BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893755
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18340.1 | Symbols: | ARM repeat superfamily protein | chr5... 1659 0.0
AT2G09994.1 | Symbols: | pseudogene of U-box domain-containing... 1109 0.0
AT5G18320.1 | Symbols: | ARM repeat superfamily protein | chr5... 977 0.0
AT5G18330.1 | Symbols: | ARM repeat superfamily protein | chr5... 654 0.0
> AT5G18340.1 | Symbols: | ARM repeat superfamily protein | chr5:6070640-6072310
REVERSE LENGTH=1483
Length=1483
Score = 1659 bits (898), Expect = 0.0
Identities = 1221/1377 (89%), Gaps = 22/1377 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGATTCGACGGCGGACGCGACGGAAACAAACGCAGATACTCTGAGTCTGAGGCGG 60
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 113 ATGGCGGATTCGACGGCGGACGCGACGGAAACAAACGCCGATACTCTGACACTGAGGCGG 172
Query 61 GAGTTGAAGAAGGTACTGACGGAGAATTTATACGACGACGGAGGAGTCAAAGATGGCGTT 120
|||||||||||||||||||||||||||||| | ||||||||||||| |||||| |||||
Sbjct 173 GAGTTGAAGAAGGTACTGACGGAGAATTTA-A--ACGACGGAGGAGTTAAAGATCGCGTT 229
Query 121 GAGACTGTGAAATCGATTGATGAGGCGATTAGAATCCTGAATTGTCTGAA-A-AG-AGAA 177
||||| |||||||||||||||||||||||||||||||||||| | ||||| | || ||||
Sbjct 230 GAGACCGTGAAATCGATTGATGAGGCGATTAGAATCCTGAATCGACTGAAGATAGTAGAA 289
Query 178 TCGAAGAAGCGGAAGCGGGAATCTGATATTTCTCCGGTGGAAGTTCCGAAAGAGTTCAAG 237
|||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||
Sbjct 290 TCGAAGAAGCGGAAGCGGGAATCTGATAGTTCTTCGGTTGAAGTTCCGAAAGAGTTCAAG 349
Query 238 TGTACACTCTCCAAGACGATCATGATCGATCCTTTGATCAT-TTCTTCTGGGCAGACGTA 296
||||||||||| ||||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct 350 TGTACACTCTCGAAGACGATCATGATCGATCCTGTGATCATATT-TTCTGGGCAGACGTA 408
Query 297 TGAAAAGAGATATATCACAGAATGGCTCAACCATAACCGTACATGTCCCAAAACCAAAGA 356
||||||||||||||||||||| ||||| |||||| ||| ||||||||||| | ||||| |
Sbjct 409 TGAAAAGAGATATATCACAGAGTGGCTGAACCATGACCTTACATGTCCCACAGCCAAACA 468
Query 357 ACTCCTCTCTCAAGTCCGTATGACACCCAACCATTTGATCAATGACTTGATTACGCAATG 416
| |||| | || ||| || ||||||||||||||||||||||||| |||||||||| |||
Sbjct 469 AGTCCTTTATCGAGTTTGTTTGACACCCAACCATTTGATCAATGAGTTGATTACGCGATG 528
Query 417 GTGTCTTGTTAACAACAAAGTTGATCGGCCAAAACCACAACCATCTGATTTTGAAATAGT 476
|||||||| |||||| | | |||||||||| ||| ||||||||||| ||| | || |
Sbjct 529 GTGTCTTGCTAACAA-ATA--TGATCGGCCAGCCCCAAAACCATCTGATATTG-ACTA-T 583
Query 477 AGTAACTGAGATGGTCACTGGTGACATCGAACCATTGCTTCAGCGGATTTCCTCTCCTTC 536
||||| ||| || |||||| || ||||||| | ||||||||||||||||||||||||||
