BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893705
Length=3507
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17880.1 | Symbols: CSA1 | disease resistance protein (TIR-N... 1476 0.0
AT5G45250.1 | Symbols: RPS4 | Disease resistance protein (TIR-N... 518 2e-145
> AT5G17880.1 | Symbols: CSA1 | disease resistance protein (TIR-NBS-LRR
class) | chr5:5908874-5913099 REVERSE LENGTH=3597
Length=3597
Score = 1476 bits (799), Expect = 0.0
Identities = 2387/3124 (76%), Gaps = 228/3124 (7%)
Strand=Plus/Plus
Query 12 CGGTAAGCCATCCCAAGACCAAGTGTTCATTAACTTCCGGGGAGTGGAACTGCGGTACAA 71
|||| || || ||||||| |||||||||||||| ||||| ||||| |||||||| | ||
Sbjct 36 CGGTGAGACACCCCAAGATCAAGTGTTCATTAATTTCCGTGGAGTCGAACTGCGCAAGAA 95
Query 72 CTTTGTGAGTCATCTCAAGAAGGGCTTAAAAA-GAAATGGAATCAATGCCTTTATAGACA 130
||| || |||||||| ||||||||||||||| |||| || ||||||||||| |||||||
Sbjct 96 CTTCGTCAGTCATCTGGAGAAGGGCTTAAAAAGGAAA-GGGATCAATGCCTTCATAGACA 154
Query 131 CAGATGAAGATATGGGCCAAGAATTGAATATTCTGCTCAAAAGAATCGAAGGTTCGAAGA 190
|||||||||| ||||||||||| |||| | |||||||| ||||||| |||||||||| ||
Sbjct 155 CAGATGAAGAGATGGGCCAAGAGTTGAGTGTTCTGCTCGAAAGAATAGAAGGTTCGAGGA 214
Query 191 TAGCTCTAGCGATATTCTCCCCGAGGTACACAGAGTCAGACTGGTGTCTGAAGGAGCTGG 250
| || ||||| || ||||| || |||||||| |||||| | |||||| |||||||||| |
Sbjct 215 TCGCGCTAGCCATTTTCTCTCCAAGGTACACGGAGTCAAAATGGTGTTTGAAGGAGCTTG 274
Query 251 CTAAAATGAAGGAATGCAGGGAGC--AAGGCAAGCTCGTGGTGATTCCAATCTTTTACAA 308
| || ||||| ||| | | ||| | |||| |||||||||||||||||||||| |||||
Sbjct 275 CGAAGATGAAAGAAAGAACGGAACAAAAGG--AGCTCGTGGTGATTCCAATCTTCTACAA 332
Query 309 GGTTGAG-CCTTCCACTGTTAAAAG-ACAGAAAGGCGAGTTCGGTGACAATTTCAGGGAT 366
||| || || | ||||||| |||| | ||| || || ||||| || || ||||||||
Sbjct 333 GGTACAGCCCGT-CACTGTT-AAAGAATTGAAGGGAGACTTCGGGGATAAGTTCAGGGAG 390
Query 367 CTTGTTG-AGTTTATTGATGAGGAGACCAAG-AACAACTGGACA-GAAGCTTTA-AAGTC 422
| || || ||| || ||| || |||| ||| || || |||| | ||||||||| || |
Sbjct 391 C-TGGTGAAGTCTACTGACAAGAAGACGAAGAAAGAA-TGGA-AGGAAGCTTTACAA-TA 446
Query 423 TATTCC-TCTCTTAACGGGTTTCGTGTTAAACGAGAATAGCGACGAGGACGATCTCATC- 480
| |||| | | ||||| || ||||||| | ||||| ||||| |||||||| |||||
Sbjct 447 TGTTCCAT-TTTTAACCGGCATCGTGTTGGATGAGAAAAGCGATGAGGACGAAGTCATCA 505
Query 481 TTCA-AAGTTGTCAAGGAA-GTT-AAGAAAGCGTTGAATATCA-TTTCACG-GGCACCTC 535
| | || || || | || ||| |||||| | |||| | |||| | || ||||
