BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893700
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17830.1 | Symbols: | Plasma-membrane choline transporter f... 1772 0.0
> AT5G17830.1 | Symbols: | Plasma-membrane choline transporter
family protein | chr5:5893382-5895572 FORWARD LENGTH=1630
Length=1630
Score = 1772 bits (959), Expect = 0.0
Identities = 1231/1357 (91%), Gaps = 40/1357 (3%)
Strand=Plus/Plus
Query 121 CAACCCGTAACTCCTCCCGCCGCACAGC-A-A-C--C-GCAACCGCAACAACAAACACTA 174
||||| |||||||||||||||||||||| | | | | |||||||||||| |||||||||
Sbjct 79 CAACCAGTAACTCCTCCCGCCGCACAGCAACAGCAACAGCAACCGCAACAGCAAACACTA 138
Query 175 ACCGGAAGATTCTTCCGATGCCTCTTCACTTGTATCTTCTACACGCAACTAACCCTAATC 234
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 TCCGGAAGATTCTTCAGATGCCTCTTCACTTGTATCTTCTACACGCAACTAACCCTAATC 198
Query 235 TCGATCTTCGTGATCCTTCTCACGCTACGAGGTCTCGTCTGCACCAAAACACCAAACTTC 294
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 199 TCGATCTTTGTGATCCTTCTCACGCTACGAGGTCTCGTCTGCACCAAATCACCAAACTTC 258
Query 295 CATCCCAAGAAATGGTACACTCCTCTGTTATCCTCTGTTGCTGTCTCCGGAATCCTCTCT 354
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 259 CATCCCAAGAAATGGTACACTCCTCTGTTATCCTCTGTTGCTGTCTCCGGAGTCCTCTCT 318
Query 355 GTAGCCTGGAATTGCTTCTTCGTCTGCAACATACGAGCCACAGTCAAAGCAACGTTCTGG 414
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 ATAGCCTGGAACTGCTTCTTCGTCTGCAACATACGAGCCACAGTCAAAGCAACGTTCTGG 378
Query 415 TTCTCACCGTTACTCACACTCTCCGTCGGGCTCTTCCTAATTCTC-TACGACAAATCCAA 473
||| |||||||| ||||| ||||||| |||||||||||||||||| | ||||||||||||
Sbjct 379 TTCACACCGTTATTCACAATCTCCGTGGGGCTCTTCCTAATTCTCCT-CGACAAATCCAA 437
Query 474 TCCCGTTGTTCTATGTATAGGTGCACTTATTGT-TGTCTATAGCATCGTTACGGAAATGT 532
|||||| |||||||| |||||||||||| |||| | ||||||||||||| || | | |||
Sbjct 438 TCCCGTCGTTCTATGGATAGGTGCACTTCTTGTCT-TCTATAGCATCGTCACCGCAGTGT 496
Query 533 ATGGCGGGCTTTACGTCAGGAACAAGTATGAATTCACCTTCAAGATGATGTCAATCGCCA 592
|||| |||| |||||| ||||| | |||||||||||||| ||| |||||||| |||||
Sbjct 497 ATGGTTCGCTTCACGTCACGAACAGGCATGAATTCACCTTCCAGACGATGTCAACCGCCA 556
Query 593 CAGGGATGTTACCAACAAGAACCAGAGCAATAGCAATTGTATCAGTGATCATAAGCGTCT 652
||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 557 CAGGGATATTACCCGCAAGAACCAGAGCAATAGCAGTTGTATCAGTGATCATAAGCGTCT 616
Query 653 TTTACTCTGGTTTCTTGGTTGCTGGAATCGGTGGAGCTACTGCTACAAGAACACGTCTTG 712
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 617 TTTACTCTGATTTCTTGGTTGCTGGAATCGGTGGAGCTACTGCTACAGGAACACGTCTTG 676
Query 713 ATATTCTTTTCATCTCTATCATCGTGATAAGCCTTGCCTGGACAATGCAGGTTCTCAAAA 772
|||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 677 ATATTCTTTTCATCTCCATCATCGTGATAAACCTTGCCTGGACAATGCAGGTTATCAAAA 736
