BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg893725 Length=774 Score E Sequences producing significant alignments: (Bits) Value AT5G18040.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 579 2e-164 AT5G18065.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 577 6e-164 AT4G29770.2 | Symbols: | Target of trans acting-siR480/255. | ... 383 1e-105 AT4G29760.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 366 1e-100 AT1G51670.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 69.4 5e-11 > AT5G18040.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29760.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5972419-5974156 FORWARD LENGTH=1076 Length=1076 Score = 579 bits (313), Expect = 2e-164 Identities = 418/467 (90%), Gaps = 13/467 (3%) Strand=Plus/Plus Query 319 AAAGGGCTACCGAGAAGAGAACATTGGGCACATGTGGGATGTACGTTCAAGGCTCCACCA 378 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 431 AAAGGGCTACCGAGAAGAGAACATTGGGCACATGTGGGATGTACATTCAAGGCTCCCCCA 490 Query 379 TTTGCTTGTCACATTCCTCGCGTGCCTATGAAAGGAGAAGTGATTGAGACTAAGAGTTTG 438 |||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| Sbjct 491 TTTGCTTGTCACATACCCCGCGTGCCCATGAAAGGAGAAGTGATTGAGACTAAGAGTTTG 550 Query 439 GATGAAGCATTGAAGCTGTTGAAGCAACAACCGGTGGGAGCAAGACTCCATTTATTCAGT 498 |||||||| || |||||||||| ||||||||||||| |||||||||||| | |||||| Sbjct 551 GATGAAGCGTTTAAGCTGTTGATTAAACAACCGGTGGGTGCAAGACTCCATGTGTTCAGT 610 Query 499 CCAGAGATTGATCGTGTTGGAGAGGGGA-TTTACGATGGCCCGTC-A---AG---C--AA 548 ||||| ||||| ||||||||| |||| ||||||| |||| ||| | | | || Sbjct 611 CCAGACCTTGATAATGTTGGAGA-GGGAGTTTACGAGGGCCTGTCTAGCCTGTCTCGTAA 669 Query 549 TGG-ATCAAGCTATGTTGGACTTAGAGATGCCATCATAGTTGCAGTGGATAAGTCTGAGG 607 || |||| |||||||||||||||| |||| |||||||||||||||| ||||||| |||| Sbjct 670 -GGAATCACGCTATGTTGGACTTAGGGATGTCATCATAGTTGCAGTGAATAAGTCCGAGG 728 Query 608 GAAAGTTTGTTGCGACGGTGAAGATCTGTTACAAGAAGAAGACTTCATTTGTCAAAGTGT 667 |||| |||||| || |||||||| |||||||||||||||||||||||||||||||||| Sbjct 729 GAAAAACTGTTGCTACTGTGAAGATATGTTACAAGAAGAAGACTTCATTTGTCAAAGTGT 788 Query 668 GTATGAGGCGTATGTTTGTCCAGCTTGATGGTGACGAGGAGTCTCAGGTGAAAGAGCCAA 727 || |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 789 GTTTGAGCCGTATGTTTGTCCAGCTTGGTGGTGGCGAGGAGTCTCAGGTGAAAGAGCCAA 848 Query 728 CAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACTAA 774 |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 849 CAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTATCAACTAA 895 Score = 163 bits (88), Expect = 2e-39 Identities = 118/133 (89%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 186 CTCAGCTCAGTATTTGGTGGATAACGCTGGGAAGGAAGACGACCAGGGAGAAATGGATCA 245 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 240 CTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAATGGATGA 299 Query 246 ACAAAGCTCGCAGCTCACTATCGAAAACCTCCTTCAGTATATGGAGGCGAACGTTTGGAA 305 || |||||| ||| |||||||||||||| | | ||||||||||| || || || ||||| Sbjct 300 ACCAAGCTCTCAGTTCACTATCGAAAACTTGCATCAGTATATGGTGGAAAATGTCTGGAA 359 Query 306 CAAGAGGGAAGAT 318 |||||| ||||| Sbjct 360 TAAGAGGTAAGAT 372 Score = 159 bits (86), Expect = 3e-38 Identities = 100/107 (93%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1 ATGGATATGAATCAGCTATTCATGCAATCTATGGCAAAGACTCGTGGCCTCTGTCACCCA 60 ||| |||||| ||||| |||||||||||||||||||||||| |||||||||||||| ||| Sbjct 137 ATGAATATGATTCAGCGATTCATGCAATCTATGGCAAAGACGCGTGGCCTCTGTCATCCA 196 Query 61 GATTGCGAAAAAGCAAGTAGTGAGCAAGAAGATTACGATGCATCTCA 107 ||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 197 GATTGCGTAAAAGCAAGTAGTGAGCAAGAAGATTACGATGCGTCTCA 243 > AT5G18065.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5978678-5980376 FORWARD LENGTH=946 Length=946 Score = 577 bits (312), Expect = 6e-164 Identities = 417/466 (89%), Gaps = 13/466 (3%) Strand=Plus/Plus Query 320 AAGGGCTACCGAGAAGAGAACATTGGGCACATGTGGGATGTACGTTCAAGGCTCCACCAT 379 |||||||||||||||| || || |||||||||||||||||| |||||||||||||||||| Sbjct 483 AAGGGCTACCGAGAAGTGAGCAGTGGGCACATGTGGGATGTCCGTTCAAGGCTCCACCAT 542 Query 380 TTGCTTGTCACATTCCTCGCGTGCCTATGAAAGGAGAAGTGATTGAGACTAAGAGTTTGG 439 |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 543 TTGCCTGTCAGATTCCTCGCGTGCCCATGAAAGGAGAAGTGATTGAGACTAAGAGTTTGG 602 Query 440 ATGAAGCATTGAAGCTGTTGAAGCAACAACCGGTGGGAGCAAGACTCCATTTATTCAGTC 499 ||||||| || |||||||||| |||||||||||||||||||||||||| | ||||||| Sbjct 603 ATGAAGCGTTTAAGCTGTTGATTAAACAACCGGTGGGAGCAAGACTCCATGTCTTCAGTC 662 Query 500 CAGAGATTGATCGTGTTGGAGAGGGGA-TTTACGATGGCCCGTC-A---AG-C-A--ATG 550 ||||| ||||| ||||||||| |||| ||||||| |||| ||| | || | | | | Sbjct 663 CAGAGCTTGATAATGTTGGAGA-GGGATTTTACGAGGGCCTGTCTAGCCAGTCTAGTAAG 721 Query 551 G-ATCAAGCTATGTTGGACTTAGAGATGCCATCATAGTTGCAGTGGATAAGTCTGAGGGA 609 | |||| |||||||||||||||| |||| ||||||||||||||||||||||| |||||| Sbjct 722 GAATCACGCTATGTTGGACTTAGGGATGTAATCATAGTTGCAGTGGATAAGTCCGAGGGA 781 Query 610 AAGTTTGTTGCGACGGTGAAGATCTGTTACAAGAAGAAGACTTCATTTGTCAAAGTG-TG 668 || |||||| || |||||||||||||||||||||||||||||||||||||||||| | Sbjct 782 AAAACTGTTGCTACTGTGAAGATCTGTTACAAGAAGAAGACTTCATTTGTCAAAGTGCT- 840 Query 669 TATGAGGCGTATGTTTGTCCAGCTTGATGGTGACGAGGAGTCTCAGGTGAAAGAGCCAAC 728 | |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| | Sbjct 841 TGTGAGCCGTATGTTTGTCCAGCTTGGTGGTGGTGAGGAGTCTCAGGTGAAAGAGCCAGC 900 Query 729 AGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACTAA 774 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 AGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACTAA 946 Score = 416 bits (225), Expect = 1e-115 Identities = 288/319 (90%), Gaps = 2/319 (1%) Strand=Plus/Plus Query 1 ATGGATATGAATCAGCTATTCATGCAATCTATGGCAAAGACTCGTGGCCTCTGTCACCCA 60 |||||||||||||||||||||||||||||||| ||||| | |||||| |||||||| ||| Sbjct 104 ATGGATATGAATCAGCTATTCATGCAATCTATTGCAAACAGTCGTGGACTCTGTCATCCA 