTGAATGAGATTCTCGGTTCTTCATCTTCTTTGGCCTCTCGATCTGA 1376
||||| ||||||||||||||||||||| ||||||||||| |||||| | ||||| |||||
Sbjct 1364 AACAACTAGGAGCTTGAATGAGATTCTTGGTTCTTCATCCTCTTTGACTTCTCGTTCTGA 1423
Query 1377 TGACAAAAATGTATCTTCCAGTAGGTTTGAATCTTCCCAGGGAATAAACACTGATTTCGT 1436
|||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||| ||
Sbjct 1424 TGACAAGAATGTATCTTCCAGAAGGTTTGAATCTTCTCAGGGAATAAACACCGATTTTGT 1483
Query 1437 CCCATTCGTGCCACTACCTTCAGATATGTTTGCCAAGAAACCTAAGGAGGAAACACAGAT 1496
|| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1484 TCCTTTCGTGCCATTACCTTCGGATATGTTTGCCAAGAAACCTAAGGAGGAAACACAGAT 1543
Query 1497 AGGTCTGACTGACAACAACAACGAAATGGATGGTGTCTCAGGCGGCAATCAAAATGTCTA 1556
|||||||| |||||||| | | || |||||||| |||||||||||||||||||||||||
Sbjct 1544 AGGTCTGATTGACAACATC--C-AAGTGGATGGTTTCTCAGGCGGCAATCAAAATGTCTA 1600
Query 1557 TCAAAAGGACAAGTCAGATGCAAATCTCTCTGGCAAAGAAA-ATA--GCCTTGAAAAGGA 1613
|||| ||||||||||||||||||||| |||||||||||||| | | |||||||||||||
Sbjct 1601 TCAAGAGGACAAGTCAGATGCAAATCACTCTGGCAAAGAAACAGATCGCCTTGAAAAGGA 1660
Query 1614 TGGTCA-AGAATCAGAGGAACCTGCGAGGTGGTTCAAGA-GGGTCACCGAACTGCACAAC 1671
| ||| | |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1661 AGATCACA-AATCAGAGGAACCTGCGAGGTGGTTCAA-ACGGGTCACCGAACTGCACAAT 1718
Query 1672 GTTTCAGACTTGGAAAGCACAACACCGCAAGAGATTTCTCCTGATAAAATGCCAATGCGA 1731
|||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||
Sbjct 1719 GTTTCAGACTTGGAAAGCGCAATACCGCAAGAGATTTCTCCTGAGAAAATGCCTATGCGA 1778
Query 1732 GAAGGAGAGAATCGGTTTGTGGTGAGTAGGAAGAAAGACCGTTCGCTGACTTCTCCAGCA 1791
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1779 AAAGGAGAGAATCGGTTTGTAGTGAGTAGGAAGAAAGACCGTTCACTGACTTCTCCAGCA 1838
Query 1792 TACAAGAGGCCTTCACAAGATTCAGACTTTGTCCCCTTTGTCCCTTTCCCACCTGACTAT 1851
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 TACAAGAGGCC---AGAAGATTCAGACTTTGTCCCCTTTGTCCCTTTCCCACCTGACTAC 1895
Query 1852 TTCGCCAAAGAGAAACAACCCAAGGAACCAATAGATGCTATTCCAGCTCCGGCAACAGTA 1911
||||||||||||||||||||||||||| |||||||| || ||||||||||||| |||| |
Sbjct 1896 TTCGCCAAAGAGAAACAACCCAAGGAATCAATAGATACTCTTCCAGCTCCGGCGACAGAA 1955
Query 1912 AACGTTTCGAATGTAGTACAACAAGAACCAAGAGATCCTTCAAGCAACAAATCCGAAATA 1971
|||||||| | ||||||||||||||||||||||| ||||||| ||||||||| || | |
Sbjct 1956 AACGTTTCTCAGGTAGTACAACAAGAACCAAGAGAACCTTCAATCAACAAATCTGATACA 2015
Query 1972 GTGGCAGGGA-GTATCAGAAATGGAAAGAGCTTGGAGGGTTCGTTAGTGAAGGAGCCCGA 2030
||||||| || | |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 2016 GTGGCAGTGAAG-ATCAGAAATGGAAAGAGCTTGGAGGGTTCGTTAGTGAAGGAGTCAGA 2074
Query 2031 CTTGTTGGACATGTCAGAGGAAGCAAAAGCGGAGAGATGGTTTAAGAGAGTGGCTGAGAT 2090
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2075 CTTGTTGGACATGTCAGAGGAAGCAAAAGCAGAGAGATGGTTTAAGAGAGTGGCTGAGAT 2134
Query 2091 TAAGAACATATCAGAGCTGAGTCAGATCCCAGACGAAGATTTCCCATCAATAATGCCGAT 2150
|||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||
Sbjct 2135 TAAGAACATATCAGAGCTGAGTGAGATCCCAGACGAAGATTTCCCGTCGATAATGCCGAT 2194
Query 2151 GAGGAAAGGAGTGAATAGGTTTGTTGTCAGCAAGAGGAAGACTCCCTTGGAACGGCGTTT 2210
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2195 GAGGAAAGGAGTGAATAGGTTTGTTGTCAGCAAGAGGAAAACTCCCTTGGAACGGCGTTT 2254
Query 2211 AACTTCTCAACGACACCAGAGAAATCCTCAGATCACCGACTCTGATCCCAC-GGTTAAAG 2269
|||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| ||||
Sbjct 2255 AACTTCTCAACGACACCAGAGAAATCCTCATATCACCAACTCTGATCCCACTGGT-AAAG 2313
Query 2270 GAGATAAATGA 2280
|||||||||||
Sbjct 2314 GAGATAAATGA 2324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113152028430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5