BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893714
Length=2367
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17970.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 2375 0.0
> AT5G17970.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:5948999-5951619 REVERSE LENGTH=2343
Length=2343
Score = 2375 bits (1286), Expect = 0.0
Identities = 1995/2330 (86%), Gaps = 78/2330 (3%)
Strand=Plus/Plus
Query 58 CATGTCTTTCCGAGCTTTTGCGGAGCAGATGTGCGTAAG-AACTTTCTAAGCCATCTT-C 115
||||| || || ||||| ||||| | |||||| ||| || ||||||||||| ||| || |
Sbjct 49 CATGTGTTCCCTAGCTTCTGCGGGGAAGATGTACGT-AGAAACTTTCTAAGTCAT-TTAC 106
Query 116 AAAAGGAGCTACAACTTAGGGGAATCAATGCATTCAAAGATCATGGAATCAAGAGAAGTC 175
| |||||||| |||| || ||||| ||||||| |||||| |||||||||||||||||
Sbjct 107 ACAAGGAGCTGCAACATAATGGAATTGATGCATTTAAAGATGGTGGAATCAAGAGAAGTC 166
Query 176 GATCCATATGGCCTGAACTTAAACAAGCCATCTGGGAATCAAGGA-TTTCTATAGTCGTT 234
| |||||||||||||| ||||||||||| || |||||||||| || |||| || || |||
Sbjct 167 GTTCCATATGGCCTGAGCTTAAACAAGCTATATGGGAATCAAAGATTTTC-ATTGTTGTT 225
Query 235 CTCT-CAAGTAACTACGCTGGTTCAAGCTGGTGCTTGGATGAGTTGCTAGAGATCATGGA 293
|| | |||| |||||||||||||| |||||||||| || || ||| | |||||||||||
Sbjct 226 CTTTCCAAG-AACTACGCTGGTTCGTGCTGGTGCTTAGACGAATTGGTCGAGATCATGGA 284
Query 294 ATGCAGGGAAGCTG-TGGGACAAACATTGCTGACAG-TTTTCTATGAGGTGGATCCATCC 351
|||||||||| || ||||| | |||||| || | | |||||||||| |||||||||| |
Sbjct 285 GTGCAGGGAAGTTGTTGGGA-AGACATTGGTG-CCGATTTTCTATGATGTGGATCCAT-C 341
Query 352 GA-TGTTAGAAAACAGACAGGAGCTTTTGGGAAGGTC-TTTGAGAAAACTTGCT--TGGG 407
| ||| ||||||||||| |||| |||||| |||| | ||||| || | ||| | || |
Sbjct 342 TAGTGTAAGAAAACAGACTGGAGATTTTGGAAAGG-CTTTTGACAAGATTTG-TGATGTG 399
Query 408 AAGAACAGTTGAAGAGACGCAGAGATGGAAGCAAGCTTTAACAG-ATGTTGCTAATGTCT 466
||||||| ||||||| ||||||||||| ||||||||| || | |||||| |||| | |
Sbjct 400 -AGAACAGAGGAAGAGAGGCAGAGATGGAGGCAAGCTTTGAC-GAATGTTGGTAATAT-T 456
Query 467 -CTGGCTATTGCTCTGAAAAATGGGACAATGAAG-CATGTATGATTGAGAAA-ATCGTTG 523
| ||| | |||||| |||||||||||||| | || |||||||| ||| |||||||
Sbjct 457 GCCGGCGAGTGCTCTTCGAAATGGGACAATGACGCCA-AAATGATTGA-AAAGATCGTTG 514
Query 524 CGGATGTTTCGGAAGAGATGA-ATTGCTGCACTCCTTCAAAGGATTTCGACGATTTAGTT 582
| ||||||| |||||| | | ||||| |||| |||| | ||||||||| |||||| ||
Sbjct 515 CTTATGTTTCTGAAGAGCT-ATTTTGCTTCACTTCTTCGACGGATTTCGAAGATTTACTT 573
Query 583 GGATTGGAAGCTCATGTCGCGAAGTTGAATTCGCTGTTATGTCTACAGTCTAATGACGTG 642
||||||||||||||||| || || ||||| || ||||| ||||| |||||||||| |||
Sbjct 574 GGATTGGAAGCTCATGTTGCAAATTTGAAATCAATGTTAGGTCTAGAGTCTAATGAAGTG 633
Query 643 AGGATGATAGG-GATTTGGGGTCCTATTGGAATCGGTAAGACCACCATTGCCA-GAGCTT 700
| ||||||||| | ||||||||||| |||||| || |||||||| || | | || ||
Sbjct 634 AAGATGATAGGTG-TTTGGGGTCCTGCTGGAATAGGGAAGACCACTATCACGAGGA-TTT 691
Query 701 TATACAATCAACTTTC-T--TCTGATGGTGATGAATTTCAGCA-AAATC-TTTTCATGGA 755
|||||||||||||||| | ||| ||| ||| || ||||| | || ||||||||||
Sbjct 692 TATACAATCAACTTTCTTCATCTAATGATGACGACTTTCA--ATTGTTCATTTTCATGGA 749
