BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893739
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03960.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 1855 0.0
AT5G18202.1 | Symbols: | unknown pseudogene | chr5:6017006-601... 226 6e-58
> AT3G03960.1 | Symbols: | TCP-1/cpn60 chaperonin family protein
| chr3:1024258-1027891 FORWARD LENGTH=2111
Length=2111
Score = 1855 bits (1004), Expect = 0.0
Identities = 1442/1656 (87%), Gaps = 20/1656 (1%)
Strand=Plus/Plus
Query 2 TGGGAATCTCGACGCAGTC-TCATGGAATTCAATCGATGCTTAAAGAAGGTTACAGACAT 60
|||| || |||| |||| | | |||| ||||||||||||||||||||||||||||| |||
Sbjct 179 TGGGTATGTCGATGCAGCCAT-ATGGTATTCAATCGATGCTTAAAGAAGGTTACAGGCAT 237
Query 61 CTCTCCGGTCTCGATGAGGCCGTCATTAAAAACATCGAAGCTTGCAAGGAGCTTTCTACC 120
||||| |||||||| || ||||||||||| ||||| ||||||||||||||||| || |||
Sbjct 238 CTCTCTGGTCTCGACGAAGCCGTCATTAAGAACATTGAAGCTTGCAAGGAGCTCTCCACC 297
Query 121 ATTACCCGCACTTCTCTTGGCCCCAATGGAATGAACAAAATGGTAATCAATCATTTGGAT 180
||||| ||||| ||||| || |||||||||||||| |||||||| ||||||||||||||
Sbjct 298 ATTACTCGCACCTCTCTCGGTCCCAATGGAATGAATAAAATGGTTATCAATCATTTGGAC 357
Query 181 AAGCTATTTGTCACAAATGATGCTGCCACTATTGTGAATGAACTTGAGATTCAGCACCCA 240
|| || |||||||||||||| ||||| ||||| |||||||| || ||||||||||||||
Sbjct 358 AAACTGTTTGTCACAAATGACGCTGCTACTATAGTGAATGAGCTCGAGATTCAGCACCCG 417
Query 241 GCAGCCAAAATTCTGGTGTTAGCTGCTAAGGCCCAGCAAGCGGAGATTGGAGATGGAGCC 300
|| || ||| ||||||| |||||||||||||| ||||||| || || |||||||||||
Sbjct 418 GCTGCTAAACTTCTGGTTTTAGCTGCTAAGGCTCAGCAAGAAGAAATCGGAGATGGAGCT 477
Query 301 AATCTGACCATTTCTTTTGCTGGAGAGCTTCTTCAAAACGCTGAGGAGCTTATTAGGATG 360
|||||||| || || |||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 478 AATCTGACAATCTCCTTTGCTGGTGAACTTCTTCAAAACGCTGAGGAGCTTATCAGGATG 537
Query 361 GGA-TTGCATCCGAGTGAGATCATTAGTGGATATACTAAAGCAAG-CAATAAGGCTGTTG 418
||| || ||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct 538 GGACTT-CATCCGAGTGAGATCATTAGTGGATATACTAAAGCT-GTCAGCAAGGCTGTTG 595
Query 419 AA-TATTTGGAGGAGCTTGTTGAGAGTGGTTCTGAGTCTATGGATGTACGTAATAAAGAG 477
|| || | ||| | || ||||||| |||||||||| | |||||||||||||| || ||
Sbjct 596 AAATACT-GGAACAACTGGTTGAGACTGGTTCTGAGACCATGGATGTACGTAACAAGGAT 654
Query 478 GAAGTTGTGTCTCGGATGAGAGCAGCTGTTGCTAGCAAGCAATTTGGTCAAGAGGAGATT 537
|||||| | ||||||||||||||||||||||| |||||||| ||||| |||||||| ||
Sbjct 655 GAAGTTATTTCTCGGATGAGAGCAGCTGTTGCAAGCAAGCAGTTTGGGCAAGAGGAAATA 714
Query 538 ATATGTTCTTTAGT-AGCTGATGCGTGCATTCAAGTCTGTCCCAAA-AATCCAACAAATT 595
|| || |||||||| | |||| || || ||||||||||| |||||| |||||||| ||||
