BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893724
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18065.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1050 0.0
AT5G18040.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 806 0.0
AT4G29760.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 595 2e-169
AT1G51670.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 69.4 5e-11
> AT5G18065.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G29760.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:5978678-5980376 FORWARD LENGTH=946
Length=946
Score = 1050 bits (568), Expect = 0.0
Identities = 761/851 (89%), Gaps = 25/851 (3%)
Strand=Plus/Plus
Query 1 ATGAATATGAATCAGCTATTCATGCAATCTATGGCAGAGACTCGTGGCCTCTGTCATCCG 60
||| |||||||||||||||||||||||||||| ||| | | |||||| |||||||||||
Sbjct 104 ATGGATATGAATCAGCTATTCATGCAATCTATTGCAAACAGTCGTGGACTCTGTCATCCA 163
Query 61 GATTGCGTAAAAGCAAGTAATGAGCAAGAAGATTACGATGCATCTCAACATGCAGCTATG 120
||||||| |||||||| |||||||| |||||||| ||||| ||||||||||| ||||||
Sbjct 164 GATTGCGAAAAAGCAAATAATGAGCGTGAAGATTATGATGCGTCTCAACATGCCGCTATG 223
Query 121 GTAGCAGTGAATCTGATTAGCTCTGCACGGGTTATCCTCAACCTTGACGCTGTGAGGT-C 179
||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| | |
Sbjct 224 GTAGCGGTGAATCTGATTAGCTCTGCACGGGTTATCCTCAAGCTTGATGCTGTG-TATAC 282
Query 180 TGAGTACTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAAT 239
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 283 TGAGTACTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACAACCAGGGAGAAAT 342
Query 240 GGATCAACAAAGCTCTCAGCTCACTTTCGAAAACATCCTTCAGTATATGG-TGGAAAACG 298
||||||||||||||||||||||||| || ||||| | ||||||||||||| || |||| |
Sbjct 343 GGATCAACAAAGCTCTCAGCTCACTCTCCAAAACTTGCTTCAGTATATGGATG-AAAATG 401
Query 299 TCTGGAACAAGAGGGAAGATGTGCAGGGAGAAAGGGAGCAAC-ATCTCACCGTCAAAGAC 357
||||||| |||| ||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct 402 TCTGGAATAAGAAGGAAGATGTGCAGGGAGAAAGGGAGCAACCA-CTCACTGTCAAAGAC 460
Query 358 TGCCTTGAATGTGCTTTCAAG-AATGGGCTACCGAGAAGAGAACATTGGTCACATGTGGG 416
||||||||||||||||||||| || |||||||||||||| || || ||| ||||||||||
Sbjct 461 TGCCTTGAATGTGCTTTCAAGTAA-GGGCTACCGAGAAGTGAGCAGTGGGCACATGTGGG 519
Query 417 ATGTACGTTCAAGGCTCCACCATTTACTTGTCACATTCCTCGCGTCCCCATGAAAGGAGA 476
|||| |||||||||||||||||||| | ||||| ||||||||||| ||||||||||||||
Sbjct 520 ATGTCCGTTCAAGGCTCCACCATTTGCCTGTCAGATTCCTCGCGTGCCCATGAAAGGAGA 579
Query 477 AGTGATTGAGACTAAGAGTGTGGATGAAGCAATGAAGCTGTTGATGAAACAACCGGTGGG 536
||||||||||||||||||| |||||||||| | ||||||||||| ||||||||||||||
Sbjct 580 AGTGATTGAGACTAAGAGTTTGGATGAAGCGTTTAAGCTGTTGATTAAACAACCGGTGGG 639
Query 537 AGCAAGACTCCATTTATTCAGTCCAGAGATTGATCGTGTTGGAGAGGGGATTT-ACGATG 595
