BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893752
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18320.1 | Symbols: | ARM repeat superfamily protein | chr5... 2006 0.0
AT5G18340.1 | Symbols: | ARM repeat superfamily protein | chr5... 959 0.0
AT2G09994.1 | Symbols: | pseudogene of U-box domain-containing... 599 2e-170
> AT5G18320.1 | Symbols: | ARM repeat superfamily protein | chr5:6064431-6066186
REVERSE LENGTH=1377
Length=1377
Score = 2006 bits (1086), Expect = 0.0
Identities = 1284/1381 (93%), Gaps = 8/1381 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGACGCGACGGAAACGAACGCCGATACTCTGCGGCGGGAGTTACAGAAAGTATTG 60
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGATTCGACGGAAACAAACGCCGATACTCTGCGGCGGGAGTTACAGAAAGTATTG 60
Query 61 ACGGAGATTTTTAACGACGGAGGGGGCAAAGGTCGCGGTGAGACTGAAGATTGTTT-TGG 119
||||||||||| ||||||||||| ||||| | ||||| ||||||||||| || ||| |||
Sbjct 61 ACGGAGATTTTGAACGACGGAGGAGGCAATGATCGCGATGAGACTGAAGCTT-TTTCTGG 119
Query 120 AGTTTTGAAAGCGATTGATGAAGCGATTAGAATCCTGACTTGTCTGAGGAAAGTAGAATC 179
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 120 AGTTGTGAAAGCGATTGATGAAGCGGTTAGAATCCTGACTTGTCTGAGGAAAGTAGAATC 179
Query 180 GAAGAAACCGGAATTTGATATTTCTCCGGTGGAAGTTCCCAAAGAGTTTATATGTACACT 239
||||| |||||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 180 GAAGATACCGGAATCTGATATTTCTCCGGTGGAAGTGCCGAAAGAGTTTATATGTACACT 239
Query 240 CTCTAATACGATCATGATCGAGCCTGTGATCATAGCTTCTGGGCAGACTTATGAAAAGAG 299
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 240 CTCCAATACGATCATGATCGAGCCTGTGATCATTGCTTCTGGGCAGACGTATGAAAAGAG 299
Query 300 ATATATCACAGAGTGGCTGAAGCATGAACGTACATGTCCCAAAACCAAACAAATCCTCTC 359
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 300 ATATATCACAGAGTGGCTGAAGCATGAACGTACATGTCCCAAAACCAAACAAGTCCTTTC 359
Query 360 TCACTGT-TTGTGGATACCAAACCATTTGATCAATGAGTTGATTACGCAATGGTGTCGAG 418
|||| || || |||||||||||||||||||||| ||| ||||||||||||||||| | |
Sbjct 360 TCACCGTCTT-TGGATACCAAACCATTTGATCAGTGACTTGATTACGCAATGGTGCCTTG 418
Query 419 TTAACAAAGT-TGATCGGCAAAAACCATCTGATGAATTAGCCACTGAGCTGTTCACTGGT 477
|||||||| | ||||| |||||||||||||||||||||| | |||||||||||||| ||
Sbjct 419 TTAACAAA-TATGATCATCAAAAACCATCTGATGAATTAGTCGCTGAGCTGTTCACTAGT 477
Query 478 GACATCGAAGCATTGCTTCAGCGGATTTCATCTTCCTCCTCGGTCGCGGATCAGATAGAA 537
||||| ||||||||||| |||||| |||| ||||||||||| || || ||||||||||||
Sbjct 478 GACATAGAAGCATTGCTACAGCGGGTTTCCTCTTCCTCCTCTGTTGCAGATCAGATAGAA 537
Query 538 GCTGCAAAAGAGCTGCGTCGCCAGACGAAGAGATTTCCTAATGTCCGAGTCTTCTTTGTC 597
