BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893725
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18040.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 579 2e-164
AT5G18065.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 577 6e-164
AT4G29770.2 | Symbols: | Target of trans acting-siR480/255. | ... 383 1e-105
AT4G29760.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 366 1e-100
AT1G51670.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 69.4 5e-11
> AT5G18040.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G29760.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:5972419-5974156 FORWARD LENGTH=1076
Length=1076
Score = 579 bits (313), Expect = 2e-164
Identities = 418/467 (90%), Gaps = 13/467 (3%)
Strand=Plus/Plus
Query 319 AAAGGGCTACCGAGAAGAGAACATTGGGCACATGTGGGATGTACGTTCAAGGCTCCACCA 378
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 431 AAAGGGCTACCGAGAAGAGAACATTGGGCACATGTGGGATGTACATTCAAGGCTCCCCCA 490
Query 379 TTTGCTTGTCACATTCCTCGCGTGCCTATGAAAGGAGAAGTGATTGAGACTAAGAGTTTG 438
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 491 TTTGCTTGTCACATACCCCGCGTGCCCATGAAAGGAGAAGTGATTGAGACTAAGAGTTTG 550
Query 439 GATGAAGCATTGAAGCTGTTGAAGCAACAACCGGTGGGAGCAAGACTCCATTTATTCAGT 498
|||||||| || |||||||||| ||||||||||||| |||||||||||| | ||||||
Sbjct 551 GATGAAGCGTTTAAGCTGTTGATTAAACAACCGGTGGGTGCAAGACTCCATGTGTTCAGT 610
Query 499 CCAGAGATTGATCGTGTTGGAGAGGGGA-TTTACGATGGCCCGTC-A---AG---C--AA 548
||||| ||||| ||||||||| |||| ||||||| |||| ||| | | | ||
Sbjct 611 CCAGACCTTGATAATGTTGGAGA-GGGAGTTTACGAGGGCCTGTCTAGCCTGTCTCGTAA 669
Query 549 TGG-ATCAAGCTATGTTGGACTTAGAGATGCCATCATAGTTGCAGTGGATAAGTCTGAGG 607
|| |||| |||||||||||||||| |||| |||||||||||||||| ||||||| ||||
Sbjct 670 -GGAATCACGCTATGTTGGACTTAGGGATGTCATCATAGTTGCAGTGAATAAGTCCGAGG 728
Query 608 GAAAGTTTGTTGCGACGGTGAAGATCTGTTACAAGAAGAAGACTTCATTTGTCAAAGTGT 667
|||| |||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 729 GAAAAACTGTTGCTACTGTGAAGATATGTTACAAGAAGAAGACTTCATTTGTCAAAGTGT 788
Query 668 GTATGAGGCGTATGTTTGTCCAGCTTGATGGTGACGAGGAGTCTCAGGTGAAAGAGCCAA 727
|| |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 789 GTTTGAGCCGTATGTTTGTCCAGCTTGGTGGTGGCGAGGAGTCTCAGGTGAAAGAGCCAA 848
Query 728 CAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACTAA 774
|||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 849 CAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTATCAACTAA 895
Score = 163 bits (88), Expect = 2e-39
Identities = 118/133 (89%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 186 CTCAGCTCAGTATTTGGTGGATAACGCTGGGAAGGAAGACGACCAGGGAGAAATGGATCA 245
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 240 CTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAATGGATGA 299
Query 246 ACAAAGCTCGCAGCTCACTATCGAAAACCTCCTTCAGTATATGGAGGCGAACGTTTGGAA 305
|| |||||| ||| |||||||||||||| | | ||||||||||| || || || |||||
Sbjct 300 ACCAAGCTCTCAGTTCACTATCGAAAACTTGCATCAGTATATGGTGGAAAATGTCTGGAA 359
Query 306 CAAGAGGGAAGAT 318
|||||| |||||
Sbjct 360 TAAGAGGTAAGAT 372
Score = 159 bits (86), Expect = 3e-38
Identities = 100/107 (93%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 1 ATGGATATGAATCAGCTATTCATGCAATCTATGGCAAAGACTCGTGGCCTCTGTCACCCA 60
||| |||||| ||||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 137 ATGAATATGATTCAGCGATTCATGCAATCTATGGCAAAGACGCGTGGCCTCTGTCATCCA 196