Query 773 ACGTACAAGAAGTGGCGATTTCGAAAGCTACT-TATGTATACTTTAGGCGTGATGAGGTC 831
||||||||||||| |||||||||||||| | | |||||||||||||| |||||||| ||
Sbjct 737 ACGTACAAGAAGTCGCGATTTCGAAAGCCA-TATATGTATACTTTAGCCGTGATGATCTC 795
Query 832 ATGAATGCATGTGATGCTCTTGGTGTCACTCTGAAAAAACAGCTAGGGATTGTTTGTATT 891
||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||
Sbjct 796 ATGAATGCATGTGATGCTCTTGGCGTCACTCTGAAAAAGCAGCTCGGGAGTGTTTGTATT 855
Query 892 GGTTCAACACTCGTTCCACTTATTGTACTCTATAGGGGAATGATTCGGGGTTTTAATCTG 951
||||||||||| ||||||||||||||||||| |||||||| ||||||| ||| ||||| |
Sbjct 856 GGTTCAACACTTGTTCCACTTATTGTACTCTTTAGGGGAACGATTCGGTGTTGTAATC-G 914
Query 952 CAAGGCAGGTGTGACGACGATCAGGAGATGTATGAAAGTACTCGAGGCTGCAATTGGATT 1011
|| | | | | | |||| |||||| | ||||||||| ||||||
Sbjct 915 ---GG-A-------C-A---T-------T-TATGCAAGTACCCCAGGCTGCAACTGGATT 951
Query 1012 GCCAATCATATTATTTTGTGTGGAAATAGATATGGATTTGTTCATGTGGGAGCTTACAAA 1071
||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| ||||
Sbjct 952 GCCAATCATATCATTTTGGGTGGAAATAGATATGGATTTGTTCACGTGGGAGCTCACAAC 1011
Query 1072 AAAGGGTTTAAG-CAAGCGTCTAGTGATACCTGGAGGAGGTTTAGAACAGTCGCTGGATT 1130
|||||||| ||| |||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct 1012 AAAGGGTT-AAGGCAAGCGTCTAGTGATACCTGGAGGAGGTTTAGAACAATCCCTGAATT 1070
Query 1131 TGAGCAGTTGATTGATTTTGACATCACCAGCTCCATCTGTTTCTCTAGCGCCATGGGAAT 1190
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1071 TGAGCAGTTGATTGATTTTGACATCACCAGCTCCATCTGTTTCTTTAGCGCCATGGGAAT 1130
Query 1191 TGGTGCAGTCTCTGCATTGACTGCACGAATATGGGAGCTTCTGATTGATAGGGATCACTA 1250
||||||| || ||||||| |||||| || |||||||||||||||| |||| |||||||||
Sbjct 1131 TGGTGCAATCGCTGCATTAACTGCAGGAGTATGGGAGCTTCTGATCGATAAGGATCACTA 1190
Query 1251 CTTTGAGCTGACTATCTACGCTTTCATCATCGGATACTTTGTGGGGAGAGTTTCATCTGC 1310
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1191 CTTTGAGCTGACTATCTATGCTTTCATCATCGGATACTTTGTGGGGAGAGTTTCTTCTGC 1250
Query 1311 GTGGCTACAAGCTTGTGTGATGGGTTACTATGTAGCTTATTCTGAGGATCCACAGAGCGA 1370
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1251 GTGGCTACAAGCTTGTGTGATGGGTTACTATGTAGCTTATTCTGAAGATCCACAGAACGA 1310
Query 1371 TAAGTTTGATAACACGATTCCA-AACCGTATTGAGCGGCAAAATATCGAAAAGGCAAAAA 1429
|| ||||||| ||||||||||| ||| |||| ||||| ||||| ||||||||||||||||
Sbjct 1311 TAGGTTTGATGACACGATTCCACAAC-GTATCGAGCGACAAAAAATCGAAAAGGCAAAAA 1369
Query 1430 GAGAAGTCGAGCATAATAGAGTCCTGGAAGTTGATGA 1466
||||||||||| |||||||||| | ||||| ||||||
Sbjct 1370 GAGAAGTCGAGGATAATAGAGTGCAGGAAGATGATGA 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73845001695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5