Sbjct 506 AT-ATAA-TTATC-CGAAAGGTTAAAGAAA-TACTAAATA-GACGTTCA-GAGGGTCCTC 559
Query 536 CTAATCGCCTAGAAGGTACTGTTCTTTC-CTCGACAGTACACCAGAAAAAACTTGAGA-G 593
|| | ||| || || ||| || | | | | || |||||||||| | ||| |
Sbjct 560 CT--T---CTA-AATGTTCTGCACTACCGCCCCAAAG-ACACCAGAAACGTCATGAAACC 612
Query 594 TTCGTGTGGAGTTGA-CTTACGTCTAAAGCAACTTGAAGAAAAGTTAAGCTTCGGGTTTG 652
|| || ||| | || | | || | |||||||| |||||||||||| | || |||| |
Sbjct 613 TT-TTGGGGAATCGAGC-TCCGAATTAAGCAACTAGAAGAAAAGTTACGTTTTGGGTCGG 670
Query 653 AGGACACAACTCGTATCATTGGGGTTGTTGGGATGCCTGGCATTGGTAAAACTACTCT-G 711
| || |||||||||| ||| || |||||||||||||| || || |||||||| ||||| |
Sbjct 671 ACGAAACAACTCGTACCATCGGTGTTGTTGGGATGCCCGGTATAGGTAAAACCACTCTCG 730
Query 712 GTCAAGAAGTTATACGAGAAACT-CAA-GA-ACGAATTCTTGAGCCACGTGTTAATCC-T 767
| | || | |||| ||| || | || || | | |||| |||| ||||||||||||| |
Sbjct 731 CT-ACGATGCTATATGAG-AAGTGGAATGATA-G-ATTCCTGAGACACGTGTTAATCCGT 786
Query 768 AGATATCCATGAAACTTCAAG-GGAACAAGGCTTGAGTTACTTGCCCAC-AATACTCTTG 825
|||||||||||| |||| || |||| | || || | ||||||| |||| || | |||||
Sbjct 787 -GATATCCATGAAGCTTC-AGAGGAAGACGGGTTAAATTACTTGGCCACGAA-ATTCTTG 843
Query 826 GAAGATTTACTCAAAGTCAAGAATCCCATGTTTGAGACCGTCCAGGCTGCTCATGAAGGT 885
||| |||| | ||||| ||||| ||| | ||| |||| || ||||||||||||| |
Sbjct 844 CAAGGTTTATTGAAAGTTGAGAATGCCAACATCGAGTCCGTACAAGCTGCTCATGAAGCT 903
Query 886 TACAAGGATCAACTACTCAAAACCAAA-TCACTTGTTATACTCGACCATGTTAGTAACAA 944
||||| ||||| ||||| | |||||| || |||||||| || ||| |||| ||||||||
Sbjct 904 TACAAAGATCAGTTACTCGAGACCAAAGTC-CTTGTTATTCTTGACAATGTCAGTAACAA 962
Query 945 GGAACAAATTGCTGCTATACTCGGCAAATGTGATTGGATTAA-ACAGGGGAGCAAGA-TC 1002
||| ||| ||| |||| | || ||| || | | |||||||| | | || ||||||| ||
Sbjct 963 GGACCAAGTTGATGCTCTTCTTGGCGAACGCAACTGGATTAAGA-AAGGAAGCAAGATTC 1021
Query 1003 GTCATTGCAACAGGTGATACGTC---CCTGATAC-ATGATTTGGTCGATGATATTTACCA 1058
||||| | ||| | || | ||| |||||| | | ||||||| |||||| |||| |
Sbjct 1022 -TCATTACTACAAGCGACAAGTCATTGATGATACAAAG-TTTGGTCAATGATACTTACGA 1079
Query 1059 AGTCCCTCAATTAAGCTATAAAGACAG-TTTACAACAATTTACCCATTATGCCA-TTGGT 1116
|||||||| ||||||| | ||||| | || |||| |||| | ||| | || ||| |
Sbjct 1080 AGTCCCTCCATTAAGCGACAAAGA-TGCCATAAAACATTTTATACGTTACG-CATTTGAT 1137
Query 1117 -G-ATC-AA--AGC-AAT----G---C--TC-A-G-AGTTTCTTGAAGCTGTCGATAGAT 1158
| | | || ||| | | | | | | | |||| ||| |||||| ||||