Sbjct 584 -GTAACGGAGCTGTTCACTGATGGCATCGAATCGTTGCTTCAGCGGATTTCCTCTCCTTC 642
Query 537 CTCCTCGGTTGCAGATCAGATGGAAGCTGCAAAAGAGCTTGCCCTCCAAACCTCGAAATT 596
|||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||
Sbjct 643 CTCCTCGGTTGCAGATCAGACAGAAGCTGCAAAAGAGCTAGCCCTCCAGACCGAAAAATT 702
Query 597 TGTCAATGTCCGTGACTTCTTTGTCGCCAAAATCCCTGATTCCATCACCAGGTTGCTCAC 656
|||||||||||||||||||||| || || |||||||||| ||||||||||| |||||
Sbjct 703 TGTCAATGTCCGTGACTTCTTTATCAAGGAACTCCCTGATTCGATCACCAGGTTACTCAC 762
Query 657 TCCTCTCTCTGTTTTGGGCGATGACGTAGACTCGAATCCCGAGCTTCAAGAGAATATTAT 716
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 763 TCCGCTCTCTGTTTTGGGCGATGAGGTAGACTCGAATCCCGAGCTTCAAGAGAATATCGT 822
Query 717 CACATCATTGTTCAACATGTCTACTTTTGAGCAGAATAAAACACTACTTGCTGAAAACCC 776
|||| | |||||||||||||| ||||| ||| ||||||||||| |||||||||||||||
Sbjct 823 CACAGCGTTGTTCAACATGTCGACTTTCGAGAAGAATAAAACAGTACTTGCTGAAAACCA 882
Query 777 TCAAGTGATCCCACTGCTTGCAAAGTCTTTGAAGCAGGGGACAGTTGTGACACGAAGAAA 836
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 883 TCAAGTGATCCCACTGCTTGCAAAGTCTATGAAGCAGGGGTCAGTTGTGACAAGAAGAAA 942
Query 837 CGCTGCAGCGACTTTAATGTCACTTGCAGACATTGATTCTAACAAGATCATCATAGGGAA 896
|||| || ||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 943 CGCTACATTGACTTTAGCGTCACTTTCAGACATTGATTCTAACAAGATCATCATAGGGAA 1002
Query 897 CTCGGAAGCACTCAAGGCTCTGATAGATCTAATCTTGGACTCGGATGACTTATCAGCCAC 956
||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||| ||
Sbjct 1003 CTCGGTAGCACTCAAGGCTCTGATAGATCTAATCGGGGAGTTGGATGACTTATCAGCTAC 1062
Query 957 -CAATGAAGCTGCTAA-CGCTATTTTAAACCTCTGTTTTGATGAATCGGAGAACTGCAAA 1014
|| ||| ||| || |||| || || ||||||||| ||||||| ||||||||| |||
Sbjct 1063 TCA-TGATGCT-CTTTGCGCTGTTATAGACCTCTGTTGTGATGAAAGGGAGAACTGGAAA 1120
Query 1015 AAGGCAATCTCGTTGGGGTTGGCTTCTGCCGTAACCAAAAATATCAAAGCAGGAAGAAAT 1074
||||| |||||||||||||||||| |||| | || |||||||||||||||| ||||||||
Sbjct 1121 AAGGCGATCTCGTTGGGGTTGGCTCCTGCTGCAATCAAAAATATCAAAGCAAGAAGAAAT 1180
Query 1075 GTGGATGAGTTGTTAGCTGTCTTGGTATTGATCTCTCCACACGAACGTGTTGTCGAGGAA 1134
|| ||| | ||||||| ||||| |||||| |||||||||||||| ||| || |||||
Sbjct 1181 TTGTTTGAATCCTTAGCTGCCTTGGCATTGATTTCTCCACACGAACGCGTTATCCAGGAA 1240
Query 1135 ATGGATAATGTAGGGGTTATCTATGATCTGTTAAGTATCTTGAGGAAAACAAGTTCCTTG 1194
||| |||| ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1241 GTGGCTAATCTAGGGGTTATCTATGATCTGTTAAGTATCTTGAGGAAAACAAGTTGCATG 1300
Query 1195 GTGACTTGTGAGAACGTTGTAGTGATTGTCCACAACATGTATGTTAAAAGCAGAGAAAGG 1254
