BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893726
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18070.1 | Symbols: DRT101 | phosphoglucosamine mutase-relat... 2538 0.0
> AT5G18070.1 | Symbols: DRT101 | phosphoglucosamine mutase-related
| chr5:5981007-5982934 FORWARD LENGTH=1928
Length=1928
Score = 2538 bits (1374), Expect = 0.0
Identities = 1579/1678 (94%), Gaps = 14/1678 (1%)
Strand=Plus/Plus
Query 1 ATGGACGAGATCCAAATTGCTTCACTCCTCAAATCATCTGAGCTTTTTCCGATTCCTCAA 60
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||
Sbjct 111 ATGGACGAGATCCAAATAGCTTCAATCCTCAAATCATCTGAGCTTTTTCCGATTCCACAA 170
Query 61 AGCGTCAAGCTTTCGTATGGAACAGCTGGGTTCCGAGGCGATGCAAAGTTGCTT-GAATC 119
|||||||||||||||||||||||||||| ||| |||||||||||||||| || |||||
Sbjct 171 GGCGTCAAGCTTTCGTATGGAACAGCTGGATTCAGAGGCGATGCAAAGTT-ATTGGAATC 229
Query 120 AACTGTCTACAGAGTTGGGATTCTCTCAGCTCTCCGATCGCTCAAGCTTGGATCAGCCAC 179
|||||| || ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 230 AACTGTGTATAGAGTTGGGATTCTCTCAGCTCTCCGATCACTTAAGCTTGGATCAGCCAC 289
Query 180 CGTCGGGCTTATGATCACAGCTTCGCATAACAAAGTCTCTGACAATGGCATTAAAGTTTC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 CGTCGGGCTTATGATCACAGCTTCGCATAACAAAGTCTCTGACAATGGCATTAAAGTTTC 349
Query 240 AGATCCATCTGGAGGTATGCTTTCTCAGGAATGGGAGCCTTTCGCAGATCAGATCGCTAA 299
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 350 AGATCCATCTGGTTTTATGCTTTCTCAGGAATGGGAGCCTTTTGCAGATCAGATCGCTAA 409
Query 300 CGCATCTTCTCCTCAAGAACTCGTTTCATTGATTAGAGAATTCATGGAGAAGGAAGAGAT 359
||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 410 CGCATCTTCTCCTGAAGAACTCGTTTCGTTGATTAGAAAATTCATGGAGAAGGAAGAGAT 469
Query 360 TATGATCGGAGAGAAGAAGAAAAGTGCAGAGGTTTGGTTGGGAAGAGATACTAGACCTAG 419
| ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 470 TGCAATCGGAGAGAATAATAAAGGTGCAGAGGTTTGGTTGGGAAGAGATACTAGACCTAG 529
Query 420 TGGTGAATCGCTTCTCCGAGCTGCG-GAGATTGGAGTTGGATCAGTTTTGGGATCTGTTG 478
||||||||| |||||| |||||| | ||||| |||||||| ||| |||||||||||||||
Sbjct 530 TGGTGAATCACTTCTCAGAGCTG-GTGAGATCGGAGTTGGTTCAATTTTGGGATCTGTTG 588
Query 479 CGATTGACATTGGGATTTTGACGACTCCGCAATTGCATTGGATGGTTAGAGCTAAGAATA 538
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 589 CGATTGACATTGGGATTTTGACAACTCCGCAATTGCATTGGATGGTTAGAGCTAAGAATA 648
Query 539 AAGGTCTTAAGGCAACTGAGAATGATTACTTTGAGAATCTCTCTAGTTCATTTAGGTGTT 598
|||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct 649 AAGGTCTTAAGGCAACTGAGAATGATTACTTTGAGAATCTATCTACTTCGTTTAGGTGTT 708
Query 599 TGATTGATCTGATTCCA-GTTAGTGGAAATGATAAGTTAGAGATTAGCAAATTGCTTGTA 657
|||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 709 TGATTGATTTGATTCCAAGC-AGTGGAAATGATAAGTTAGAGATTAGCAAATTGCTTGTA 767
Query 658 GATGGTGCTAATGGTGTAGGTGGACAGAAGATTGAGGAGCTAAGAGGGTCTTTGAGTAAT 717
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 768 GATGGTGCTAATGGTGTAGGTGGACAGAAGATTGAGAAGCTAAGAGGGTCTTTGAGTAAT 827
Query 718 CTT-GATCTTGAGATTCGTAACACAGGGAGAGATGGTGGTGTGCTTAATGAAGGTGTAGG 776
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 -TTAGATGTTGAGATTCGTAACACAGGGAGAGATGGTGGTGTGCTTAATGAAGGTGTAGG 886
Query 777 TGCTGATTTTGTGCAGAAAGAAAAGGTTTTGCCTTTAGGATTTGGGTCTAAGGATGTTGG 836