Sbjct 715 ATTTGCTCTTTAGTTA-CTGACGCATGTATTCAAGTCTG-CCCAAAGAATCCAACGAATT 772
Query 596 TTAATCTGGATAATGTCCGTATTTCGAAACTTTTGGGAGGAGGTTTGCACAACTCGTGTA 655
| ||| |||||||||| ||| |||| || |||||||||||||| |||||||| || || |
Sbjct 773 TCAATGTGGATAATGTTCGTGTTTCCAAGCTTTTGGGAGGAGGCTTGCACAATTCTTGCA 832
Query 656 TAGTCCGTGGCATGGTTTTGAAAAGTGATGCTATTGGGAGCATTAAGCGAATGGAGAAGG 715
|||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||||| |
Sbjct 833 TAGTCCGTGGTATGGTCTTGAAAAGTGATGCTGTTGGTAGCATTAAGCGAATGGAGAAAG 892
Query 716 CTAAGGTTGCTGTGTTTGCTGATGGTGTTGATACTACTGCAACTGAGACGAAAGGAACTG 775
| ||||||||||| ||||||| ||| |||||||| |||||||| ||||| ||||||||||
Sbjct 893 CGAAGGTTGCTGTATTTGCTGGTGGCGTTGATACCACTGCAACAGAGACCAAAGGAACTG 952
Query 776 TCCTGATTCACAGTGCTGAGCAGCTGGAGAACTATGCGAAA-ACAGAAGAAGCTAAGGTT 834
|||| ||||| |||||||||||||| ||||||||||| ||| ||||| |||||||| |||
Sbjct 953 TCCTCATTCATAGTGCTGAGCAGCTAGAGAACTATGC-AAAGACAGAGGAAGCTAAAGTT 1011
Query 835 GAGGAATTGATAAAAGCCGTTGCTGAATCAGGAGCTAAAGTAATTGTTAGCGGAGGATCA 894
||||| ||||| ||||| ||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct 1012 GAGGAGTTGATTAAAGCAGTTGCGGAATCAGGAGCCAAAGTCATTGTTAGTGGAGGATCA 1071
Query 895 GTTGGTGAAATGGCATTGCATTTTTGTGAGCGCTACAAGTTAATGGTCTTAAAAATCAGC 954
|||| ||||||||||||||||| ||||||||||||||| ||||||| || |||||||||
Sbjct 1072 ATTGGAGAAATGGCATTGCATTTCTGTGAGCGCTACAAGATAATGGTATTGAAAATCAGC 1131
Query 955 TCAAAGTTTGAATTGCGGCGTTTCTGTCGTACAACCGGGGCAGTCGCTCAGTTGAAGCTT 1014
|||||||||||| || ||||||| || |||||| | ||||| ||||| || |||||||||
Sbjct 1132 TCAAAGTTTGAACTGAGGCGTTTTTGCCGTACAGCGGGGGCTGTCGCCCATTTGAAGCTT 1191
Query 1015 AACCGACCAAGTCCTGATGACCTTGGCTATGTTGATTCTATATCAGTAGAGGAAATTGGT 1074
| ||| ||||| ||||| || ||||| ||||||||||||||||| || ||||||||||||
Sbjct 1192 AGCCGGCCAAGCCCTGAAGATCTTGGATATGTTGATTCTATATCGGTTGAGGAAATTGGT 1251
Query 1075 GGTGTGAGAGTCACCATTGCAAGAAATGAGGAGGGCGGTAACTCCATTTCTACAGTAGTA 1134
||||||| |||||| ||||||||||| ||||| || ||||||||||| || || || ||
Sbjct 1252 GGTGTGACAGTCACGATTGCAAGAAACGAGGAAGGTGGTAACTCCATCTCCACTGTGGTC 1311
Query 1135 TTGCGCGGAAGCACAGATAGCATATTGGATGACCTCGAAAGAGCTGTGGATGATGGAGTT 1194
||||| ||||||||||||||||| ||||| ||||| || |||||||| ||||||||||||
Sbjct 1312 TTGCGTGGAAGCACAGATAGCATTTTGGACGACCTTGAGAGAGCTGTTGATGATGGAGTT 1371
Query 1195 AATACATACAAGGCCATGTGCAGAGATAGCCGTATTGTTCCTGGAGCTGCAGCTACTGAA 1254
|| ||||||||||||||||||||||| |||||||||||||| || |||||||| ||||||
Sbjct 1372 AACACATACAAGGCCATGTGCAGAGACAGCCGTATTGTTCCCGGGGCTGCAGCGACTGAA 1431
Query 1255 ATAGAATTGGCTCAAAGATTGAAGGAATATGCCAATGCAGAAACT-GGGTTGGACAAATA 1313
||||| ||||||||||| ||||||||||| ||||||||||||| | ||||||||||||||