||||||||||||| | |||||||||||| ||||| |||||||||||| |||| |||| |
Sbjct 640 AGCAAGACTCCATGTCTTCAGTCCAGAGCTTGATAATGTTGGAGAGGG-ATTTTACGAGG 698
Query 596 GCCCGTC-A---AGTA-A-T--GGA-TCAAGCTATGTTGGACTTAGAGATGCCATGATAG 646
||| ||| | ||| | | ||| ||| |||||||||||||||| |||| || ||||
Sbjct 699 GCCTGTCTAGCCAGTCTAGTAAGGAATCACGCTATGTTGGACTTAGGGATGTAATCATAG 758
Query 647 TTGCAGTGGATAAGTCCGAGG-AAAAATTTGTTG-TGAAAGTGCAGATCTGTTACAAGAA 704
||||||||||||||||||||| ||||| | |||| | | ||| ||||||||||||||||
Sbjct 759 TTGCAGTGGATAAGTCCGAGGGAAAAACT-GTTGCT-ACTGTGAAGATCTGTTACAAGAA 816
Query 705 GAAGACATCATTTGTCAAAGTG-TGTATGAGGCGTATGTTTGTCCAGCTTGATGGTGATG 763
|||||| ||||||||||||||| | | |||| ||||||||||||||||||| ||||| ||
Sbjct 817 GAAGACTTCATTTGTCAAAGTGCT-TGTGAGCCGTATGTTTGTCCAGCTTGGTGGTGGTG 875
Query 764 AGGAGTCTCAGGTGAAAGAGCCAACAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTAT 823
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 876 AGGAGTCTCAGGTGAAAGAGCCAGCAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTAT 935
Query 824 CTGTCAACTAA 834
|||||||||||
Sbjct 936 CTGTCAACTAA 946
> AT5G18040.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G29760.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:5972419-5974156 FORWARD LENGTH=1076
Length=1076
Score = 806 bits (436), Expect = 0.0
Identities = 590/662 (89%), Gaps = 19/662 (3%)
Strand=Plus/Plus
Query 186 CTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAATGGATCA 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 240 CTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAATGGATGA 299
Query 246 ACAAAGCTCTCAGCTCACTTTCGAAAACATCCTTCAGTATATGGTGGAAAACGTCTGGAA 305
|| |||||||||| ||||| |||||||| | | |||||||||||||||||| ||||||||
Sbjct 300 ACCAAGCTCTCAGTTCACTATCGAAAACTTGCATCAGTATATGGTGGAAAATGTCTGGAA 359
Query 306 CAAGAGGGAAGATGTGCAGGGAGAAAGGGAGCAAC-ATCTCACCGTCAAAGACTGCCTTG 364
|||||| |||||||||||||||| ||||||||| | ||||| ||||||||||||||||
Sbjct 360 TAAGAGGTAAGATGTGCAGGGAGA--GGGAGCAACCA-CTCACTGTCAAAGACTGCCTTG 416
Query 365 AATGTGCTTTCAAGAATGGGCTACCGAGAAGAGAACATTGGTCACATGTGGGATGTACGT 424
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
Sbjct 417 AATGTGCTTTCAAGAAAGGGCTACCGAGAAGAGAACATTGGGCACATGTGGGATGTACAT 476
Query 425 TCAAGGCTCCACCATTTACTTGTCACATTCCTCGCGTCCCCATGAAAGGAGAAGTGATTG 484
|||||||||| |||||| |||||||||| || ||||| ||||||||||||||||||||||
Sbjct 477 TCAAGGCTCCCCCATTTGCTTGTCACATACCCCGCGTGCCCATGAAAGGAGAAGTGATTG 536
Query 485 AGACTAAGAGTGTGGATGAAGCAATGAAGCTGTTGATGAAACAACCGGTGGGAGCAAGAC 544
||||||||||| |||||||||| | ||||||||||| |||||||||||||| |||||||
Sbjct 537 AGACTAAGAGTTTGGATGAAGCGTTTAAGCTGTTGATTAAACAACCGGTGGGTGCAAGAC 596