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 887 TGCTGATTTTGTGCAGAAAGAAAAGGTTTTGCCTGTAGGATTTGGGTTTAAGGATGTTGG 946
Query 837 GATGAGGTGTGCGAGTTTGGATGGTGATGCAGATCGATTGGTTTACTTTTACATTCCTTC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 GATGAGGTGTGCGAGTTTGGATGGTGATGCAGATCGATTGGTTTACTTTTACATTCCTTC 1006
Query 897 AGAGTCTTCTGATAAGGTTGAGCTACTAGACGGCGATAAGATTCTGTCTTTGTTTGCTCT 956
||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1007 AGATTCTTCTGAAAAGGTTGAGCTACTTGACGGTGATAAGATTCTGTCTTTGTTTGCTCT 1066
Query 957 CTTCATCAAAGAGCAGTTAAACATTCTTGGTG-ATGATAAAGAA-GGAAAGCAGTCTCGT 1014
||||||||||||||| |||| ||| || | ||||| ||||| |||| ||||||||||
Sbjct 1067 CTTCATCAAAGAGCAACTAAATGCTCT-GGAGGATGATGAAGAAAGGAA-GCAGTCTCGT 1124
Query 1015 CTTGGTGTTGTGCAGACAGCTTATGCGAATGGTGCATCCACTGATTACCTAAGGCAGTTG 1074
||||||||||||||||||||||| ||||||||||| || ||||||||||||| ||| |||
Sbjct 1125 CTTGGTGTTGTGCAGACAGCTTACGCGAATGGTGCGTCTACTGATTACCTAAAGCATTTG 1184
Query 1075 GGTTTAGATGTTGTTTTCGCAAAAACCGGGGTAAAGCATTTACACGAGAAAGCAGCAGAG 1134
||||||||||||||||| || ||||| || || |||||||||||||||||||||||||||
Sbjct 1185 GGTTTAGATGTTGTTTTTGCTAAAACTGGAGTTAAGCATTTACACGAGAAAGCAGCAGAG 1244
Query 1135 TTTGATATCGGGATCTACTTTGAAGCTAATGGCCACGGGACTATACTCTTCTCGGAATCT 1194
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1245 TTTGATATTGGAATCTACTTTGAAGCTAATGGCCACGGGACTATTCTCTTCTCGGAATCT 1304
Query 1195 TTCCTATCTTGGTTAGTTTCCAAACAAAAGGATCTTATGGCCAAAGGTCAGGGTGGTTCA 1254
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1305 TTCCTATCTTGGTTAGTTTCCAAACAAAAGGATCTTACGGCTAAAGGTCAGGGTGGTTCT 1364
Query 1255 GAAGAACACAAAGCGGTTTCTAGACTAGTTGCGGTGAGTAACCTGATTAACCAAGCGGTT 1314
||||| |||||||| |||||||||||| | ||||||||||| |||||||||||||||||
Sbjct 1365 GAAGAGCACAAAGCTGTTTCTAGACTAATGGCGGTGAGTAATCTGATTAACCAAGCGGTA 1424
Query 1315 GGTGATGCTCTAAGTGGAGTGCTCTTGGTTGAAGTGATTCTGCAACACATGGGATGGTCA 1374
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1425 GGTGATGCTCTAAGTGGAGTGCTCTTGGTTGAAGTGATTCTACAACACCTGGGATGGTCG 1484
Query 1375 ATACAGAAGTGGAATGTA-CTATACAAGGACCTTCCTAGCAGACAGATCAAGGTCGAAGT 1433
||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1485 ATAGAGAAGTGGAATG-AGCTATACAAGGACCTTCCTAGCAGGCAGATCAAGGTCGAAGT 1543
Query 1434 TCCAGACAGAACAGCGGTTGTGACCACAAGCGAAGAAACCGAGGCTCTGAGACCTTTGGG 1493
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1544 TCCAGATAGAACAGCGGTTGTGACCACAAGCGAAGAAACCGAGGCTCTGAGACCTATGGG 1603
Query 1494 GATTCAAGATGCTATTAATTCTGAAATCAACAAGTACCCGCGTGGCAGAGCTTTTATAAG 1553
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1604 GATTCAAGATGCTATTAATTCTGAAATCAAGAAGTACTCGCGTGGCAGAGCTTTTATAAG 1663
Query 1554 GCCATCAGGTACAGAAGATGTGGTGAGAGTATATGCAGAAGCATCCACTCAAGAAGCTGC 1613
|||||| |||||||||||||||||||||||||||||||| || ||||||||||||| |||
Sbjct 1664 GCCATCGGGTACAGAAGATGTGGTGAGAGTATATGCAGAGGCTTCCACTCAAGAAGATGC 1723
Query 1614 TGATTCTTTGGCTAATTCTGTGGCTCAGCTCGTCAAAAGCTTCCTTGGTTCAAGCTAA 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1724 TGATTCTTTGGCTAATTCTGTGGCTCAGCTCGTCAAAAGCTTCCTTGGTTCAAGCTAA 1781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579896525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5