Query 61 GATTGCGAAAAAGCAAGTAGTGAGCAAGAAGATTACGATGCATCTCA 107
||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 197 GATTGCGTAAAAGCAAGTAGTGAGCAAGAAGATTACGATGCGTCTCA 243
> AT5G18065.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G29760.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:5978678-5980376 FORWARD LENGTH=946
Length=946
Score = 577 bits (312), Expect = 6e-164
Identities = 417/466 (89%), Gaps = 13/466 (3%)
Strand=Plus/Plus
Query 320 AAGGGCTACCGAGAAGAGAACATTGGGCACATGTGGGATGTACGTTCAAGGCTCCACCAT 379
|||||||||||||||| || || |||||||||||||||||| ||||||||||||||||||
Sbjct 483 AAGGGCTACCGAGAAGTGAGCAGTGGGCACATGTGGGATGTCCGTTCAAGGCTCCACCAT 542
Query 380 TTGCTTGTCACATTCCTCGCGTGCCTATGAAAGGAGAAGTGATTGAGACTAAGAGTTTGG 439
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 543 TTGCCTGTCAGATTCCTCGCGTGCCCATGAAAGGAGAAGTGATTGAGACTAAGAGTTTGG 602
Query 440 ATGAAGCATTGAAGCTGTTGAAGCAACAACCGGTGGGAGCAAGACTCCATTTATTCAGTC 499
||||||| || |||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 603 ATGAAGCGTTTAAGCTGTTGATTAAACAACCGGTGGGAGCAAGACTCCATGTCTTCAGTC 662
Query 500 CAGAGATTGATCGTGTTGGAGAGGGGA-TTTACGATGGCCCGTC-A---AG-C-A--ATG 550
||||| ||||| ||||||||| |||| ||||||| |||| ||| | || | | | |
Sbjct 663 CAGAGCTTGATAATGTTGGAGA-GGGATTTTACGAGGGCCTGTCTAGCCAGTCTAGTAAG 721
Query 551 G-ATCAAGCTATGTTGGACTTAGAGATGCCATCATAGTTGCAGTGGATAAGTCTGAGGGA 609
| |||| |||||||||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 722 GAATCACGCTATGTTGGACTTAGGGATGTAATCATAGTTGCAGTGGATAAGTCCGAGGGA 781
Query 610 AAGTTTGTTGCGACGGTGAAGATCTGTTACAAGAAGAAGACTTCATTTGTCAAAGTG-TG 668
|| |||||| || |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 782 AAAACTGTTGCTACTGTGAAGATCTGTTACAAGAAGAAGACTTCATTTGTCAAAGTGCT- 840
Query 669 TATGAGGCGTATGTTTGTCCAGCTTGATGGTGACGAGGAGTCTCAGGTGAAAGAGCCAAC 728
| |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| |
Sbjct 841 TGTGAGCCGTATGTTTGTCCAGCTTGGTGGTGGTGAGGAGTCTCAGGTGAAAGAGCCAGC 900
Query 729 AGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACTAA 774
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACTAA 946
Score = 416 bits (225), Expect = 1e-115
Identities = 288/319 (90%), Gaps = 2/319 (1%)
Strand=Plus/Plus
Query 1 ATGGATATGAATCAGCTATTCATGCAATCTATGGCAAAGACTCGTGGCCTCTGTCACCCA 60
|||||||||||||||||||||||||||||||| ||||| | |||||| |||||||| |||
Sbjct 104 ATGGATATGAATCAGCTATTCATGCAATCTATTGCAAACAGTCGTGGACTCTGTCATCCA 163
Query 61 GATTGCGAAAAAGCAAGTAGTGAGCAAGAAGATTACGATGCATCTCAACATGCAGCTATG 120
|||||||||||||||| || ||||| |||||||| ||||| ||||||||||| ||||||
Sbjct 164 GATTGCGAAAAAGCAAATAATGAGCGTGAAGATTATGATGCGTCTCAACATGCCGCTATG 223
Query 121 GTAGCGGTGAATCTGATTAGCTCTGCACGGGTTATCTTCAAACTTGACT-CTGGGTATAC 179
|||||||||||||||||||||||||||||||||||| |||| ||||| | ||| ||||||
Sbjct 224 GTAGCGGTGAATCTGATTAGCTCTGCACGGGTTATCCTCAAGCTTGA-TGCTGTGTATAC 282
Query 180 TGAGTACTCAGCTCAGTATTTGGTGGATAACGCTGGGAAGGAAGACGACCAGGGAGAAAT 239
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 283 TGAGTACTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACAACCAGGGAGAAAT 342
Query 240 GGATCAACAAAGCTCGCAGCTCACTATCGAAAACCTCCTTCAGTATATGGAGGCGAACGT 299
||||||||||||||| ||||||||| || ||||| | |||||||||||||| | || ||
Sbjct 343 GGATCAACAAAGCTCTCAGCTCACTCTCCAAAACTTGCTTCAGTATATGGATGAAAATGT 402
Query 300 TTGGAACAAGAGGGAAGAT 318
||||| |||| |||||||
Sbjct 403 CTGGAATAAGAAGGAAGAT 421
> AT4G29770.2 | Symbols: | Target of trans acting-siR480/255.