Sbjct 1138 GGTAACGAAGGAGCTGCTCCCGGCCCCGGGCAAGGAAATTTCCCCAAGTTGTCGAAAGAT 1197
Query 1159 TTCGTGCATTACACCAAAGGAAATCCACTAGCTCTAAAGGTATTGGGTGCTGAGCTTCTG 1218
||||||||||| || |||||||||||||||||||| || | |||||| |||||| ||
Sbjct 1198 TTCGTGCATTATACTAAAGGAAATCCACTAGCTCTCCAGATGTTGGGTAAGGAGCTTTTG 1257
Query 1219 GGGAAAGACGAGTCTCTCT-GGAATTCAAAATTGGATTC-TCT-GAGTCAGCACCATAA- 1274
|||||||| ||| || || || || |||| | || | | | || ||| ||||||||
Sbjct 1258 GGGAAAGATGAGAGTCACTGGGGCTT-AAAACTAAATGCAT-TGGA-TCAACACCATAAC 1314
Query 1275 AGGTCGAGCAAGAAGCTCTAGAAAGATACGAGCACAGAGC-TCTAGTGAGATGCTTCAAA 1333
| ||| | | | || | || || | ||| | | | ||||||||||||
Sbjct 1315 A-GTC---C----A-C-CT-----G----GA-CA-A-AGCAT-TTGCAAGATGCTTCAAA 1351
Query 1334 GTGTTTGGAAAGAGTGCTATGATGGTCTTAGTCAGCAACAACAAGATACACTTCTTGACA 1393
| || ||| ||| | | ||| | | || ||||| || || ||||| ||||||||||||
Sbjct 1352 GGGTCTGGGAAGGGAGTTATAAAGCACTGAGTCAAAAAGAAAAAGATGCACTTCTTGACA 1411
Query 1394 TAGCTTGCTTCAGGTCGCTGGACAAGAATTATGTAGCAAGTTTATTAGATTCACATGATG 1453
|||||||||||||||||| || ||||||| ||||| |||||||| |||| || ||||
Sbjct 1412 TAGCTTGCTTCAGGTCGCAAGATGAGAATTACGTAGCGAGTTTATTGGATT--CA-GATG 1468
Query 1454 CAAATTCCACTGAAGCTAGGATTGAAATCGAGAA-A-CTAATGAACAAGTTTC-TGATTA 1510
|| || || || | | | || | ||| | || |||||||| ||| ||||||
Sbjct 1469 -----GCC-CT--AG-TA--A-T-ATATTG-GAAGATCTCGTGAACAAG-TTCATGATTA 1513
Query 1511 CTATATCTGCCGGCAAAATAGAGATGCATGATACACTACATATGTTTTGTAAGGAAGTTG 1570
||| | ||| |||||| |||| |||||||||||| | ||||| | | |||||| |||
Sbjct 1514 ATATTTATGCTGGCAAAGTAGATATGCATGATACATTGTATATGCTCTCCAAGGAACTTG 1573
Query 1571 GTAGGGAAGCCACAGCTCCAGATGGAAAAGGGCTGCGA-AGGTTGTGGGACTATCATACG 1629
|| | ||||| || ||| ||||| |||| |||| || | ||||||||| || |||| ||
Sbjct 1574 GTCGAGAAGCTACTGCTACAGATAGAAAGGGGCGGC-ATAGGTTGTGGCACCATCACACC 1632
Query 1630 ATAATTGATGTGTTAGAGAACAATAAGGGA-GTT-T-CTGTCAGATCCATTTTCCTTGAT 1686
||||||| |||| | || || || |||||| ||| | | |||| || |||||||||||
Sbjct 1633 ATAATTGCTGTGCTGGACAAAAACAAGGGAGGTTCTAATATCAGGTCTATTTTCCTTGAC 1692
Query 1687 TTGGCTGATCTTAACATGAATAAT--AGCTTAC-A-CAGTCAAGCATTTAACTTGATGAG 1742
||| ||||| || ||| ||| ||| |||| | | | | || || ||| | |||||||
Sbjct 1693 TTGTCTGATATT-ACAAGAA-AATGGTGCTT-CTATC-GCCATGCTTTTGCCATGATGAG 1748
Query 1743 CAATATACGGT-TCCTCAAAATCTACAACACTTGTTGTCCTCAAGAATGTGACCGTGACA 1801
|| || | | | ||||||||||||| |||| |||||||||||||||||| ||||||