Query 756 GAATGTTAAGAGAAGC-AGTAAGAGAAA-CAAACTTGATGGTTACAGAC-TGAAGCTGCA 812
|||||||||| ||||| | || |||||| ||| | |||||||| || | ||||| ||||
Sbjct 750 GAATGTTAAGGGAAGCTA-TAGGAGAAAGGAAA-TCGATGGTTATAG-CATGAAGTTGCA 806
Query 813 TTTACAAGAAAGATTTCTCTCTGAAATGT-TCAACCAAAGGAATATAAATATAAGCCATT 871
||||| |||||| |||||||||||||| | || |||||| || ||||| |||||||||
Sbjct 807 TTTACGAGAAAGGTTTCTCTCTGAAAT-TACCACCCAAAGAAAGATAAAGGTAAGCCATT 865
Query 872 TAGGTGTAGCACAAGAAAGGCTAAAGAATCAGAAAGCTCTTATTGTTCTTGATGATGTAG 931
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 866 TAGGTGTAGCACAAGAAAGGCTAAAGAATCAGAAAGCTCTTATTGTTCTTGATGATGTTG 925
Query 932 ATGATGTAGAACAACTACATGCCTTGGCAGATCAAACTCAATGGTTTGGTAATGGAACCA 991
|||| | |||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 926 ATGAACTGGAACAACTACGTGCCTTGGCAGATCAAACTCAATGGGTTGGTAATGGAACCA 985
Query 992 GGGTTATT-GTGATTACAGAAGATAAACAGCTTTTGAAAGCTCATGGGATTGA-TCATGT 1049
| || || || | ||||||||||| |||||||||||| |||||||||||| | ||||||
Sbjct 986 GAATT-TTAGTTACTACAGAAGATAGACAGCTTTTGAAGGCTCATGGGATT-ACTCATGT 1043
Query 1050 CTATGACGTGTG-TCT-TCCATCTAAAGATGAAGCCTTTCAA-ATCTTATGTCGATTTGC 1106
||||| ||| | | | |||||||| |||||||||||| || ||||| |||| || |||
Sbjct 1044 ATATGAAGTG-GAT-TATCCATCTAGAGATGAAGCCTTA-AAGATCTTGTGTCAATGTGC 1100
Query 1107 TTTTGGAAAAACCTCGGCCCCAGAAGGCTACTATGATGTAGCTGTTGAAGTTGCAAAACT 1166
||| ||||||| |||||| |||||||| ||| ||||| ||||||||||||||| ||||
Sbjct 1101 TTTCGGAAAAAACTCGGCACCAGAAGGATACAATGATCTAGCTGTTGAAGTTGTGGAACT 1160
Query 1167 TGCTGGAGATCTTCCCTTAGGTCTCAGCATTTTAGGTGCATCTTTGCGAGGGATGAGAAA 1226
||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1161 TGCAGGATATCTTCCTTTAGGTCTCAGCGTTTTAGGTGCATCTTTGCGAGGGATGAGTAA 1220
Query 1227 GGATGAGTGGATAAACGCGCTACCGAGGCTTAGAACCAGTCTAAATGGGAAAATCGAAAA 1286
| | |||||||||||||| |||||| | |||||||| ||| | ||||||||||| || ||
Sbjct 1221 GAAAGAGTGGATAAACGCTCTACCGCGACTTAGAACTAGTTTGAATGGGAAAATAGAGAA 1280
Query 1287 ACTATTAGGAGCATGCTATGATGGGTTAGATGAGAAAGATAAGGCTCTGTTTCTTCATAT 1346
|||| || ||| ||| ||||| |||||||||||||||||||||||| | |||||||||||
Sbjct 1281 ACTACTAAGAGTATGTTATGAAGGGTTAGATGAGAAAGATAAGGCTATCTTTCTTCATAT 1340
Query 1347 CGCGTGTTTGTTCAATGGCGAA-AAGGTTGATCGTGTGAAGGAATTGCTTGC-AATTAGT 1404
|||||| || ||||||||| || || ||||||||||||||| |||||||| || |||
Sbjct 1341 CGCGTGCTTATTCAATGGC-AAGAATGTTGATCGTGTGAAGCTGTTGCTTGCTAAG-AGT 1398
Query 1405 GCATTGGATGCAGAATTTGGACTTAAAGTCCTTAATGACAGATCTCTTATACATATATG- 1463
|||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||| |
Sbjct 1399 GCATTGGATGTAGAATTTGGACTTAAAGTTCTTGTTGACAGATCTCTTATACACATA-GA 1457
Query 1464 TGCTGATGGATATATAGTAATGCATTGTTTGTTACAACAAATGGGTAAAGAAATTATTCG 1523
|||||||||||||||||| |||||||||||| |||||||| ||||||||||||| | |||
Sbjct 1458 TGCTGATGGATATATAGTCATGCATTGTTTGCTACAACAATTGGGTAAAGAAATCACTCG 1517
Query 1524 AGGACAATGTCTCCACGACCCCGGGAAAGGTAAGTTTATAGTTGATGCTTTGGAGATTTC 1583
||||| |||||| |||| ||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1518 GGGACAGTGTCTCGACGAGCCCGGGAAACGTAAGTTTCTAGTTGATTCTTTGGAGATTTC 1577