163 Query 61 GATTGCGAAAAAGCAAGTAGTGAGCAAGAAGATTACGATGCATCTCAACATGCAGCTATG 120 |||||||||||||||| || ||||| |||||||| ||||| ||||||||||| |||||| Sbjct 164 GATTGCGAAAAAGCAAATAATGAGCGTGAAGATTATGATGCGTCTCAACATGCCGCTATG 223 Query 121 GTAGCGGTGAATCTGATTAGCTCTGCACGGGTTATCTTCAAACTTGACT-CTGGGTATAC 179 |||||||||||||||||||||||||||||||||||| |||| ||||| | ||| |||||| Sbjct 224 GTAGCGGTGAATCTGATTAGCTCTGCACGGGTTATCCTCAAGCTTGA-TGCTGTGTATAC 282 Query 180 TGAGTACTCAGCTCAGTATTTGGTGGATAACGCTGGGAAGGAAGACGACCAGGGAGAAAT 239 |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 283 TGAGTACTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACAACCAGGGAGAAAT 342 Query 240 GGATCAACAAAGCTCGCAGCTCACTATCGAAAACCTCCTTCAGTATATGGAGGCGAACGT 299 ||||||||||||||| ||||||||| || ||||| | |||||||||||||| | || || Sbjct 343 GGATCAACAAAGCTCTCAGCTCACTCTCCAAAACTTGCTTCAGTATATGGATGAAAATGT 402 Query 300 TTGGAACAAGAGGGAAGAT 318 ||||| |||| ||||||| Sbjct 403 CTGGAATAAGAAGGAAGAT 421 > AT4G29770.2 | Symbols: | Target of trans acting-siR480/255. | chr4:14575718-14577643 FORWARD LENGTH=1168 Length=1168 Score = 383 bits (207), Expect = 1e-105 Identities = 382/465 (82%), Gaps = 18/465 (4%) Strand=Plus/Plus Query 319 AAAGGGCTACCGAGAAGA-GAACATTGGGCACATGTGGGATGTACGTTCAAGGCTCCACC 377 |||||||| || |||| | | ||||||||| ||||||||||||| ||| || ||| || Sbjct 535 AAAGGGCTTCCAAGAA-ATGGACATTGGGCGCATGTGGGATGTATATTCCCGGTTCCTCC 593 Query 378 ATTTGCTTGTCACATTCCTCGCGTGCCTATGAAAGGAGAAGTGATTGAGACT--AAGAGT 435 |||||||||||| || |||||||| || ||||||||||||||||||||| || || | | Sbjct 594 ATTTGCTTGTCAAATACCTCGCGTTCCCATGAAAGGAGAAGTGATTGAGGCTGCAA-A-T 651 Query 436 TTGGA-TGAAGCATTGAAGCT-GTTGAAGCAACAACCGGTGGGAGCAAGACTCCATTTAT 493 | || |||||| |||||||| | | | ||||||||| | || |||||| || ||||| | Sbjct 652 GT-GAGTGAAGCGTTGAAGCTGGGT-ATGCAACAACCAGCGGCAGCAAGGCTGCATTTGT 709 Query 494 TCAGTCCAGAGATTGATCGTGTTGGAGAGGGGATTTACGATGGCCCGTCAAGCAATGGAT 553 ||||||||||| |||||| |||||||||||| |||||||||||||||||| | |||| | Sbjct 710 TCAGTCCAGAGTTTGATCTTGTTGGAGAGGGTATTTACGATGGCCCGTCAGGTAATGAAA 769 Query 554 CAAGCTATGTTGGACTTAGAGATG-CCATCATAGTTGCA-GTGGATAAG-TCTGAGGGA- 609 || | ||||||||||||||||||| | |||| |||| | | ||| ||| || ||||| Sbjct 770 CACGATATGTTGGACTTAGAGATGTGC-TCATGGTTG-AGGCGGAGAAGATC-AAGGGAG 826 Query 610 AAGTTTGTTGCGACGGTGAAGATCTGTTACAAGAAGAAGACTTCATTTGTCAAAGTGTGT 669 || |||| || ||| |||| || ||||||||||||||||||||||||||||||| | Sbjct 827 AA-ACTGTTTTTACTGTGCAGATATGCTACAAGAAGAAGACTTCATTTGTCAAAGTGTCT 885 Query 670 ATGAGGCGTATGTTTGTCCAGCTTGATGGTGACGAGGAGTCTCAGGTGAAAGAGCCAACA 729 | ||| ||||| || ||| |||| |||||||||| ||||||||||| | ||||||| || Sbjct 886 ACGAGAAGTATGATTCTCCCGCTTAATGGTGACGACGAGTCTCAGGTCACAGAGCCAGCA 945 Query 730 GGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACTAA 774 |||| ||||||||||||||||||||||| || ||| |||||||| Sbjct 946 TGTCTACTTGTTGACTTCTGTATCCCACGTTTTTCTATCAACTAA 990 > AT4G29760.