|||||||||||||||| ||||||||| || ||||||||||| ||||||||||||||||
Sbjct 1301 GTGACTTGTGAGAACGCTGTAGTGATCGTAGGCAACATGTATGCTAAAAGCAGAGAAAGG 1360
Query 1255 TCTATTTTGAAA-TCCCTGGCAGAAGAGGAGAATCAACACAAGACATTTACAAAGCTTGC 1313
|||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1361 TCTATTAAGAAAATCC-TGGCAGAAGAGGAGAATCAACACAAGACATTTACAAAGATTGC 1419
Query 1314 AA-GCCAAGAATCAGTTCTTGTGGTGGGGAGAGCACAAGGGATTTTACAGGGTATTA 1369
|| || ||| ||||||| ||| |||| || ||||||||||||||||||| ||||||
Sbjct 1420 AACGC-AAGGATCAGTTGTTGCGGTGATGAAAGCACAAGGGATTTTACAGTGTATTA 1475
> AT2G09994.1 | Symbols: | pseudogene of U-box domain-containing
protein / armadillo/beta-catenin repeat family protein |
chr2:3782956-3784075 FORWARD LENGTH=1120
Length=1120
Score = 1109 bits (600), Expect = 0.0
Identities = 965/1136 (85%), Gaps = 45/1136 (4%)
Strand=Plus/Plus
Query 295 TATGAAAAGAGATATATCACAGAATGGCTCAACCATAACCGTACATGTCCCAAAACCAAA 354
||||||||||||||||||||||| || | |||||||||||||||||||||||| |||||
Sbjct 7 TATGAAAAGAGATATATCACAGAGTGTATGAACCATAACCGTACATGTCCCAAATCCAAA 66
Query 355 GAACTCCTCTCTCAAGTCCGTATGACACCCAACCATTTGATCAATGACTTGATTACGCAA 414
|| |||||| || ||| || |||| |||||||||||||| ||||| |||||||||| |
Sbjct 67 CAAGTCCTCTATCGAGTGTGTTTGACGCCCAACCATTTGATTAATGAGTTGATTACGCGA 126
Query 415 TGGTGTCTTGTTAAC-A-A-CAAAGT-TGATCGGCCAAAACCACAACCATCTGATTTTGA 470
||||||||||||| | | | |||| | |||||||||| ||| ||||||||||| |||
Sbjct 127 TGGTGTCTTGTTAGCAATAGCAAA-TATGATCGGCCAGCCCCAAAACCATCTGATATTG- 184
Query 471 AATAGTAGTAACTGAGATGGTCACTGG-TGACATCGAACCATTGCTTCAGCGGATTTCCT 529
|| | ||||||| ||| || |||| || || ||||||| |||||||||||||||||||
Sbjct 185 AA-A-TAGTAACGGAGCTGTTCAC-GGATGGCATCGAATTGTTGCTTCAGCGGATTTCCT 241
Query 530 CTCCTTCCTCCTCGGTTGCAGATCAGATGGAAGCTGCAAAAGAGCTTGCCCTCCAAACCT 589
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 242 CTCCTTCCTCCTCGGTTGCAGATCAGACAGAAGCTGCAAAAGAGCTTGCCCTCCAATCCT 301
Query 590 CGAAATTTGTC-AATGTCCGTGACTTCTTTGTCGCCAAAATCCCTGATTCCATCACCAGG 648
||||||||||| || ||||||||||||||| || || | ||||||| |||||||||
Sbjct 302 CGAAATTTGTCCAA-GTCCGTGACTTCTTTATCAAGGAACTTTCTGATTCGATCACCAGG 360
Query 649 TTGCTCACTCCTCTCTCTGTTTTGGGCGATGACGTAGACTCGAATCCCGAGCTTCAAGAG 708
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 TTACTCACTCCGCTCTCTGTTTTGGGCGATGAGGTAGACTCGAATCCCGAGCTTCAAGAG 420
Query 709 AATATTATCACATCATTGTTCAACATGTCTACTTTTGAGCAGAATAAAACACTACTTGCT 768
||||| ||||| |||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 421 AATATCGTCACAACATTGTTCAACATGTCGACTTTCGAGGAGAATAAAACACTACTTGCT 480