Sbjct 1749 GGATCTAAGATAT-CTCAAAATCTACAGCACTCATTGTCCTCAAGAATGTGAAAGTGACA 1807
Query 1802 TTATGCTGAAA-TTCCCGGATGGGCTCGAGCTCCCATTTG-ATGAGCTGCGATGTCTCCA 1859
||| | ||| ||||| || || ||| ||| || ||| ||||| |||||| ||||||
Sbjct 1808 TTA-AATTAAACTTCCCCGAAGGACTCCTGCTACC-GTTGAATGAGGTGCGATATCTCCA 1865
Query 1860 CTGGCTGAAATTCCCACTGAAAGAAGTTCCACCAGATTTCGACCCAAAG-AATCTT-GTG 1917
||||||||||||||| | ||||||||||||| ||||||| |||| | ||| || ||
Sbjct 1866 CTGGCTGAAATTCCCGTTAAAAGAAGTTCCACAAGATTTCAACCC-GGGTAAT-TTGGTT 1923
Query 1918 GACCTTAAGCTTCATTACAGCGAGATTGAACGAGTTTGGGAGGGTAATAAGGATGCATCG 1977
||||||||||||| ||| ||||||||||||||||||||||| | ||| ||||||||| |
Sbjct 1924 GACCTTAAGCTTCCTTATAGCGAGATTGAACGAGTTTGGGAAGATAACAAGGATGCA-CC 1982
Query 1978 AAACTT-AAATGGATAGACTTCAACCACTC-AAGAAAGTTGTGTACCTTGTCAGGATTAG 2035
||| || |||||| || |||| || ||||| ||| |||||| || ||| |||| ||||
Sbjct 1983 AAAATTAAAATGGGTAAACTTAAATCACTCAAAG-AAGTTGAACACTTTGGCAGGGTTAG 2041
Query 2036 CCGAGGCTCGAAATCTTCAAGAATTGAACCTTGAAGGCTGCATAGCATTGGCCACA-TTG 2094
| |||| |||||||||||| | || |||||||| |||| ||||| | | | ||
Sbjct 2042 GAAAAGCTCAAAATCTTCAAGAGCTAAATCTTGAAGGTTGCACGGCATT-GAAAGAGATG 2100
Query 2095 CCCCAGGATATGGAAAATATGAAGTGTCTTGTTTTCTTGAACCTCAGAGGCTGCACAAGT 2154
| |||||||||||||||||||| |||||||||||||||||| ||||| |||||||||
Sbjct 2101 CATGTGGATATGGAAAATATGAAGTTTCTTGTTTTCTTGAACCTGAGAGGATGCACAAGT 2160
Query 2155 CTCAAGTATCTTCCAGAGATTAACTTGATATCTCTGGAAACTCTCATCCTCAGCGACTGT 2214
||||||| ||||||||||||| | ||||| ||| || |||||||||||||||| | |||
Sbjct 2161 CTCAAGTCTCTTCCAGAGATTCAGTTGATCTCTTTGAAAACTCTCATCCTCAGTGGCTGC 2220
Query 2215 TCAAAATTTAAGGTATTTAAGGTGATTTCAGAAAAGCTAGAAGCAATATACTTGGATGGC 2274
||||||||||| ||| |||| |||||||| ||||| |||||| |||||||||||||
Sbjct 2221 TCAAAATTTAAAACCTTTCAGGTTATTTCAGATAAGCTGGAAGCACTATACTTGGATGGA 2280
Query 2275 ACTGCGATAAAGGAACTTCCTTCTGACATTCGGA-ATCTCCAAAGACTTGTCT-TATTAA 2332
||||| |||||||||||||||| ||||||| ||| | |||||||||||||| | | || |
Sbjct 2281 ACTGCAATAAAGGAACTTCCTTGTGACATTGGGAGA-CTCCAAAGACTTGT-TATGTTGA 2338
Query 2333 ACATGAAAGGCTGCAAGAAGCTGAAAACACTTCCTGACAGTCTTGG-CGAACTAAAAGCT 2391
||||||||||||||||||||||||||| || |||||||||||||| | | || ||||||
Sbjct 2339 ACATGAAAGGCTGCAAGAAGCTGAAAAGGCTCCCTGACAGTCTTGGTC-AGCTGAAAGCT 2397
Query 2392 CTTCAAGAACTGATACTCTCTGGCTGTTCAAAGCTCAAA-AGTTTTCCAGAAG-TTGCGA 2449
||| ||||||| || |||||||| |||||||||||||| ||||| |||||| ||| |