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29770.2); Has 63 Blast hits to 63 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14574114-14575148 FORWARD LENGTH=843 Length=843 Score = 366 bits (198), Expect = 1e-100 Identities = 387/474 (82%), Gaps = 30/474 (6%) Strand=Plus/Plus Query 319 AAAGGGCTACCGAGAAGAGAACATTGGGCACATGTGGGATGTACGTTCAAGGCTCCACCA 378 |||||||| |||||||||||||| ||||||||| |||||||||| ||||||||||| ||| Sbjct 382 AAAGGGCTGCCGAGAAGAGAACACTGGGCACATTTGGGATGTACCTTCAAGGCTCCCCCA 441 Query 379 TTTGCTTGTCACATTCCTCGCGTGCCTATGAAAGGAGAAGTGATTGAGACTAAGAGTTTG 438 ||||||||||| || |||||||| ||| |||||||||||||| ||||| ||||| ||| Sbjct 442 TTTGCTTGTCAGATACCTCGCGTTCCTGTGAAAGGAGAAGTGGTTGAGGTTAAGACTTTT 501 Query 439 GATGAAGCATTGAAGCTGTTGAAGCAACAACCGGTGGGAGCAAGACTCCATTTATTCAGT 498 ||||||||||| ||||||||| ||| ||||| | ||||||| ||| ||||| |||||| Sbjct 502 GATGAAGCATTCAAGCTGTTGGTGCATCAACCCATTGGAGCAAAACTGCATTTGTTCAGT 561 Query 499 CCAG-AGATTGATCGTGTTGGAGAGGGGA-TTTACGATGG-C-C-CGTCAAGCAATGGAT 553 || | |||||||| ||||||||| |||| ||||| | || | | || || | |||| | Sbjct 562 CC-GCAGATTGATAATGTTGGAGA-GGGAGTTTACAAAGGCCTCACGACAGGTAATGAAA 619 Query 554 CA-AGCTATGTTGGACTTAGAGATGC-CATCATAG-TTGCAGTGGATAAGT-CTGAGGGA 609 || | |||||||||||||||||||| | | |||| || ||||||| ||| | |||||| Sbjct 620 CACA-CTATGTTGGACTTAGAGATGTGC-TAATAGCTT-CAGTGGAGGAGTTC-GAGGGA 675 Query 610 AAGTT-TGTTGCGACGGTGAAGATCTGTTACAAGAAGAAGACTT-CATTTGTCAAAGTGT 667 | || |||||| | ||||||||||| |||||||||||| ||| ||||| ||||||||| Sbjct 676 GA-TTCTGTTGCTATTGTGAAGATCTGCTACAAGAAGAAG-CTTTCATTTATCAAAGTGT 733 Query 668 GTATGAGGCGT-ATGTTTGTC-CAG---CT--TGATGGTGACGAGGAGTCTCAGGTGAAA 720 | |||| ||| | |||| || ||| | ||||||||| | ||||| || | | | Sbjct 734 CTTTGAG-CGTTAGGTTTCTCTCAGTAGCACATGATGGTGAT-A--AGTCTAAGTTCATA 789 Query 721 GAGCCAACAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACTAA 774 | |||||||||||||||||||||||||||| |||| ||||||||| |||||||| Sbjct 790 GCGCCAACAGGTCTGCTTGTTGACTTCTGTGTCCCGCGCTTATCTATCAACTAA 843 > AT1G51670.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48180.1); Has 37 Blast hits to 37 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19156504-19158749 FORWARD LENGTH=960 Length=960 Score = 69.4 bits (37), Expect = 5e-11 Identities = 99/127 (78%), Gaps = 12/127 (9%) Strand=Plus/Plus Query 95 ACGATGCATCT-CAACATGCAGCTATGGTAGCGG-TGAATCTGATTAGCTCTGCACGGGT 152 |||||| |||| | | ||| ||||| ||||||| || | ||||| |||||||||||| | Sbjct 104 ACGATGAATCTGCTTC-TGCTGCTATCGTAGCGGTTG-AGCTGATAAGCTCTGCACGGCT 161 Query 153 T--ATCTTCAAACTTGACTCTGGGT--ATACTGAGTACTCAGCTCAGTATTTGGTGGATA 208 | | ||| || || || | | || ||||||||||||||||||||||||||||| | Sbjct 162 TGCA-CTT-AAGCTGGA-T-AGTGTCCGCACTGAGTACTCAGCTCAGTATTTGGTGGACA 217 Query 209 ACGCTGG 215 | ||||| Sbjct 218 AAGCTGG 224 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37625376103 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5