Query 545 TCCATTTATTCAGTCCAGAGATTGATCGTGTTGGAGAGGG-GATTTACGATGGCCCGTCA 603
||||| | ||||||||||| ||||| |||||||||||| | ||||||| |||| |||
Sbjct 597 TCCATGTGTTCAGTCCAGACCTTGATAATGTTGGAGAGGGAG-TTTACGAGGGCCTGTCT 655
Query 604 AG--TAA-T-G---G-A-TCAAGCTATGTTGGACTTAGAGATGCCATGATAGTTGCAGTG 654
|| | | | | | ||| |||||||||||||||| |||| ||| ||||||||||||
Sbjct 656 AGCCTGTCTCGTAAGGAATCACGCTATGTTGGACTTAGGGATGTCATCATAGTTGCAGTG 715
Query 655 GATAAGTCCGAGG-AAAAATTTGTTG-TGAAAGTGCAGATCTGTTACAAGAAGAAGACAT 712
|||||||||||| ||||| | |||| | | ||| |||| ||||||||||||||||| |
Sbjct 716 AATAAGTCCGAGGGAAAAACT-GTTGCT-ACTGTGAAGATATGTTACAAGAAGAAGACTT 773
Query 713 CATTTGTCAAAGTGTGTATGAGGCGTATGTTTGTCCAGCTTGATGGTGATGAGGAGTCTC 772
||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||
Sbjct 774 CATTTGTCAAAGTGTGTTTGAGCCGTATGTTTGTCCAGCTTGGTGGTGGCGAGGAGTCTC 833
Query 773 AGGTGAAAGAGCCAACAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACT 832
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 834 AGGTGAAAGAGCCAACAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTATCAACT 893
Query 833 AA 834
||
Sbjct 894 AA 895
> AT4G29760.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G29770.2);
Has 63 Blast hits to 63 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14574114-14575148
FORWARD LENGTH=843
Length=843
Score = 595 bits (322), Expect = 2e-169
Identities = 681/846 (80%), Gaps = 57/846 (7%)
Strand=Plus/Plus
Query 25 CAATCTATGGCAGAGACTCG-TGGCCTCTGTCATCCGGATTGCGTAAAAGCAAGTAATGA 83
||||||||| || || | | ||||| |||||||| |||||||||||||||||| ||||
Sbjct 19 CAATCTATGTCA-AGGGTGGCTGGCCGATGTCATCCAGATTGCGTAAAAGCAAGTGATGA 77
Query 84 GCAAGAAGATTACGATGCATCTCAACATGCAGCTATGGTAGCAGTGAATCTGATTAGCTC 143
||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||||
Sbjct 78 GCAAGAAGATTACCATGCATCTCAAAATGCAGCTTTGGTAGCTGTGAATCTGATTAGCTC 137
Query 144 TGCACGGGTT-ATCCTCAACCTTGACGCTGTGAG-GT-CTGAGTACTCAGCTCAGTATTT 200
|||| |||| || || || || ||||| |||| | |||||||||||||||||| |||
Sbjct 138 TGCA-AGGTTAATACTGAAACTCGACGC--TGAGTTTACTGAGTACTCAGCTCAGTTTTT 194
Query 201 GGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAATGGATCAACAAAGCTCTCAGCT 260
| |||| |||||||| ||||||||||||| ||||||| ||||||||||| || |||| |
Sbjct 195 GATGGACAATGCTGGAAAGGAAGACGACCCGGGAGAAGTGGATCAACAACGCAATCAGGT 254
Query 261 CACTTTCGAAAACAT-CCTTCAG-TA-TATGGTGGAAAACGTCTGGAACAAGAGGGAAGA 317
||| ||||||| | ||||| | || | ||| |||||||| |||| ||||| |||| |
Sbjct 255 CACGACCGAAAAC-TGCCTTC-GCTACT-TGGCCGAAAACGTTTGGACCAAGAAGGAAAA 311
Query 318 TGTGCAGGGAGAAAGGGAGCAAC-A-------T-CTCACCGTCAAAGACTGCCTT-GAA- 366
|| |||||||| || ||| |||| | | ||||| ||||||||||| ||| |||
Sbjct 312 TGGGCAGGGAGGAATGGATCAACAACGCCCTGTGCTCACTGTCAAAGACTG-CTTGGAAC 370