Sbjct 2398 CTTGAAGAACTTATCCTCTCTGGTTGTTCAAAGCTCAATGAGTTT-CCAGAAACTTGGGG 2456
Query 2450 AAAACATGAACCGTCT-AGAGATTTTACTTCTAGATGAAACAGCTATCAAAGAAATGCCA 2508
||| ||||| ||| || |||||| || ||||| ||||| |||||||| ||||| |||||
Sbjct 2457 AAA-CATGAGCCG-CTTAGAGATCTTGCTTCTGGATGAGACAGCTATAAAAGATATGCCG 2514
Query 2509 AATATATTCTCTC-TGCGGTAC-TT-ATGCCTAAGTA-GAAATGAAAAGAT-ATGCCGCC 2563
|| ||| |||| | |||| | | || |||| ||| | ||| ||||||||| | ||||||
Sbjct 2515 AAGATACTCTC-CGTGCG-T-CGTTTATGCTTAAACAAGAA-TGAAAAGATCA-GCCGCC 2569
Query 2564 TCCCAGAGAACATCAGCCAATTTTCTCGACTGAAATGGCTTGATATGAAGTACTGTAA-A 2622
| ||||| | ||| ||||||||| ||| |||||||| || ||||||| ||||| |
Sbjct 2570 TTCCAGATCTCCTCAATAAATTTTCTCAACTTCAATGGCTTCATTTGAAGTATTGTAAGA 2629
Query 2623 AGCCTTACATATCTTCCTA-AGCTTCCACCAAACCTTCAATGCTTAGATGCACATGGATG 2681
| | ||||| || |||| | ||||||||||||| ||||| | ||| | | ||||| ||
Sbjct 2630 ATC-TTACACATGTTCC-ACAGCTTCCACCAAATCTTCAGTATTTAAACGTTCATGGTTG 2687
Query 2682 TAGCTCACTGAAAAGCATTGTGCAA--CCACTTGCACATGTT--ATGGCGACAGA-GCAT 2736
|||||||||||| | || | ||||| || || | | |||| || ||| || ||||
Sbjct 2688 TAGCTCACTGAAGA-CAGT-TGCAAAACCGCTGGTA--TGTTCTATACCGAT-GAAGCAT 2742
Query 2737 ATTCA-TTCCACTTTTATTTTCACGAAGTGCGACAAATTGGAACAAGCTGCAAAGGAGGA 2795
| || |||| | || |||||||| || ||| | |||||||||||||||||||||||||
Sbjct 2743 GT-CAATTCCTCGTTCATTTTCACTAACTGCAATGAATTGGAACAAGCTGCAAAGGAGGA 2801
Query 2796 AATT-TCAAGCTAT-T-CTCAAAGGAAATGTCAGATACTACCAAGTGCACTTAAACTCTG 2852
|||| | | | ||| | || ||||||| ||||| | || | ||||| ||||||| ||
Sbjct 2802 AATTGT-A-G-TATATGCTGAAAGGAAGTGTCATTTGCTTGCTAGTGCGCTTAAACGATG 2858
Query 2853 CAATAAG-GATCTTGTTCCTGAGATTTTGTTCAGCACCT-GCTTTCCTGGAGGTGAAATA 2910
| || || | | | |||||||||||||||||| |||| | ||||||||||| |||||||
Sbjct 2859 CGATGAGAGTTGT-GTTCCTGAGATTTTGTTCTGCAC-TAGCTTTCCTGGATGTGAAATG 2916
Query 2911 CCTCCATGGTTTTA-TCACCAAGCAATTGGATCTAAGGTAAAGTTTGAATCGCC-CCAAC 2968
||| |||||||| | |||| | ||||||||||||| ||| ||||||||| || || |
Sbjct 2917 CCTTCATGGTTT-AGTCACGATGCAATTGGATCTATGGTGGAGTTTGAATTACCTCCT-C 2974
Query 2969 ATTGGAAGT-ACAATAAGCTCTCTGGGATAGCCTTTTGTGCTGTTGTCTCATTCCAA-AA 3026
| ||||| | |||||| ||| |||||||||||| | |||| ||||||||||||| || ||
Sbjct 2975 ACTGGAA-TCACAATAGGCTTTCTGGGATAGCCCTATGTGTTGTTGTCTCATTC-AAGAA 3032
Query 3027 CTGT 3030
||||
Sbjct 3033 CTGT 3036