||||||||||||||||||| |||||| |||| |||||||||||| || ||||||||||||
Sbjct 538 GCTGCAAAAGAGCTGCGTCACCAGACCAAGAAATTTCCTAATGTTCGGGTCTTCTTTGTC 597
Query 598 GCTGGAATCCATGATTCGATCACCCGTTTGCTCAGTCCGCTCTCTGCTTTGGGCGAGGCA 657
||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||
Sbjct 598 GCTGGAATCCATGATTCTATCACCCGTTTGCTCAGTCCGCTCTCTACTTTGGACGAGGCA 657
Query 658 GTAGACTCGAATC-CAGAGCTTCAAGAGAATATTATCACAGCATTGTTCAACCTCTCGAT 716
|||||||| | || | |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 658 GTAGACTCTAGTCTC-GAGCTTCAAGAGAATATTGTCACAGCTTTGTTCAACCTCTCGAT 716
Query 717 TCTTGAGAATAATAAAACAGTGATTGCTGAAAACCGTCTAGTGATCCCTCTGCTCACAAA 776
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 717 TCTTGAGAGTAATAAAACAGTGATTGCTGAAAACTGTCTAGTGATCCCTCTGCTTACAAA 776
Query 777 GTCTTTGAAGCAGGGGACAGCTGAGACACGAAGAAACGCTGCAGCTACTTTATCGTCACT 836
|||||||||||||||||||| ||||||||||||||||||||| || |||||||| |||||
Sbjct 777 GTCTTTGAAGCAGGGGACAGATGAGACACGAAGAAACGCTGCTGCGACTTTATCATCACT 836
Query 837 TTCAGCCATTGATTCTAACAAGATCATCATTGGGAGCTCGGAAGCACTCAGGGCTCTGAT 896
||||||||||||||||||||||||||| ||||||| ||||||||| | | |||| ||||
Sbjct 837 TTCAGCCATTGATTCTAACAAGATCATTATTGGGAACTCGGAAGCGGTAAAGGCTTTGAT 896
Query 897 TGATCTTATCGAAGAGGGTGATTTGTTAGCCACCAAAGAAGCCACTTCCACGGTCTTTAA 956
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 897 TGATCTTATCGAAGAGGGTGATTTGTTAGCTACCAAAGAAGCCACTTCCACTGTCTTTAA 956
Query 957 CCTCTGTATTGTACTGGAGAACAAGGAAAAGGCGGTTTCAGCGGGTTTGATTCCTGCAGC 1016
|||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||
Sbjct 957 CCTCTGTATTGTACTGGAGAACAAGGGAAAGGTTGTTTCAGCGGGTTTGATTCATGCGGC 1016
Query 1017 AACCAAAAAGATCAAAGCAGGAAGCAATGTGGATGAGTTGTTATCTCTCTTGGCATTGAT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AACCAAAAAGATCAAAGCAGGAAGCAATGTGGATGAGTTGTTATCTCTCTTGGCATTGAT 1076
Query 1077 TTCTACACACAACAGGGCTATCGAAGAAATGGATAATCTAGGGTTTATCTATGATCTGTT 1136
|||||||||||| ||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 1077 ATCTACACACAACCGGGCTGTTGAAGAAATGGATAAACTAGGGTTTATCTATGATCTGTT 1136
Query 1137 CAAAATCTTGAGGAAACCGAGTTGCTTGCTGACCGGAGAGAACGCTGTAGTGATCGTCTT 1196
|| ||||||||||| |||||| |||||||||| || |||||||||||||||||||||||
Sbjct 1137 CAGTATCTTGAGGAAGCCGAGTAGCTTGCTGACTGGTGAGAACGCTGTAGTGATCGTCTT 1196
Query 1197 CAACATGTGTGACAGAAACAGAGACAGGTCGAGACTGAAAGTGGTAGGAGAAGAGGAGAA 1256
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1197 CAACATGTATGACAGAAACAGAGACAGGTCCAGACTGAAAGTGGTAGGAGAAGAGGAGAA 1256
Query 1257 TCAACACGGGACATTTACGAAGCTTGCAAAGCAAGGATCAGTTCGTGCGGTGAGAAAAGC 1316