Query 367 TGTGCTTTCAAGAATGGGCTACCGAGAAGAGAACATTGGTCACATGTGGGATGTACGTTC 426
| |||||| || || ||||| |||||||||||||| ||| ||||| |||||||||| |||
Sbjct 371 T-TGCTTTTAAAAAAGGGCTGCCGAGAAGAGAACACTGGGCACATTTGGGATGTACCTTC 429
Query 427 AAGGCTCCACCATTTACTTGTCACATTCCTCGCGTCCCCATGAAAGGAGAAGTGATTGAG 486
|||||||| |||||| ||||||| || |||||||| || |||||||||||||| |||||
Sbjct 430 AAGGCTCCCCCATTTGCTTGTCAGATACCTCGCGTTCCTGTGAAAGGAGAAGTGGTTGAG 489
Query 487 ACTAAGAGTGTGGATGAAGCAATGAAGCTGTTGATGAAACAACCGGTGGGAGCAAGACTC 546
||||| | | ||||||||| | ||||||||| || | ||||| | ||||||| |||
Sbjct 490 GTTAAGACTTTTGATGAAGCATTCAAGCTGTTGGTGCATCAACCCATTGGAGCAAAACTG 549
Query 547 CATTTATTCAGTCCAG-AGATTGATCGTGTTGGAGAGGGGA-TTTACGATGG-C-C-CGT 601
||||| |||||||| | |||||||| ||||||||| |||| ||||| | || | | ||
Sbjct 550 CATTTGTTCAGTCC-GCAGATTGATAATGTTGGAGA-GGGAGTTTACAAAGGCCTCACGA 607
Query 602 CAAGTAATGGATCA-AGCTATGTTGGACTTAGAGATGC-CATGATAG-TTGCAGTGGATA 658
|| |||||| | || | |||||||||||||||||||| | | |||| || |||||||
Sbjct 608 CAGGTAATGAAACACA-CTATGTTGGACTTAGAGATGTGC-TAATAGCTT-CAGTGGAGG 664
Query 659 AGTCCGAGGAAAAATT-TGTTG-TGAAAGTGCAGATCTGTTACAAGAAGAAGACAT-CAT 715
||| ||||| | | || ||||| | | ||| ||||||| |||||||||||| | | |||
Sbjct 665 AGTTCGAGGGAGA-TTCTGTTGCT-ATTGTGAAGATCTGCTACAAGAAGAAG-CTTTCAT 721
Query 716 TTGTCAAAGTGTGTATGAGGCGT-ATGTTTGTC-CAG---CT--TGATGGTGATGAGGAG 768
|| ||||||||| | |||| ||| | |||| || ||| | |||||||||| | ||
Sbjct 722 TTATCAAAGTGTCTTTGAG-CGTTAGGTTTCTCTCAGTAGCACATGATGGTGAT-A--AG 777
Query 769 TCTCAGGTGAAAGAGCCAACAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTC 828
||| || | | || |||||||||||||||||||||||||||| |||| ||||||||| ||
Sbjct 778 TCTAAGTTCATAGCGCCAACAGGTCTGCTTGTTGACTTCTGTGTCCCGCGCTTATCTATC 837
Query 829 AACTAA 834
||||||
Sbjct 838 AACTAA 843
> AT1G51670.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G48180.1);
Has 37 Blast hits to 37 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19156504-19158749
FORWARD LENGTH=960
Length=960
Score = 69.4 bits (37), Expect = 5e-11
Identities = 97/125 (78%), Gaps = 8/125 (6%)
Strand=Plus/Plus
Query 95 ACGATGCATCT-CAACATGCAGCTATGGTAGCAG-TGAATCTGATTAGCTCTGCACGGGT 152
|||||| |||| | | ||| ||||| ||||| | || | ||||| |||||||||||| |
Sbjct 104 ACGATGAATCTGCTTC-TGCTGCTATCGTAGCGGTTG-AGCTGATAAGCTCTGCACGGCT 161
Query 153 TATC-CTCAACCTTGA-CGCTGTGAGGTCTGAGTACTCAGCTCAGTATTTGGTGGATAAT 210
| | || || || || | ||| | |||||||||||||||||||||||||||| ||
Sbjct 162 T-GCACTTAAGCTGGATAG-TGTCCGCACTGAGTACTCAGCTCAGTATTTGGTGGACAAA 219
Query 211 GCTGG 215
|||||
Sbjct 220 GCTGG 224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639424923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5