Query 769 GAAAACCCTCAAGTGATCCCACTGCTTGCAAAGTCTT-TGAAGCAGGGGACAGTTGTGAC 827
||||||| |||||||||||| |||||||||||| || |||||||| | ||||||||||
Sbjct 481 GAAAACCATCAAGTGATCCCTGTGCTTGCAAAGT-TTATGAAGCAGAAGTCAGTTGTGAC 539
Query 828 ACGAAGAAACGCTGCAGCGACTTTAATGTCACTTGCAGACATTGATTCTAACAAGATCAT 887
| ||||||||||| || ||||| | |||||||| ||||||||||||||||||||||||
Sbjct 540 AAGAAGAAACGCTACATTGACTTGAGTGTCACTTTTAGACATTGATTCTAACAAGATCAT 599
Query 888 CATAGGGAACTCGGAAGCACTCAAGGCTCTGATAGATCTAATCTTGGACTCGGATGACTT 947
|||||||||||| | |||||||||||||||||||||||| ||| ||| | |||||||||
Sbjct 600 CATAGGGAACTCAGTAGCACTCAAGGCTCTGATAGATCTTATCGGGGAGTTGGATGACTT 659
Query 948 ATCAGCCAC-CAATGAAGCTGCTAA-CGCTATTTTAAACCTCTGTTTTGATGAA-TCGGA 1004
|||||| || || ||||||| || |||| || || ||||||||| ||||||| | |||
Sbjct 660 ATCAGCTACTCA-TGAAGCT-CTTTGCGCTGTTATATACCTCTGTTGTGATGAAAT-GGA 716
Query 1005 GAACTGCAAAAAGGCAATCTCGTTGGGGTTGGCTTCTGCCGTAACCAAAAATATCAAAGC 1064
|||||| |||||||||||||||||||||||| || || | | || ||||||||||||
Sbjct 717 GAACTGGAAAAAGGCAATCTCGTTGGGGTTGACTCCTTTTGCAGTCAGAAATATCAAAGC 776
Query 1065 AGGAAGAAATGTGGAT-GAGTTGTTAGCTGTCTTGGTATTGATCTCTCCACACGAACGTG 1123
| |||||||| | | | || | ||||| | |||||| |||||| ||| ||||||||| |
Sbjct 777 AAGAAGAAAT-TCGTTTGACTCGTTAGTTATCTTGGCATTGATTTCTTTACACGAACGCG 835
Query 1124 TTGTCGAGGAAATGGATAATGTAGGGGTTATCTATGATCTGTTAAGTATCTTGAG----G 1179
|| || ||||| ||| ||||| || ||||||||||||||||||||||||||| |
Sbjct 836 TTATCCAGGAACTGGCTAATG--GG--TTATCTATGATCTGTTAAGTATCTTGATTCTTG 891
Query 1180 AA-AACAA--GTTCCTTGGTGACTTGTGAGAACGTTGTAGTGATTGTCCA-CAACATGTA 1235
| ||||| ||| | |||||||||||||||||||||||||||| || | |||||||||
Sbjct 892 AGGAACAAAAGTTGCATGGTGACTTGTGAGAACGTTGTAGTGATCGTA-AGCAACATGTA 950
Query 1236 TGTTAAAAGCAGAGAAAGGTCTATTTTGAAA-TCCCTGGCAGAAGAGGAGAATCAACACA 1294
||||||||||| ||||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 951 TGTTAAAAGCA-AGAAAGGTCTATTATGAAAATCC-TGGCAGAAGAGGAGAATCAACACA 1008
Query 1295 AGACATTTACAAAGCTTGCAA-GCCAAGAATCAGTTCTTGTGGTGGGGAGAGCACAAGGG 1353
||||||||||||||||||||| || ||| |||| | ||| |||| || ||||||||||
Sbjct 1009 AGACATTTACAAAGCTTGCAATGC-AAGGATCACCTGTTGCGGTGATGAAAGCACAAGGG 1067
Query 1354 ATTTTACAGGGTATTAGGGCATT-CGCTGCT-GGTAAAGAGACACAGAGGGCATGA 1407
|||| ||| ||||||||| ||| | ||||| || || | | |||||||||| |||
Sbjct 1068 ATTT-ACATTGTATTAGGGTATTTC-CTGCTCGG-AATGTGCCACAGAGGGCTTGA 1120
> AT5G18320.1 | Symbols: | ARM repeat superfamily protein | chr5:6064431-6066186
REVERSE LENGTH=1377
Length=1377
Score = 977 bits (529), Expect = 0.0