Query 1584 AGATGTACTTGCAGATGAAACCGGTACAAAAACTGTTTTAGGAATATCATTAGATATGTC 1643
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1578 AGATGTTCTTGCAGATGAAACCGGTACAGAAACTGTTTTAGGAATATCATTAGATATGTC 1637
Query 1644 CGAAATCGATGGTCAAGTGTATATAAGTGAAAAAGCCTTTGAGAAAATGCCTAATCTCCA 1703
||||| || | |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1638 TGAAATTGAAGATCAAGTGTATGTAAGTGAAAAAGCCTTTGAGAAAATGCCTAATCTCCA 1697
Query 1704 ATTCTTGAGGCTATACAATAGTATTCCT-GATAAAGCAGCCGAGTT-TGACTTACCTCAC 1761
||||||| |||||||||| | | |||| ||| |||||| | |||| | |||||||||||
Sbjct 1698 ATTCTTGTGGCTATACAAGAAT-TTCCCAGATGAAGCAGTCAAGTTGT-ACTTACCTCAC 1755
Query 1762 GGCTTAGATTATCTACCACGTAAACTTAGATTACTACATTGGGATTCGTACCCTATAAAA 1821
|| || |||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 1756 GGTTTGGATTATCTACCACGTAAACTTAGATTACTACATTGGGATTCGTATCCGAAAAAA 1815
Query 1822 TGTATGCCCTCTAAGTTTCGTCCTGAATTTCTTGTCGAACTTACTATGCGAGATAGCAAG 1881
||| |||| ||||||||||| || ||||||||||| |||||||||||| |||||||||||
Sbjct 1816 TGTTTGCCTTCTAAGTTTCGACCCGAATTTCTTGTGGAACTTACTATGAGAGATAGCAAG 1875
Query 1882 CTCGAGAAACTTTGGGAAGGTATTCAGCCACTGACAAGTCTCAAGTATATGGATTTGAGC 1941
|| ||||| || |||||||||||||||||||||| ||| |||||| ||||||| ||||
Sbjct 1876 CTGGAGAAGCTCTGGGAAGGTATTCAGCCACTGAAAAGCCTCAAGCGTATGGATCTGAGT 1935
Query 1942 GCATCCACAAACATTGGAGATATTCCAAACCTCTCAAGAGCAAAAAATCTGGAGAAGTTG 2001
||||||||||| ||| ||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1936 GCATCCACAAAGATTAAAGATATTCCAAACCTATCAAGAGCAACAAATCTGGAGAAGTTG 1995
Query 2002 TATCTTAGGTTCTGCGAAAATTTGGTCACAGTTCCTTCTTCT-GCTTTACAAAATCTTAA 2060
||||||||||||||| |||||||||||| ||||||||| ||| | | |||| |||||| |
Sbjct 1996 TATCTTAGGTTCTGCAAAAATTTGGTCATAGTTCCTTCGTCTTG-TCTACAGAATCTTCA 2054
Query 2061 TAAGCTAAAAGTGTTGGACATGTCTTGTTGCATAAAACTGAAGACTCTTCCA-ACCAACA 2119
|||||| ||||| ||||||||||||||||||||||||||||||| ||| ||| || ||||
Sbjct 2055 TAAGCTCAAAGTCTTGGACATGTCTTGTTGCATAAAACTGAAGAGTCTGCCAGAC-AACA 2113
Query 2120 TCAACTTGGAATCCCTCAGTGTCCTTAATCTGAGAGGATGCTCGAAGCTGAAGAGGTTTC 2179
|||||||| |||||||||||||||||||| |||||||||||||||||||||| | ||||
Sbjct 2114 TCAACTTGAAATCCCTCAGTGTCCTTAATATGAGAGGATGCTCGAAGCTGAATAACTTTC 2173
Query 2180 CGTTT-ATTTCAACGCAGATTCAATTCATGTCTCTTGGGGAAACAGCGATAGAGAAAGTG 2238
| ||| ||||||||||||||||| ||||||||||| || ||||| |||||||||||||||
Sbjct 2174 C-TTTGATTTCAACGCAGATTCAGTTCATGTCTCTAGGCGAAACTGCGATAGAGAAAGTG 2232
Query 2239 CCTTC-GCAAATCAAGTTATGTTCTCGGCTTGTTTCATTGGAAATGGCGGGTTGTAAGAA 2297
||||| | || |||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 2233 CCTTCAGTAA-TCAAGTTATGTTCTCGGCTTGTCTCATTGGAGATGGCGGGATGTAAGAA 2291
Query 2298 CCTTAGAACAATACCACCTTTCCCTGCAAGTATAGAGATTGTGGAC-TAT 2346
||||| |||| ||||| ||| ||||||||||||||||| |||||| |||
Sbjct 2292 CCTTAAAACATTACCATATTTGCCTGCAAGTATAGAGATCGTGGACATAT 2341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117519475845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5