||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct 1257 TCAACACGGGACATTTACGAAGCTTGCGAAGCAAGGATCAGTTCGTGCAGCGAGAAAAGC 1316
Query 1317 ACAAGGGATTTTACAGTGGATTAAGAGATTCGTTACTGGTAAAGAGCCACAGAGGGCATG 1376
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1317 ACAAGGGATATTACAGTGGATAAAGAGATTCGTTACTGGTAAAGAGCCACAGAGGGCATG 1376
Query 1377 A 1377
|
Sbjct 1377 A 1377
> AT5G18340.1 | Symbols: | ARM repeat superfamily protein | chr5:6070640-6072310
REVERSE LENGTH=1483
Length=1483
Score = 959 bits (519), Expect = 0.0
Identities = 1121/1396 (80%), Gaps = 104/1396 (7%)
Strand=Plus/Plus
Query 3 GGCGGACGCGACGGAAACGAACGCCGATACTCTG---C---GGCGGGAGTT-ACAGAAAG 55
|||||||||||||||||| ||||||||||||||| | |||||||||| | |||| |
Sbjct 127 GGCGGACGCGACGGAAACAAACGCCGATACTCTGACACTGAGGCGGGAGTTGA-AGAAGG 185
Query 56 TATTGACGGAGATTTTTAACGACGGAGGGGGCAAAGGTCGCGGTGAGACTGAAGATTGTT 115
|| ||||||||| ||| ||||||||||| | |||| |||| || || |||
Sbjct 186 TACTGACGGAGAATTTAAACGACGGAGGAGTTAAAGATCGC-GT-----TG-AGA----- 233
Query 116 TTGGAGTTTTGAAAGCGATTGATGAAGCGATTAGAATCCTGACTTGTCTGAGGAAAGTAG 175
| ||||| |||||||||| |||||||||||||||| | | |||| || |||||
Sbjct 234 ---CCG---TGAAATCGATTGATGAGGCGATTAGAATCCTGAATCGACTGAAGATAGTAG 287
Query 176 AATCGAAG-A----AA-CCGGAATTTGATATTTCTCCGGTGGAAGTTCCCAAAGAGTTTA 229
|||||||| | || | ||||| ||||| |||| |||| |||||||| |||||||| |
Sbjct 288 AATCGAAGAAGCGGAAGCGGGAATCTGATAGTTCTTCGGTTGAAGTTCCGAAAGAGTTCA 347
Query 230 TA-TGTACACTCTCTAATACGATCATGATCGAGCCTGTGATCATAGCTTCTGGGCAGACT 288
| ||||||||||| || |||||||||||||| |||||||||||| ||||||||||||
Sbjct 348 -AGTGTACACTCTCGAAGACGATCATGATCGATCCTGTGATCATATTTTCTGGGCAGACG 406
Query 289 TATGAAAAGAGATATATCACAGAGTGGCTGAAGCATGAACGTACATGTCCCAAAACCAAA 348
|||||||||||||||||||||||||||||||| ||||| | ||||||||||| | |||||
Sbjct 407 TATGAAAAGAGATATATCACAGAGTGGCTGAACCATGACCTTACATGTCCCACAGCCAAA 466
Query 349 CAAATCCTCTCTCACTGTTTG-TGGATACCAAACCATTTGATCAATGAGTTGATTACGCA 407
||| |||| | || ||||| | || ||| ||||||||||||||||||||||||||||
Sbjct 467 CAAGTCCTTTATC-GAGTTTGTTTGACACCCAACCATTTGATCAATGAGTTGATTACGCG 525
Query 408 ATGGTGTCGAGTTAACAAAGT-TGATCGGC-A-----AAAACCATCTGAT---GAAT-TA 456
|||||||| | ||||||| | |||||||| | ||||||||||||| || | |
Sbjct 526 ATGGTGTCTTGCTAACAAA-TATGATCGGCCAGCCCCAAAACCATCTGATATTGACTAT- 583
Query 457 GCCACTGAGCTGTTCACTGGTGACATCGAAGCATTGCTTCAGCGGATTTCATCT--T-CC 513
| || ||||||||||||| || ||||||| | ||||||||||||||||| ||| | ||
Sbjct 584 GTAACGGAGCTGTTCACTGATGGCATCGAATCGTTGCTTCAGCGGATTTCCTCTCCTTCC 643