Identities = 1152/1437 (80%), Gaps = 106/1437 (7%)
Strand=Plus/Plus
Query 15 GGCGGACGCGACGGAAACAAACGCAGATACTCTGAGTCTGAGGCGGGAGTTGA-AGAAGG 73
|||||| |||||||||||||||| |||||||| | | |||||||||| | |||| |
Sbjct 3 GGCGGATTCGACGGAAACAAACGCCGATACTCT--G-C---GGCGGGAGTT-ACAGAAAG 55
Query 74 TACTGACGGAGAATTT-ATACGAC-GACGGAGG--A-G-T--C-A-AAGA-TG--GC--- 117
|| ||||||||| ||| | ||||| || ||||| | | | | | ||| || ||
Sbjct 56 TATTGACGGAGATTTTGA-ACGACGGA-GGAGGCAATGATCGCGATGAGACTGAAGCTTT 113
Query 118 GT-T-GAGACTGTGAAATCGATTGATGAGGCGATTAGAATCCTGAATTGTCTGA--AAAG 173
| | ||| ||||||| |||||||||| ||| |||||||||||| |||||||| ||||
Sbjct 114 TTCTGGAG-TTGTGAAAGCGATTGATGAAGCGGTTAGAATCCTGACTTGTCTGAGGAAAG 172
Query 174 -AGAATCGAAGAAGCGGAAGCGGGAATCTGATATTTCTCCGGTGGAAGTTCCGAAAGAGT 232
|||||||||| | | | ||||||||||||||||||||||||||| ||||||||||
Sbjct 173 TAGAATCGAAG-A----TA-CCGGAATCTGATATTTCTCCGGTGGAAGTGCCGAAAGAGT 226
Query 233 TCA-AGTGTACACTCTCCAAGACGATCATGATCGATCCTTTGATCATTTCTTCTGGGCAG 291
| | | |||||||||||||| |||||||||||||| ||| |||||||| |||||||||||
Sbjct 227 TTATA-TGTACACTCTCCAATACGATCATGATCGAGCCTGTGATCATTGCTTCTGGGCAG 285
Query 292 ACGTATGAAAAGAGATATATCACAGAATGGCTCAACCAT-AACCGTACATGTCCCAAAAC 350
|||||||||||||||||||||||||| ||||| || ||| ||| ||||||||||||||||
Sbjct 286 ACGTATGAAAAGAGATATATCACAGAGTGGCTGAAGCATGAAC-GTACATGTCCCAAAAC 344
Query 351 CAAAGAACTCCTCTCTCAA-GTCCGTATG-ACACCCAACCATTTGATCAATGACTTGATT 408
|||| || |||| ||||| ||| | || | ||| ||||||||||||| ||||||||||
Sbjct 345 CAAACAAGTCCTTTCTCACCGTCT-T-TGGATACCAAACCATTTGATCAGTGACTTGATT 402
Query 409 ACGCAATGGTGTCTTGTTAACAACAAAGTTGATCGGCCAAAACCACAACCATCTGATTTT 468
||||||||||| ||||||||||| | | | |||| | |||| || | |||||||
Sbjct 403 ACGCAATGGTGCCTTGTTAACAA-ATA-T-GATCATC-AAAA--AC--C-ATCTGAT--- 450
Query 469 GAAATAGTAGTAACTGAGATGGTCACTGGTGACATCGAACCATTGCTTCAGCGGATTTCC 528
||| |||| | ||||| || ||||| ||||||| ||| ||||||| |||||| |||||
Sbjct 451 GAATTAGTCG---CTGAGCTGTTCACTAGTGACATAGAAGCATTGCTACAGCGGGTTTCC 507
Query 529 TCTCCTTCCTCCTCGGTTGCAGATCAGATGGAAGCTGCAAAAGAGCTTGCC-CTCCAAAC 587
||| | ||||||| |||||||||||||| ||||||||||||||||| || | ||| ||
Sbjct 508 TCT--T-CCTCCTCTGTTGCAGATCAGATAGAAGCTGCAAAAGAGCT-GCGTCACCAGAC 563
Query 588 CTCGAAATTTG-TCAATGTCCGTGACTTCTTTGTCGCCAAAATCCCTGATTCCATCACCA 646
| ||||||| | ||||| || | |||||||||||| ||||| |||||| ||||||
Sbjct 564 CAAGAAATTTCCT-AATGTTCGGGTCTTCTTTGTCGCTGGAATCCATGATTCTATCACCC 622
Query 647 GGTTGCTCACTCCTCTCTCTGTTTTGGGCGATG-ACGTAGACTCGAATCCCGAGCTTCAA 705
| ||||||| ||| |||||| ||||| ||| | | |||||||| | || ||||||||||