Sbjct 1432 ATAGAGTTGGCTCAAAGGTTGAAGGAATACGCCAATGCAGAAA-TAGGGTTGGACAAATA 1490
Query 1314 CGCTATCTCCAAATTCGCAGAGAGCTTTGAATTTGTGCCTAAAACCCTTGCAGATAATGC 1373
|| ||| |||||| ||| ||||| ||||| ||||| || || |||||||||||||||||
Sbjct 1491 TGCCATCACCAAATACGCTGAGAGTTTTGAGTTTGTACCCAAGACCCTTGCAGATAATGC 1550
Query 1374 CGGCCTCAATGCAATGGAGATCACAGCTTCTCTGTACACTGGACATGGATCTGGAAACGC 1433
||||||||||| ||||| |||| ||| ||||||||||||||||||||||||||||| |
Sbjct 1551 TGGCCTCAATGCGATGGAAATCATAGCCGCTCTGTACACTGGACATGGATCTGGAAACAC 1610
Query 1434 AAAACTTGGCATCGACTTAGAGGAAGGTGTTTGTAAAGACGTCTCAGATACAAAAGTATG 1493
|||||| ||||| |||||||||||||||| ||||||||| || ||||| |||||||||||
Sbjct 1611 AAAACTAGGCATTGACTTAGAGGAAGGTGCTTGTAAAGATGTTTCAGAGACAAAAGTATG 1670
Query 1494 GGATCTTTATTCCA-CCAAGTTATTCGCTCTTAAGTATGCTGCAGATGCTGCATGCACCG 1552
|||||||| || || |||||||||| || ||||| |||||| |||||||||||||||| |
Sbjct 1671 GGATCTTT-TTGCAACCAAGTTATTTGCCCTTAAATATGCTTCAGATGCTGCATGCACTG 1729
Query 1553 TGCTACGCGTAGACCAGATTATAATGGCTAAACCAGCAGGTGGGCCGAGGAGAGATGCAG 1612
| || || |||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 1730 TACTTCGTGTAGACCAGATTATAATGGCGAAACCAGCAGGTGGACCAAGGAGAGATGCAG 1789
Query 1613 CTGCA-GCCGCTGGTGCAGGCATGGACGAAGACTAA 1647
|| || || || ||||| || ||| |||||||||
Sbjct 1790 CT-CAAGCTGCAGGTGCTGGTGCGGAGGAAGACTAA 1824
> AT5G18202.1 | Symbols: | unknown pseudogene | chr5:6017006-6017378
FORWARD LENGTH=270
Length=270
Score = 226 bits (122), Expect = 6e-58
Identities = 141/150 (94%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 1 ATGGGAATCTCGACGCAGTCTCATGGAATTCAATCGATGCTTAAAGAAGGTTACAGACAT 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAATCTCTACGCAGTCTCATGGAATTCAATCGATGCTTAAAGAAGGTTACAGACAT 60
Query 61 CTCTCCGGTCTCGATGAGGCCGTCATTAAAAACA-TCGAAGCTTGCAAGGAGCTTTCTAC 119
||| | ||||| |||||||||||||| ||||||| | |||||||||||||||||||| ||
Sbjct 61 CTCGCTGGTCTTGATGAGGCCGTCATCAAAAACACT-GAAGCTTGCAAGGAGCTTTCCAC 119
Query 120 CATTACCCGCACTTCTCTTGGCCCCAATGG 149
||||||||||||||||||| ||||||||||
Sbjct 120 CATTACCCGCACTTCTCTTAGCCCCAATGG 149
Score = 134 bits (72), Expect = 4e-30
Identities = 76/78 (97%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 1570 ATTATAATGGCTAAACCAGCAGGTGGGCCGAGGAGAGATGCAGCTGCAGCCGCTGGTGCA 1629
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 193 ATTATAATGGCTAAACCAGCAGGTGGGCCGAGGAGAGATGCAGCTGCAGCAGCCGGTGCA 252
Query 1630 GGCATGGACGAAGACTAA 1647
||||||||||||||||||
Sbjct 253 GGCATGGACGAAGACTAA 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81375083445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5