BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893757
Length=2706
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18360.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 3133 0.0
AT2G09992.1 | Symbols: | pseudogene of disease-resistance prot... 357 3e-97
AT5G18350.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 117 6e-25
> AT5G18360.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:6080049-6083027 REVERSE LENGTH=2703
Length=2703
Score = 3133 bits (1696), Expect = 0.0
Identities = 2393/2726 (88%), Gaps = 61/2726 (2%)
Strand=Plus/Plus
Query 10 TCTTCATCGTTCTCATTGCAGCCTTGCCATTGGAGACACCATGTGTTCCCAAGCTTCAGC 69
|||||||| || ||||||||| ||||| ||||||||||||||||||| ||||||||||||
Sbjct 10 TCTTCATCTTTGTCATTGCAGTCTTGCAATTGGAGACACCATGTGTTTCCAAGCTTCAGC 69
Query 70 GGCGAAGACGTCCGTAGAACCTTTCTCAGTCACCTTCTGAAGAAATTCCAGC-TAAAGGG 128
||| |||| ||||| |||||||||||||| |||||||| ||| | |||| || | |||||
Sbjct 70 GGCAAAGATGTCCGCAGAACCTTTCTCAGCCACCTTCTCAAGGAGTTCCGGCGT-AAGGG 128
Query 129 AATTCGCACTTTCATGGATAATGATATCGAGAGAGGCCAAATGATCGGTCCAGAGCTCAT 188
||| || |||||||| |||||||||||| ||||| ||||||||||| || | ||||| |
Sbjct 129 AATCCGTACTTTCATAGATAATGATATCAAGAGAAGCCAAATGATCAGTTCTGAGCTTGT 188
Query 189 ACAAGCAATCCGAGAATCTAGGTTTGCGGTTGTAGTATTGTCGAAGACATATGCATCTTC 248
|| ||| ||| ||||||||||| ||||||||||||| |||||| ||| |||||||||||
Sbjct 189 ACGAGCTATCAGAGAATCTAGGATTGCGGTTGTAGTGTTGTCGCGGACCTATGCATCTTC 248
Query 249 AAAG-TGGTGTTTGGATGAGTTGGTGGAAATAAAGGAAGCT-AGCAAGAAGGTCATTCCA 306
||| ||||||||| ||||||||||||| |||||| ||| | ||| ||| | |||| ||
Sbjct 249 -AAGCTGGTGTTTGAATGAGTTGGTGGAGATAAAGAAAG-TAAGCCAGATGATCATGCCG 306
Query 307 ATTTTCTACAATGTGGAGCCATCTGACGTGAAGAATA-TAGGGGGAGAATTTGGAAATGA 365
|||||||| | ||||| |||||||| |||| ||| | | ||||||||||||||| |
Sbjct 307 GTTTTCTACGAGGTGGATCCATCTGATGTGAGGAA-ACGAACGGGAGAATTTGGAAAGGC 365
Query 366 GTTTGAGAAAGCATGT-AAAGAAAAACCAGA-GA--AATTG--G-ATAGATGGAGAGAAG 418
||||||| |||||||| |||| | ||||||| || || || | | | |||||||||||
Sbjct 366 GTTTGAGGAAGCATGTGAAAG-ACAACCAGATGAGGAAGTGAAGCAGAAATGGAGAGAAG 424
Query 419 CCTTGGTCTATGTGGCTGATATAGCCGGCGAGTGTTCTCAAAACTGGGTCAGTGAAGCAG 478
| ||||||||| | ||| ||||||||||||||| |||||||||||||| || ||||||||
Sbjct 425 CATTGGTCTATATAGCTAATATAGCCGGCGAGTCTTCTCAAAACTGGGACAATGAAGCAG 484
Query 479 ATATGATTGAAAATATTGCTATGAGCATTTCAGA-GAAATTGAATTCTACACCATCACGA 537
|| ||||||| || |||||||||||||||||| | | |||||||||||||| |||||||
Sbjct 485 ATCTGATTGACAAGATTGCTATGAGCATTTCATATG-AATTGAATTCTACATTATCACGA 543
Query 538 GATTCCGAAAATCTGGTTGGAATCGACGCTCATATGAGAGAGATGGATTCTCTGTTATTT 597
|||||| | |||||||||||||||||| ||||||||||||| |||||||| |||||| |
Sbjct 544 GATTCCTACAATCTGGTTGGAATCGACAATCATATGAGAGAGCTGGATTCTTTGTTATGT 603