Sbjct 623 GTTTGCTCAGTCCGCTCTCTACTTTGGACGAGGCA-GTAGACTCTAGTCTCGAGCTTCAA 681
Query 706 GAGAATATTATCACATCATTGTTCAACATGTCTACTT-TTGAGCAG-AATAAAACACT-A 762
||||||||| ||||| | ||||||||| | || | || ||||| || ||||||||| | |
Sbjct 682 GAGAATATTGTCACAGCTTTGTTCAACCTCTCGA-TTCTTGAG-AGTAATAAAACAGTGA 739
Query 763 CTTGCTGAAAACCCTCAAGTGATCCCACTGCTTGCAAAGTCTTTGAAGCAGGGGACAGTT 822
||||||||||| || ||||||||| |||||| |||||||||||||||||||||||| |
Sbjct 740 -TTGCTGAAAACTGTCTAGTGATCCCTCTGCTTACAAAGTCTTTGAAGCAGGGGACAGAT 798
Query 823 GTGACACGAAGAAACGCTGCAGCGACTTTAATG-TCACTTGCAGACATTGATTCTAACAA 881
| |||||||||||||||||| ||||||||| | |||||| ||| |||||||||||||||
Sbjct 799 GAGACACGAAGAAACGCTGCTGCGACTTTA-TCATCACTTTCAGCCATTGATTCTAACAA 857
Query 882 GATCATCATAGGGAACTCGGAAGCACTCAAGGCTCTGATAGATCTAATCTTGGACTCGGA 941
|||||| || |||||||||||||| | |||||| |||| ||||| ||| || ||
Sbjct 858 GATCATTATTGGGAACTCGGAAGCGGTAAAGGCTTTGATTGATCTTATCGAAGAG--GG- 914
Query 942 TGACTTATCAGCCACCAATGAAGCTGCTAACGCTAT-TTTAAACCTCTGTTTTGATGAAT 1000
||| || | ||| ||||| ||||| || | || | ||||| ||||||| ||| | | |
Sbjct 915 TGATTTGTTAGCTACCAAAGAAGCCACTTCCACTGTCTTTAA-CCTCTGTATTG-T-ACT 971
Query 1001 CGGAGAACT-GCAAAAAGGCAATCTC-GTTGGGGTTGGCTTC-TGCCGTAACCAAAAATA 1057
||||||| | ||| || | || | ||| ||| ||| ||| | ||||||||| |
Sbjct 972 -GGAGAACAAGGGAAA-GGTTGTTTCAGC-GGGTTTGA-TTCATGCGGCAACCAAAAAGA 1027
Query 1058 TCAAAGCAGGAAGAAATGTGGATGAGTTGTTAGCTGTCTTGGTATTGATCTCTCCACACG 1117
||||||||||||| |||||||||||||||||| || |||||| |||||| ||| |||||
Sbjct 1028 TCAAAGCAGGAAGCAATGTGGATGAGTTGTTATCTCTCTTGGCATTGATATCTACACAC- 1086
Query 1118 AAC-GTGTTGTCGAGGAAATGGATAATGTAGGGGTTATCTATGATCTGTTAAGTATCTTG 1176
||| | | ||| || ||||||||||| ||||| |||||||||||||||| |||||||||
Sbjct 1087 AACCGGGCTGTTGAAGAAATGGATAAACTAGGGTTTATCTATGATCTGTTCAGTATCTTG 1146
Query 1177 AGGAAAACAAGTTCCTTGGTGACTTGTGAGAACGTTGTAGTGATTGTCCACAACATGTAT 1236
||||| | ||| |||| ||||| ||||||||| ||||||||| ||| ||||||||||
Sbjct 1147 AGGAAGCCGAGTAGCTTGCTGACTGGTGAGAACGCTGTAGTGATCGTCTTCAACATGTAT 1206
Query 1237 GTTA-AAAGCAGAGAAAGGTCTATTTTGAAA-TCCCT-GGCAGAAGAGGAGAATCAACAC 1293
| | ||| |||||| ||||| | ||||| | | || |||||||||||||||||||
Sbjct 1207 GACAGAAA-CAGAGACAGGTCCAGACTGAAAGTGG-TAGG-AGAAGAGGAGAATCAACAC 1263
Query 1294 AAGACATTTACAAAGCTTGC-AAGCCAAGAATCAGTTCTTGTGGTGGGGAGAGCACAAGG 1352
||||||||| |||||||| |||| ||| |||||||| || | | | | |||||||||
Sbjct 1264 GGGACATTTACGAAGCTTGCGAAGC-AAGGATCAGTTCGTGCAGCGAGAAAAGCACAAGG 1322
Query 1353 GATTTTACAG-GGTATTAGG-GCATTCGCTGCTGGTAAAGAGACACAGAGGGCATGA 1407
