BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg893756

Length=1044
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G49140.1 | Symbols:  | Disease resistance protein (TIR-NBS-L...  76.8    4e-13


> AT5G49140.1 | Symbols:  | Disease resistance protein (TIR-NBS-LRR 
class) family | chr5:19919085-19923415 REVERSE LENGTH=2943
Length=2943

 Score = 76.8 bits (41),  Expect = 4e-13
 Identities = 53/59 (90%), Gaps = 0/59 (0%)
 Strand=Plus/Plus

Query  193  AACTACGCTTCTTCAAGCTGGTGTTTGGATGAGTTAGTGGAAATCATGAAGTGCAAGGA  251
            ||||| ||||||||||||||||||||||||||||| || |||||  | |||||||||||
Sbjct  232  AACTATGCTTCTTCAAGCTGGTGTTTGGATGAGTTGGTTGAAATTTTAAAGTGCAAGGA  290



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 51188595793


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5