BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg893712

Length=1587
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G17950.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   270    2e-71


> AT5G17950.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:5944553-5944959 
REVERSE LENGTH=363
Length=363

 Score =  270 bits (146),  Expect = 2e-71
 Identities = 158/164 (96%), Gaps = 0/164 (0%)
 Strand=Plus/Plus

Query  1395  TGAAAATATAAGCTTTGGTGTGAACGTGAAAGACGCCATATTCTCGCTTTCGGAGAAGGA  1454
             |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| 
Sbjct  72    TGAAAATATAAGCTTTGGTGTGAACGTGAAAGACACAATATTCTCGCTTTCGGAGAAGGG  131

Query  1455  TTGGGACGTGGAGAAAGGGATACAAACCCTAGCTGATATGGGTCTCATCTCTATATCTAG  1514
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  132   CTGGGACGTGGAGAAAGGGATACAAACCCTAGCTGATATGGGTCTCATCTCTATATCTAG  191

Query  1515  GGAAAGAGGAATCAGCATGCACTGTTTGGTACGCTTAATGTCTA  1558
             |||||||||||||| |||||| ||||||||||||||||||||||
Sbjct  192   GGAAAGAGGAATCATCATGCATTGTTTGGTACGCTTAATGTCTA  235



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 78363050745


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5