Query 514 TCCTCGGTCGCGGATCAGATAGAAGCTGCAAAAGAGCT-GCGTCGCCAGAC-GAAGAGAT 571
|||||||| || ||||||| |||||||||||||||||| || | |||||| ||| | ||
Sbjct 644 TCCTCGGTTGCAGATCAGACAGAAGCTGCAAAAGAGCTAGCC-CTCCAGACCGAAAA-AT 701
Query 572 TTC-CTAATGTCCGAGTCTTCTTTGTCGCTGGAA-TCCATGATTCGATCACCCGTTTGCT 629
|| | |||||||| | ||||||| || |||| ||| ||||||||||||| | || ||
Sbjct 702 TTGTC-AATGTCCGTGACTTCTTTATCAA-GGAACTCCCTGATTCGATCACCAGGTTACT 759
Query 630 CAGTCCGCTCTCTGCTTTGGGCGAGGCAG-TAGACTCGAATCCAGAGCTTCAAGAGAATA 688
|| ||||||||||| ||||||||| | || ||||||||||||| ||||||||||||||||
Sbjct 760 CACTCCGCTCTCTGTTTTGGGCGATG-AGGTAGACTCGAATCCCGAGCTTCAAGAGAATA 818
Query 689 TTATCACAGCATTGTTCAACCTCTCGATTCTT-GAGAATAATAAAACAGTGA-TTGCTGA 746
| ||||||| ||||||||| | |||| | || ||||| ||||||||||| | |||||||
Sbjct 819 TCGTCACAGCGTTGTTCAACATGTCGACT-TTCGAGAAGAATAAAACAGT-ACTTGCTGA 876
Query 747 AAACCGTCTAGTGATCCCTCTGCTCACAAAGTCTTTGAAGCAGGGGACAGCTGAGACACG 806
||||| || ||||||||| ||||| |||||||| ||||||||||| ||| || |||| |
Sbjct 877 AAACCATCAAGTGATCCCACTGCTTGCAAAGTCTATGAAGCAGGGGTCAGTTGTGACAAG 936
Query 807 AAGAAACGCTGCAGCT-ACTTTATCGTCACTTTCAGCCATTGATTCTAACAAGATCATCA 865
|||||||||| || | |||||| |||||||||||| |||||||||||||||||||||||
Sbjct 937 AAGAAACGCTACAT-TGACTTTAGCGTCACTTTCAGACATTGATTCTAACAAGATCATCA 995
Query 866 TTGGGAGCTCGGAAGCACTCAGGGCTCTGATTGATCTTATCGAAGAG--GG-TGATTTGT 922
| |||| ||||| |||||||| ||||||||| ||||| |||| ||| || ||| || |
Sbjct 996 TAGGGAACTCGGTAGCACTCAAGGCTCTGATAGATCTAATCGGGGAGTTGGATGACTTAT 1055
Query 923 TAGCCAC-CAAAGAAGCCACTTCCACGGTCTT-TA-ACCTCTGTAT-TG-T-ACTGG-AG 975
||| || || || || ||| || | || || |||||||| | || | | || ||
Sbjct 1056 CAGCTACTCAT-GATGCT-CTTTG-CGCTGTTATAGACCTCTGT-TGTGATGAAAGGGAG 1111
Query 976 AACAAGGAAAA-GGCGGTTTCAGC-GGGTTTGATTCCTGCAGCAACCAAAAAGATCAAAG 1033
||| |||||| |||| | || | ||| ||| |||||| |||| |||||| |||||||
Sbjct 1112 AACT-GGAAAAAGGCGATCTC-GTTGGGGTTGGCTCCTGCTGCAATCAAAAATATCAAAG 1169
Query 1034 CAGGAAGCAATGTGGATGAGTTGTTATCT-CTCTTGGCATTGATTTCTACACAC-AACAG 1091
|| |||| ||| || ||| | ||| || | |||||||||||||||| ||||| ||| |
Sbjct 1170 CAAGAAGAAATTTGTTTGAATCCTTAGCTGC-CTTGGCATTGATTTCTCCACACGAAC-G 1227
Query 1092 GGCTATCGAAGAAATGGATAATCTAGGGTTTATCTATGATCTGTTCAAA-ATCTTGAGGA 1150
| |||| | ||| ||| |||||||||| |||||||||||||||| || ||||||||||
Sbjct 1228 CGTTATCCAGGAAGTGGCTAATCTAGGGGTTATCTATGATCTGTT-AAGTATCTTGAGGA 1286
Query 1151 AACCGAGTTGCTTGCTGACCGGAGAGAACGCTGTAGTGATCGTCTTCAACATGTGTGAC- 1209
|| | |||||| || |||| | |||||||||||||||||||| |||||||| || |