| chr4:14575718-14577643 FORWARD LENGTH=1168
Length=1168
Score = 383 bits (207), Expect = 1e-105
Identities = 382/465 (82%), Gaps = 18/465 (4%)
Strand=Plus/Plus
Query 319 AAAGGGCTACCGAGAAGA-GAACATTGGGCACATGTGGGATGTACGTTCAAGGCTCCACC 377
|||||||| || |||| | | ||||||||| ||||||||||||| ||| || ||| ||
Sbjct 535 AAAGGGCTTCCAAGAA-ATGGACATTGGGCGCATGTGGGATGTATATTCCCGGTTCCTCC 593
Query 378 ATTTGCTTGTCACATTCCTCGCGTGCCTATGAAAGGAGAAGTGATTGAGACT--AAGAGT 435
|||||||||||| || |||||||| || ||||||||||||||||||||| || || | |
Sbjct 594 ATTTGCTTGTCAAATACCTCGCGTTCCCATGAAAGGAGAAGTGATTGAGGCTGCAA-A-T 651
Query 436 TTGGA-TGAAGCATTGAAGCT-GTTGAAGCAACAACCGGTGGGAGCAAGACTCCATTTAT 493
| || |||||| |||||||| | | | ||||||||| | || |||||| || ||||| |
Sbjct 652 GT-GAGTGAAGCGTTGAAGCTGGGT-ATGCAACAACCAGCGGCAGCAAGGCTGCATTTGT 709
Query 494 TCAGTCCAGAGATTGATCGTGTTGGAGAGGGGATTTACGATGGCCCGTCAAGCAATGGAT 553
||||||||||| |||||| |||||||||||| |||||||||||||||||| | |||| |
Sbjct 710 TCAGTCCAGAGTTTGATCTTGTTGGAGAGGGTATTTACGATGGCCCGTCAGGTAATGAAA 769
Query 554 CAAGCTATGTTGGACTTAGAGATG-CCATCATAGTTGCA-GTGGATAAG-TCTGAGGGA- 609
|| | ||||||||||||||||||| | |||| |||| | | ||| ||| || |||||
Sbjct 770 CACGATATGTTGGACTTAGAGATGTGC-TCATGGTTG-AGGCGGAGAAGATC-AAGGGAG 826
Query 610 AAGTTTGTTGCGACGGTGAAGATCTGTTACAAGAAGAAGACTTCATTTGTCAAAGTGTGT 669
|| |||| || ||| |||| || ||||||||||||||||||||||||||||||| |
Sbjct 827 AA-ACTGTTTTTACTGTGCAGATATGCTACAAGAAGAAGACTTCATTTGTCAAAGTGTCT 885
Query 670 ATGAGGCGTATGTTTGTCCAGCTTGATGGTGACGAGGAGTCTCAGGTGAAAGAGCCAACA 729
| ||| ||||| || ||| |||| |||||||||| ||||||||||| | ||||||| ||
Sbjct 886 ACGAGAAGTATGATTCTCCCGCTTAATGGTGACGACGAGTCTCAGGTCACAGAGCCAGCA 945
Query 730 GGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACTAA 774
|||| ||||||||||||||||||||||| || ||| ||||||||
Sbjct 946 TGTCTACTTGTTGACTTCTGTATCCCACGTTTTTCTATCAACTAA 990
> AT4G29760.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G29770.2);
Has 63 Blast hits to 63 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14574114-14575148
FORWARD LENGTH=843
Length=843
Score = 366 bits (198), Expect = 1e-100
Identities = 387/474 (82%), Gaps = 30/474 (6%)
Strand=Plus/Plus
Query 319 AAAGGGCTACCGAGAAGAGAACATTGGGCACATGTGGGATGTACGTTCAAGGCTCCACCA 378
|||||||| |||||||||||||| ||||||||| |||||||||| ||||||||||| |||
Sbjct 382 AAAGGGCTGCCGAGAAGAGAACACTGGGCACATTTGGGATGTACCTTCAAGGCTCCCCCA 441