||| |||||| || || | | | ||||| | ||||||||||| ||||||||||||||
Sbjct 1323 GATATTACAGTGG-ATAAAGAG-ATTCGTTACTGGTAAAGAGCCACAGAGGGCATGA 1377
> AT5G18330.1 | Symbols: | ARM repeat superfamily protein | chr5:6068474-6070042
REVERSE LENGTH=1338
Length=1338
Score = 654 bits (354), Expect = 0.0
Identities = 988/1274 (78%), Gaps = 123/1274 (10%)
Strand=Plus/Plus
Query 1 ATGGCGGATTCGACGGCGGACGCGACGGAAACAAACGCAGATACTCTGAGTCTGAGGCGG 60
||||| |||||||||||||| ||| | ||||||||| |||||||| | | |||||
Sbjct 1 ATGGCAGATTCGACGGCGGA--CGA-GTCAACAAACGCTGATACTCT--G--T--GGCGG 51
Query 61 GAGTTGA-AGAAGGTACTGACGGAGAATTTATACG-ACGACGGAGGAGTCAAAGATGGCG 118
||||| | | ||||||||| ||||| | || | | |||||||||||| ||||||| |
Sbjct 52 GAGTT-ACACAAGGTACTGCCGGAG-A-TT-T-GGTACGACGGAGGAGGCAAAGAT--C- 103
Query 119 TTGAGACTGTGAAATCGATTGATGAGGCGATTAGAATCCTGAATTGTCT---GAAAAGAG 175
|||||| | |||||||||||| ||||||||||||| |||||| ||||| ||
Sbjct 104 -----ACTGTG--A--GATTGATGAGGCTATTAGAATCCTGACTTGTCTGAGGAAAATAG 154
Query 176 AATCGAAGAAGCGGAAGCGGGAATCTGATATTTCTCCGGTGGAAGTTCCGAAAGAGTTCA 235
|||||||||| | | |||||||||||| ||||||||||||||||| |||||||| |
Sbjct 155 AATCGAAGAATC-----C-GGAATCTGATATATCTCCGGTGGAAGTTCCAAAAGAGTTTA 208
Query 236 -AGTGTACACTCTCCAAGACGATCATGATCGATCCTTTGATCATTTCTTCTGGGCAGACG 294
| ||||||||||| || | |||||||||||| ||| || |||| ||||||| |||||
Sbjct 209 TA-TGTACACTCTCGAACAAGATCATGATCGAACCTATGCTCATCGCTTCTGGCCAGACT 267
Query 295 TATGAAAAGAGATATATCAC-AGAATGGCTCAACCAT-AACCGTACATGTCCC-AAAACC 351
| ||||||||| |||||| | ||| ||||| || ||| || |||||||| ||| | ||||
Sbjct 268 TTTGAAAAGAGCTATATC-CTAGAGTGGCTGAAGCATGAA-CGTACATG-CCCTAGAACC 324
Query 352 AAAGAACTCCTCT-CTCA-AGTCCGTATGACACCCAACCATTTGATCAATGA-CTTGATT 408
||| || |||| | | || || ||||| ||| |||||||||||||| || || |||
Sbjct 325 AAACAAGTCCTTTAC-CACCGT-TTTATGATACCAAACCATTTGATCAACGAGGTT-ATT 381
Query 409 ACGCAATGGTGTCTTGTTAACAACAAAGTTGATCGGCCAAAACCACAACCATCTGATTTT 468
| | |||||||||| || | |||| |||||||||| || | || |||| |
Sbjct 382 AAGGAATGGTGTCTAATT--C-ACAACTTTGATCGGCC--AA--A-AA-CATC--A---- 426
Query 469 GAAATAGTAGTAACTGAGATGGTCACTGGTGACATCGAACCATTGCTTCAGCGGATTTCC 528
| || | ||| | ||| || ||||||||||| | ||| ||||||||||||| ||||||
Sbjct 427 G--AT-GAAGTCATTGACCTGTTCACTGGTGACCTTGAATCATTGCTTCAGCGTATTTCC 483
Query 529 TCTCCTTCCTCCTCGGTTGCAGATCAGATGGAAGCTGCAAAAGAGCTTGCCCTCCAA-AC 587
||||| | |||||||||| |||||||| ||||||||||||||||||||||| ||| |
Sbjct 484 TCTCC-T--TCCTCGGTTGAAGATCAGACAGAAGCTGCAAAAGAGCTTGCCCT-CAAGGC 539