Sbjct 1287 AAACAAGTTGCATGGTGACTTGTGAGAACGCTGTAGTGATCGTAGGCAACATGTATG-CT 1345
Query 1210 AGAAA-CAGAGACAGGTCGAG-ACTGAAAGTGGTAGG-AGAAGAGGAGAATCAACACGGG 1266
| ||| |||||| ||||| | | |||| | | || ||||||||||||||||||| |
Sbjct 1346 A-AAAGCAGAGAAAGGTCTATTAA-GAAAATCCT-GGCAGAAGAGGAGAATCAACACAAG 1402
Query 1267 ACATTTACGAAGCTTGCAAAGCAAGGATCAGTTCGT-GCGGTGA-GAAAAGCACAAGGGA 1324
|||||||| ||| |||||| ||||||||||||| || ||||||| |||| ||||||||||
Sbjct 1403 ACATTTACAAAGATTGCAACGCAAGGATCAGTT-GTTGCGGTGATGAAA-GCACAAGGGA 1460
Query 1325 TTTTACAGTGGATTAA 1340
|||||||||| |||||
Sbjct 1461 TTTTACAGTGTATTAA 1476
> AT2G09994.1 | Symbols: | pseudogene of U-box domain-containing
protein / armadillo/beta-catenin repeat family protein |
chr2:3782956-3784075 FORWARD LENGTH=1120
Length=1120
Score = 599 bits (324), Expect = 2e-170
Identities = 898/1158 (78%), Gaps = 107/1158 (9%)
Strand=Plus/Plus
Query 286 ACTTATGAAAAGAGATATATCACAGAGTGGCTGAAGCATGAAC-GTACATGTCCCAAAAC 344
||||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||| |
Sbjct 4 ACTTATGAAAAGAGATATATCACAGAGTGTATGAACCAT-AACCGTACATGTCCCAAATC 62
Query 345 CAAACAAATCCTCTCTC-ACTGT-TTGTGGATACCAAACCATTTGATCAATGAGTTGATT 402
||||||| |||||| || | ||| || || | || ||||||||||| ||||||||||||
Sbjct 63 CAAACAAGTCCTCTATCGAGTGTGTT-TG-ACGCCCAACCATTTGATTAATGAGTTGATT 120
Query 403 ACGCAATGGTGTCGAGTTAACAA-AG----T-TGATCGGC-A-----AAAACCATCTGAT 450
|||| |||||||| |||| ||| || | |||||||| | |||||||||||||
Sbjct 121 ACGCGATGGTGTCTTGTTAGCAATAGCAAATATGATCGGCCAGCCCCAAAACCATCTGAT 180
Query 451 ---GAATTAGCCACTGAGCTGTTCACTGG-TGACATCGAAGCATTGCTTCAGCGGATTTC 506
||| ||| || ||||||||||| || || ||||||| |||||||||||||||||
Sbjct 181 ATTGAAATAGTAACGGAGCTGTTCAC-GGATGGCATCGAATTGTTGCTTCAGCGGATTTC 239
Query 507 ATCT--T-CCTCCTCGGTCGCGGATCAGATAGAAGCTGCAAAAGAGCT-GCGTCGCCAGA 562
||| | |||||||||| || ||||||| |||||||||||||||||| || | ||| |
Sbjct 240 CTCTCCTTCCTCCTCGGTTGCAGATCAGACAGAAGCTGCAAAAGAGCTTGCC-CTCCA-A 297
Query 563 -CGAAGAGATTT--CCTAATGTCCGAGTCTTCTTTGTCGCTGGAA-TC-CATGATTCGAT 617
| || |||| || || ||||| | ||||||| || |||| | | |||||||||
Sbjct 298 TCCTCGAAATTTGTCC-AA-GTCCGTGACTTCTTTATCAA-GGAACTTTC-TGATTCGAT 353
Query 618 CACCCGTTTGCTCAGTCCGCTCTCTGCTTTGGGCGAGGCAG-TAGACTCGAATCCAGAGC 676
|||| | || |||| ||||||||||| ||||||||| | || ||||||||||||| ||||
Sbjct 354 CACCAGGTTACTCACTCCGCTCTCTGTTTTGGGCGATG-AGGTAGACTCGAATCCCGAGC 412
Query 677 TTCAAGAGAATATTATCACAGCATTGTTCAACCTCTCGATTCTT-GAGAATAATAAAACA 735
||||||||||||| ||||| ||||||||||| | |||| | || ||| | |||||||||
Sbjct 413 TTCAAGAGAATATCGTCACAACATTGTTCAACATGTCGACT-TTCGAGGAGAATAAAACA 471
