BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893698
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17810.1 | Symbols: WOX12 | WUSCHEL related homeobox 12 | ch... 1175 0.0
> AT5G17810.1 | Symbols: WOX12 | WUSCHEL related homeobox 12 |
chr5:5880460-5882675 REVERSE LENGTH=996
Length=996
Score = 1175 bits (636), Expect = 0.0
Identities = 751/807 (93%), Gaps = 6/807 (1%)
Strand=Plus/Plus
Query 1 ATGGATCAACAAGGTGCATCGCATAGTCCATCCTCCACATCCACCGAACCAGTCCGGGCA 60
||| ||||| ||||||| || ||||| ||||||||||| |||||||||||||||||||||
Sbjct 74 ATGAATCAAGAAGGTGCTTCACATAGCCCATCCTCCACTTCCACCGAACCAGTCCGGGCA 133
Query 61 CGTTGGTCACCTAAACCGGAGCAAATCTTGATACTTGAATCTATCTTCAACAGTGGTACT 120
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 134 CGTTGGTCACCTAAACCGGAGCAAATCTTGATACTCGAATCCATCTTCAACAGTGGTACT 193
Query 121 GTTAACCCACCAAAAGACGAAACGGTGAGGATAAGAAAGATGCTTGAGAAATTCGGTGCA 180
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 194 GTTAACCCACCAAAAGATGAAACGGTGAGGATAAGAAAGATGCTTGAGAAATTCGGTGCT 253
Query 181 GTGGGAGACGCAAATGTCTTCTACTGGTTTCAAAATCGAAGGTCAAGATCTCGCCGGAGA 240
|||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 254 GTGGGAGACGCAAACGTCTTCTACTGGTTTCAAAACCGACGGTCAAGATCTCGCCGGAGA 313
Query 241 CAGCGGCAGCTCCAAGCAGCCACCGCCGCTGCTGTCACCTCCATAGGAGCTGAAGACCAC 300
|| |||||||| |||||||||| |||| || | |||||||||||||||||||||||||
Sbjct 314 CACCGGCAGCTTTTAGCAGCCACCACCGCAGCCGCCACCTCCATAGGAGCTGAAGACCAC 373
Query 301 CAGCACATGACGGCCATGAGCATGCATCAATATCCTTGCAGCAACAGCGAGATTGGTTTG 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 374 CAGCACATGACGGCCATGAGCATGCATCAATATCCTTGCAGCAACAACGAGATTGATTTG 433
Query 361 GGGTTTGGAAGTTATAGTAACTCATCAGCTAGTTACTTCCTTAATGGATCGTCTTCATCG 420
||||||||||||| ||| |||| |||||||| ||||||||||||||||||||| |||||
Sbjct 434 GGGTTTGGAAGTTGTAGCAACTTATCAGCTAATTACTTCCTTAATGGATCGTCGTCATCT 493
Query 421 CAAGTCCCTTCCTTTTTCCTCGGACTCTCTTCTCCAAGTGGTGAGTATGAGAGCAACAAT 480
||| ||||||||||||||||||| ||||||||| ||||||||| || ||||| |||||||
Sbjct 494 CAAATCCCTTCCTTTTTCCTCGGCCTCTCTTCTTCAAGTGGTGGGTGTGAGAACAACAAT 553
Query 481 GGTATGGAGAATCTCTTCAAAATGTATGGCCACGAATCTG------ATCATCAGCAGCAG 534
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 554 GGTATGGAGAATCTCTTCAAAATGTATGGCCATGAATCTGATCATAATCATCAGCAGCAG 613
Query 535 CATCACAGCTCAAATGCTGCATCAGTTTTAAACCCGTCTGTTCAAAACTCCAATTTCCAA 594
||||| ||||||||||||||||||||||||||||| |||| |||||||||||| | ||||
Sbjct 614 CATCATAGCTCAAATGCTGCATCAGTTTTAAACCCATCTGATCAAAACTCCAACTCCCAA 673
Query 595 TACCAAGAAGAAGGGTGTATGACGGTGTTTATAAACGGAGTTCCGACGGAAGTAACAAAA 654
||| || ||||||||| ||||||||||||||||||||||||||| | |||||||||||||
Sbjct 674 TACGAACAAGAAGGGTTTATGACGGTGTTTATAAACGGAGTTCCTATGGAAGTAACAAAA 733
Query 655 GGAGCAATAGACATGAAAGCAATGTTCGGTGAAGATTCGGTGTTACTTCATTCCTCTGGT 714
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 734 GGAGCAATAGACATGAAAACAATGTTCGGTGATGATTCGGTGTTACTTCATTCCTCTGGT 793
Query 715 CTTCCTCTTCCCACTGATGAGTTTGGTTTCTTGATGCATTCTTTACAACATGGCCAAGCT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 794 CTTCCTCTTCCCACTGATGAGTTTGGTTTCTTGATGCATTCTTTACAACATGGACAAACT 853
Query 775 TATTTCCTGGTACCGAGACAGACATGA 801
|||||||||||||||||||||||||||
Sbjct 854 TATTTCCTGGTACCGAGACAGACATGA 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5