> AT5G45250.1 | Symbols: RPS4 | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:18321914-18326022 REVERSE LENGTH=3654
Length=3654
Score = 518 bits (280), Expect = 2e-145
Identities = 912/1208 (75%), Gaps = 80/1208 (7%)
Strand=Plus/Plus
Query 1849 CGATGTCTCCACTGGCTGAAATTCCCACTGAAAGA-AGTTCC-ACCAGATTTCGACCCAA 1906
||||| ||||||||||||||||||||| || ||| | |||| | | |||||| ||||||
Sbjct 1852 CGATGCCTCCACTGGCTGAAATTCCCATTG-GAGACACTTCCAAAC-GATTTCAACCCAA 1909
Query 1907 AGAATCTTGTGGACCTTAAGCTTCATTACAGCGAGATTGAACGAGTTTGGGAGGGTAATA 1966
|||||||| ||||||||||| | ||||| || || |||| | ||||||||||| | |
Sbjct 1910 TTAATCTTGTCGACCTTAAGCTGCCCTACAGTGAAATGGAACAACTTTGGGAGGGTGACA 1969
Query 1967 AGGATGCATCGAAACTTAA-ATGGATAGACT-TCAACCACTCAAGAAAGTTGTGTACCTT 2024
|||| || | | ||||| ||| | || | |||| |||||||| |||||||| | |||
Sbjct 1970 AGGACACA-CCATGCTTAAGGTGGGTCGA-TCTCAATCACTCAAGTAAGTTGTGCAGCTT 2027
Query 2025 GTCAGGATTAGCCGAGGCTCG-AAATCTTC-AAGAATTGAACCTTGAAGGCTGCATAGCA 2082
|||||| ||| | | ||| | ||| |||| ||| |||||||||||||| |||| | ||
Sbjct 2028 GTCAGGGTTATCAAAAGCT-GAAAAGCTTCAAAG-GTTGAACCTTGAAGGTTGCACAACA 2085
Query 2083 TTGGCCA-CATTGCCCCAGGATATGGAAAATATG-AAGTGTCTTGTTTTCTTGAACCT-C 2139
| | | | || || || |||||| |||| ||| || || |||| ||||||||| ||
Sbjct 2086 CT-GAAAGCGTTTCCACATGATATGAAAAAAATGAAAATG-CTTGCTTTCTTGAATCTGA 2143
Query 2140 AGAGGCTGCACAAGTCTC-AAGTATCTTCCAGAGATTAACTTGATATCTCTGGAAACTCT 2198
|| || || ||||||||| || | |||||||||||| || ||||| |||||| |||| ||
Sbjct 2144 AG-GGGTGTACAAGTCTCGAA-TCTCTTCCAGAGATGAATTTGATTTCTCTGAAAACACT 2201
Query 2199 CATC-CTCAGCGACTGTTCAAAATTTAAGGTATTTAAGGTGATTTCAGAAAAGCTAGAAG 2257
| | ||||||| ||| |||| ||||||| |||| | |||||||||| || |||||
Sbjct 2202 TA-CTCTCAGCGGCTGCTCAACTTTTAAGGAATTTCCGTTGATTTCAGATAATATAGAAA 2260
Query 2258 CAATATACTTGGATGGCACTGCGATAAAG-GAACTTCCTTCTG-ACATTCG-GAATCTCC 2314
| ||||||| |||||||| || || ||| | ||||| | || ||| | | ||| || |
Sbjct 2261 CTCTATACTTAGATGGCACAGCAAT-AAGTCAGCTTCC-TATGAACA-TGGAGAAGCTTC 2317
Query 2315 AAAGACTTGTCT-TATTAAACATGAAAGGCTGCAAGAA-GCT-GA-AAACACTTCCTGAC 2370
| |||||||| | |||| || ||||||| |||||| || ||| || || | |||| | |
Sbjct 2318 AGAGACTTGT-TGTATTGAATATGAAAGACTGCAA-AATGCTAGAGGAA-A-TTCCAGGC 2373
Query 2371 AGTCTTGGCGAACTAAAAGCTCTTCAAGAACTGATACTCTCTGGCTGTTCAAAGCTCAAA 2430
|| |||| || || |||||||||||||||||||||||||||| |||| ||| |||||
Sbjct 2374 CGTGTTGGTGAGCTGAAAGCTCTTCAAGAACTGATACTCTCTGATTGTTTAAATCTCAAG 2433