Query 736 GTGA-TTGCTGAAAACCGTCTAGTGATCCCTCTGCTCACAAAGTCTT-TGAAGCAGGGGA 793
| | |||||||||||| || |||||||||| |||| |||||| || |||||||| |
Sbjct 472 CT-ACTTGCTGAAAACCATCAAGTGATCCCTGTGCTTGCAAAGT-TTATGAAGCAGAAGT 529
Query 794 CAGCTGAGACACGAAGAAACGCTGCAGCT-ACTTTA-TCGTCACTTTCAGCCATTGATTC 851
||| || |||| ||||||||||| || | |||| | | |||||||| || |||||||||
Sbjct 530 CAGTTGTGACAAGAAGAAACGCTACAT-TGACTTGAGT-GTCACTTTTAGACATTGATTC 587
Query 852 TAACAAGATCATCATTGGGAGCTCGGAAGCACTCAGGGCTCTGATTGATCTTATCGAAGA 911
||||||||||||||| |||| ||| | |||||||| ||||||||| |||||||||| ||
Sbjct 588 TAACAAGATCATCATAGGGAACTCAGTAGCACTCAAGGCTCTGATAGATCTTATCGGGGA 647
Query 912 G--GG-TGATTTGTTAGCCAC-CAAAGAAGCCACTTCCACGGTCTT-TA-ACCTCTGTAT 965
| || ||| || | ||| || || ||||| ||| || | || || |||||||| |
Sbjct 648 GTTGGATGACTTATCAGCTACTCAT-GAAGCT-CTTTG-CGCTGTTATATACCTCTGT-T 703
Query 966 -TG-T-AC-TGGAGAACAAGGAAAA-GGCGGTTTCAGC-GGGTTTGATTCCTGCAGCAAC 1019
|| | | |||||||| |||||| ||| | || | ||| |||| |||| |||
Sbjct 704 GTGATGAAATGGAGAACT-GGAAAAAGGCAATCTC-GTTGGGGTTGACTCCTTTTGCAGT 761
Query 1020 CAAAAAGATCAAAGCAGGAAGCAATGTGGAT-GAGTTGTTA-TCTCTCTTGGCATTGATT 1077
|| ||| ||||||||| |||| ||| | | | || | |||| | | ||||||||||||||
Sbjct 762 CAGAAATATCAAAGCAAGAAGAAAT-TCGTTTGACTCGTTAGT-TATCTTGGCATTGATT 819
Query 1078 TCTACACAC-AACAGGGCTATCGAAGAAATGGATAATCTAGGGTTTATCTATGATCTGTT 1136
||| |||| ||| | | |||| | ||| ||| |||| ||||| ||||||||||||||
Sbjct 820 TCTTTACACGAAC-GCGTTATCCAGGAACTGGCTAAT---GGGTT-ATCTATGATCTGTT 874
Query 1137 CAA--A-----AT-CTTGAGGAAACCGA-GTTGCTTGCTGACCGGAGAGAACGCTGTAGT 1187
|| | || ||||||||| | | ||||| || |||| | ||||||| ||||||
Sbjct 875 -AAGTATCTTGATTCTTGAGGAA-CAAAAGTTGCATGGTGACTTGTGAGAACGTTGTAGT 932
Query 1188 GATCGTCTTCAACATGTGTGACAGAAA-CAGAGACAGGTCGAG-ACTGAAAGTGGTAGG- 1244
|||||| |||||||| || | ||| || ||| ||||| | | ||||| | | ||
Sbjct 933 GATCGTAAGCAACATGTATGTTA-AAAGCA-AGAAAGGTCTATTA-TGAAAATCCT-GGC 988
Query 1245 AGAAGAGGAGAATCAACACGGGACATTTACGAAGCTTGCAAAGCAAGGATCAGTTCGT-G 1303
||||||||||||||||||| ||||||||| |||||||||| |||||||||| | || |
Sbjct 989 AGAAGAGGAGAATCAACACAAGACATTTACAAAGCTTGCAATGCAAGGATCACCT-GTTG 1047
Query 1304 CGGTGA-GAAAAGCACAAGGGATTTTACAGTGGATTAAGAG-ATT-CGTTACT-GGTAAA 1359
|||||| |||| ||||||||||||| ||| || |||| | | ||| | | || || ||
Sbjct 1048 CGGTGATGAAA-GCACAAGGGATTT-ACATTGTATTAGG-GTATTTCCTG-CTCGG-AAT 1102
Query 1360 GAGCCACAGAGGGCATGA 1377
| |||||||||||| |||
Sbjct 1103 GTGCCACAGAGGGCTTGA 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5