Query 588 CTCGAAATTTGT-CAATGTCCGTGACTTCTTTGTCGCCAAAATCCCTGATTCCATCACCA 646
| || |||| | || ||| ||| || ||||||||||||||||||||||||||||||||
Sbjct 540 CAAGAGATTT-TCCAGTGTTTGTGTCTACTTTGTCGCCAAAATCCCTGATTCCATCACCA 598
Query 647 GGTTGCTCACTCCTCTCTCTGTTTTGGGCGATGACGTAGACTCGAATCCCGAGCTTCAAG 706
||||||||||||| |||||| ||| || || | ||||||||||| ||| ||| ||
Sbjct 599 GGTTGCTCACTCCGCTCTCTATTT----CG--GA-G--GACTCGAATCCTGAGTTTCTAG 649
Query 707 AGAATATTATCACATCATTGTTCAACATGT-CT--ACTTTTGAGCAGAATAAAACACTAC 763
|||| || ||||| ||||| || ||| | || |||| |||| ||||||||||||||
Sbjct 650 AGAACATCGTCACAGCATTG--CA-CATATTCTCGACTTCTGAGAAGAATAAAACACTAG 706
Query 764 TTGCTGAAAACCCTCAAGTGATCCCACTGCTTGCAAAGTCTTTGAAGCAGGGGACAGTTG 823
||||||||||||||| ||| | || ||||||||||||| | |||||||||||||||||
Sbjct 707 TTGCTGAAAACCCTCTTGTGCTTCCTCTGCTTGCAAAGTATATGAAGCAGGGGACAGTTC 766
Query 824 TGACACGAAGAAACGCTGCAGCGACTTT-AATGTCACTTGCAGACATTGATTCTAACAAG 882
|||| |||| | || ||||||||||| | ||| |||||| || ||| |||||||||||||
Sbjct 767 TGACTCGAATACACTCTGCAGCGACTGTGAAT-TCACTTTCATACACTGATTCTAACAAG 825
Query 883 ATCATCATAGGGAACTCGGAAGCACTCAAGGCTCTGATAGATCTAATCTTGGACTCGGAT 942
|| ||||| || |||||||||| |||||||||||| ||| || ||||| || || |
Sbjct 826 ATTATCATCGGTAACTCGGAAGTACTCAAGGCTCTCATACATGTAATCGAAGAG--GG-T 882
Query 943 GACTT-ATCAGCCACCAATGAAGC-TGCTAACGCTATTT-TAAACCTCTGTTTTGATGAA 999
|| || || |||||||| |||||| | | ||| ||| ||| ||||||| | | ||
Sbjct 883 GA-TTCATTAGCCACCAGTGAAGCCTTTTC-CGCGCTTTCTAA-CCTCTGTCCAG-TAAA 938
Query 1000 TCGGAGAACTGCAAAAAGGCAATCTC-GTTGGGGTTGGCTTC-TGCCGTAACCAAAAATA 1057
||||| | | ||||||| | || | ||| ||| ||| ||| | || |||||| |
Sbjct 939 --GGAGATCAGTGAAAAGGCGGTTTCAGA-GGGTTTGA-TTCGTGCGGCAATCAAAAAGA 994
Query 1058 TCAAAGCAGGAAGAAATGTGGATGA-GTTGTTAGCTGTCTTGGTATT-GATCTCTCCACA 1115
||||||||||||| ||||| | | ||||||| || |||||| ||| | | ||| ||||
Sbjct 995 TCAAAGCAGGAAGCAATGTATCT-ATGTTGTTATCTCTCTTGGCATTTGTT-TCTACACA 1052
Query 1116 CGAACGTGTTG--T-C-GAGGAAATGGATAATGTAGGGGTTATCTATGATCTGTTAAGTA 1171
|||| | | || |||||||||||| ||||| |||||||||||||||| ||||
Sbjct 1053 -GAACCACCAAACTACCGAAGAAATGGATAATCTAGGGCTTATCTATGATCTGTTCAGTA 1111
Query 1172 TCTTGAGGAAAACAAGTTCCTTGGTGACTTG-TGAGAACGTTGTAGTGATTGTCCACAAC 1230
|||||||||| ||| | |||||||| | | |||||||| |||||| || ||| |||||
Sbjct 1112 TCTTGAGGAACTCAAATAGCTTGGTGAAT-GATGAGAACGCTGTAGTCATCGTCTACAAC 1170
Query 1231 ATGTATGTTAAAAG 1244
|| | ||| |||||
Sbjct 1171 AT-T-TGT-AAAAG 1181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69326952645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5