Query 379 TTTGCTTGTCACATTCCTCGCGTGCCTATGAAAGGAGAAGTGATTGAGACTAAGAGTTTG 438
||||||||||| || |||||||| ||| |||||||||||||| ||||| ||||| |||
Sbjct 442 TTTGCTTGTCAGATACCTCGCGTTCCTGTGAAAGGAGAAGTGGTTGAGGTTAAGACTTTT 501
Query 439 GATGAAGCATTGAAGCTGTTGAAGCAACAACCGGTGGGAGCAAGACTCCATTTATTCAGT 498
||||||||||| ||||||||| ||| ||||| | ||||||| ||| ||||| ||||||
Sbjct 502 GATGAAGCATTCAAGCTGTTGGTGCATCAACCCATTGGAGCAAAACTGCATTTGTTCAGT 561
Query 499 CCAG-AGATTGATCGTGTTGGAGAGGGGA-TTTACGATGG-C-C-CGTCAAGCAATGGAT 553
|| | |||||||| ||||||||| |||| ||||| | || | | || || | |||| |
Sbjct 562 CC-GCAGATTGATAATGTTGGAGA-GGGAGTTTACAAAGGCCTCACGACAGGTAATGAAA 619
Query 554 CA-AGCTATGTTGGACTTAGAGATGC-CATCATAG-TTGCAGTGGATAAGT-CTGAGGGA 609
|| | |||||||||||||||||||| | | |||| || ||||||| ||| | ||||||
Sbjct 620 CACA-CTATGTTGGACTTAGAGATGTGC-TAATAGCTT-CAGTGGAGGAGTTC-GAGGGA 675
Query 610 AAGTT-TGTTGCGACGGTGAAGATCTGTTACAAGAAGAAGACTT-CATTTGTCAAAGTGT 667
| || |||||| | ||||||||||| |||||||||||| ||| ||||| |||||||||
Sbjct 676 GA-TTCTGTTGCTATTGTGAAGATCTGCTACAAGAAGAAG-CTTTCATTTATCAAAGTGT 733
Query 668 GTATGAGGCGT-ATGTTTGTC-CAG---CT--TGATGGTGACGAGGAGTCTCAGGTGAAA 720
| |||| ||| | |||| || ||| | ||||||||| | ||||| || | | |
Sbjct 734 CTTTGAG-CGTTAGGTTTCTCTCAGTAGCACATGATGGTGAT-A--AGTCTAAGTTCATA 789
Query 721 GAGCCAACAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACTAA 774
| |||||||||||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct 790 GCGCCAACAGGTCTGCTTGTTGACTTCTGTGTCCCGCGCTTATCTATCAACTAA 843
> AT1G51670.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G48180.1);
Has 37 Blast hits to 37 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19156504-19158749
FORWARD LENGTH=960
Length=960
Score = 69.4 bits (37), Expect = 5e-11
Identities = 99/127 (78%), Gaps = 12/127 (9%)
Strand=Plus/Plus
Query 95 ACGATGCATCT-CAACATGCAGCTATGGTAGCGG-TGAATCTGATTAGCTCTGCACGGGT 152
|||||| |||| | | ||| ||||| ||||||| || | ||||| |||||||||||| |
Sbjct 104 ACGATGAATCTGCTTC-TGCTGCTATCGTAGCGGTTG-AGCTGATAAGCTCTGCACGGCT 161
Query 153 T--ATCTTCAAACTTGACTCTGGGT--ATACTGAGTACTCAGCTCAGTATTTGGTGGATA 208
| | ||| || || || | | || ||||||||||||||||||||||||||||| |
Sbjct 162 TGCA-CTT-AAGCTGGA-T-AGTGTCCGCACTGAGTACTCAGCTCAGTATTTGGTGGACA 217
Query 209 ACGCTGG 215
| |||||
Sbjct 218 AAGCTGG 224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37625376103
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5