Query 2431 AGTTTTCC-AGAAGTTGCGAAAAACATGAACCGTCTAGAGATTTTACTTCTAGATGAAAC 2489
| |||||| |||| | ||| ||| | | | || | ||||||||| | |||| ||
Sbjct 2434 A-TTTTCCCAGAAAT--CGA----CATTAGCTTTTTAAACATTTTACTTTTGGATGGGAC 2486
Query 2490 AGCTATCAAAGAAATGCCA-AATATATTCTCTCTGCGGTACTTATGCCTAAGTAGAAATG 2548
||| || ||| |||||| ||| || ||| ||| ||| || ||| |||| |||||||
Sbjct 2487 AGCCATTGAAGTGATGCCACAAT-TACCCTCAGTGCAGTATTTGTGCTTAAGCAGAAATG 2545
Query 2549 AAAAGAT-ATGCCGCCTCCCAGA-GAACATCAGCCAATTTTCTCGACTGAAATGGCTTGA 2606
||||| | || |||| || | | | ||||| || |||||| ||| |||||||| ||
Sbjct 2546 CTAAGATCA-GCTGCCTTCCTGTTGGA-ATCAGTCAGCTTTCTCAACTTAAATGGCTGGA 2603
Query 2607 TATGAAGTACTGTAAAAGCCTTACAT-ATCTTCCTA-AGCTTCCACCAAACCTTCAATGC 2664
||||||| |||| || ||||||| | |||| | || |||||||||| ||||| |||
Sbjct 2604 CCTGAAGTATTGTACGAGTCTTACATCAG-TTCC-AGAGTTTCCACCAAATCTTCAGTGC 2661
Query 2665 TTAGATGCACATGGATGTAGCTCACTGAAAAGCA-TTGTGCAAC-CACTT-G-CACATGT 2720
||||||||||| || ||||| || ||||| | || || | ||| | ||| | | | | |
Sbjct 2662 TTAGATGCACACGGCTGTAGTTCGCTGAAGA-CAGTT-T-CAAAGC-CTTTGGCCCGTAT 2717
Query 2721 TATGGCGACAGAGCATATTCATTCCACTTTTATTTTCACGAAGTGCGACAAATTGGAACA 2780
||| | || || || | ||||||||| || |||||||| || || || || |||||||
Sbjct 2718 CATGCCAACTGAACAGAATCATTCCACATTCATTTTCACCAACTGTGAGAACCTGGAACA 2777
Query 2781 AGCTGCAAAGGAGGAAATTTCAA-GCTATTCTCAAAGGAAATGTCAGATACTACCA-AGT 2838
|||||||||||||||||| || | ||| ||||||||||||| ||| | || || | |
Sbjct 2778 AGCTGCAAAGGAGGAAATCACATCG-TATGCTCAAAGGAAATGCCAGCTGTTATCATA-T 2835
Query 2839 GCACTTAAACTCTGCAATAAGGATCTTGTTCCTGAGAT-TTTGTTCAGCACCTGCTTTCC 2897
|| | |||| || |||| || ||||||| | || || |||||||||||| ||||||||
Sbjct 2836 GCTCGGAAACGCTACAATGGGGGTCTTGTTTCAGA-ATCTTTGTTCAGCACTTGCTTTCC 2894
Query 2898 TGGAGGTGAAATACCTCCATGGTTTTATCACCAAGCAATTGGATCTAAGGTA-AAGTTTG 2956
|||| ||||| | ||| | ||||||| ||| || || |||||||| || || ||||
Sbjct 2895 TGGATGTGAAGTGCCTTCTTGGTTTTGTCATGAAACAGTTGGATCTGAGTTAGAAGTAA- 2953
Query 2957 AA-TCGC-CCCAACATTGGAA-GTACAATAAGCTCT-CTGGGATAGC-CTTTTGTGCTGT 3011
|| || | |||| |||||| | | |||| ||||| | | ||||| || || | |||||||
Sbjct 2954 AACTC-CTCCCA-CATTGGCATG-ACAAGAAGCT-TGCCGGGATTGCTCTAT-GTGCTGT 3008
Query 3012 TGTCTCAT 3019
|||||||
Sbjct 3009 AGTCTCAT 3016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 174580961640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5