Query 598 TTGGAATCAACTGAAGT-AAAGATGGTGGGGATTTGGGGTCCTGCAGGTATTGGCAAGAC 656
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 604 CTGGAATCAACTGAAGTGAAA-ATGGTGGGGATTTGGGGTCCTGCAGGTATTGGCAAGAC 662
Query 657 AACAATTGCCAGAGCTCTATTCAACCGGCTCTCTGAAAACTTCCAACACACTATTTTTAT 716
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 663 AACAATTGCCAGAGCTTTATTCAACCGGCTATCTGAAAACTTCCAACACACTATTTTTAT 722
Query 717 GGAGAATGTTAAGGGAAGTTATAGGAGAACGGATCTCGATGACTATGGCATGAAGTTGCG 776
|||||||||||||||||||| ||||| |||| ||||||| ||||||| | |||||||
Sbjct 723 GGAGAATGTTAAGGGAAGTTCTAGGACCTCGGAGCTCGATGCCTATGGCTTCCAGTTGCG 782
Query 777 TTTGCAAGAACAGTTTCTGTCTGAAGTTATAGATCATAAGCATATGAAGATACATGATTT 836
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 783 TTTGCAAGAACAGTTTCTGTCTGAAGTTATTGATCATAAGCATATGAAGATACATGATTT 842
Query 837 AGGTTTGGTAAAAGAAAGATTGCAGGATCTGAAAGTTCTTGTTGTTCTTGATGATGTTGA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 AGGTTTGGTAAAAGAAAGATTGCAGGATCTGAAAGTTCTTGTTGTTCTTGATGATGTTGA 902
Query 897 TAAAATAGAGCAACTTGATGCTTTGGTGAAACAATCTCAGTGGTTTGGTTCTGGAAGTAG 956
|||| |||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 903 TAAACTAGAACAACTTGATGCCTTAGTGAAACAATCTCAGTGGTTTGGTTCTGGAAGTAG 962
Query 957 AATCATCGTGACCACGGAAAACAAACAGCTTTTGAGAGCGCATGGGATCAAGCT--CATA 1014
||||| ||||||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 963 GATCATTGTGACCACGGAAAACAAACAGCTATTGAGAGCGCATGGGATCA--CTTGCATA 1020
Query 1015 TATGAAGTTGG-TTTTCCATCTAGAGGTGAATCTCTTCAGATTTTCTGCCTATCCGCATT 1073
||||| ||||| ||||||||||||| |||| ||||||||||||||||||| || |||||
Sbjct 1021 TATGA-GTTGGGTTTTCCATCTAGAAGTGATTCTCTTCAGATTTTCTGCCAATATGCATT 1079
Query 1074 TGGACAAAGCTCTGCACCACATGGTTTTATCAAGCTCGCTACTGAAATAACAAAGCTTGC 1133
|||| | || ||||||||| |||||| |||| |||| |||||||||||||||||||||||
Sbjct 1080 TGGAGAGAGTTCTGCACCAGATGGTTGTATCGAGCTTGCTACTGAAATAACAAAGCTTGC 1139
Query 1134 TGGCTATCTTCCTCTAGCGCTGACGGTTTTGGGGTCATCTCTGCGAGGGATGAACAAAGA 1193
|||||||||||| ||||| || | |||||||||||| |||||||||||||||| ||||||
Sbjct 1140 TGGCTATCTTCCCCTAGCTCTAAAGGTTTTGGGGTCCTCTCTGCGAGGGATGAGCAAAGA 1199
Query 1194 TGAGCAAAAATCAGCATTGCCTCGACTCAGAACCAGTCTCAATGAGGATATAAAGAA-TG 1252
||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||
Sbjct 1200 TGAGCAAAAATCAGCATTGCCTCGACTCAGAACCAGTCTTAATGAGGATATTA-GAAATG 1258
Query 1253 TTTTACGAGTCAGTTATGATAGTTTACATGAGAGGGATAAG-TCTATATTCCTTCACATT 1311
||||||||||| |||||||| || ||||||| | ||||||| || ||||||||||| |||
Sbjct 1259 TTTTACGAGTCGGTTATGATGGTATACATGACAAGGATAAGGTC-ATATTCCTTCATATT 1317
Query 1312 GCGTGTTTATTTAATGGTGAGAATGTTGATTATGTGAAGCAGTTGCTTGCAAGTTCTGGC 1371
|| |||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||
Sbjct 1318 GCTTGTTTATTCAATGGTGAGAACGTTGATTATGTGAAGCAAATACTTGCAAGTTCTGGC 1377
Query 1372 TTGGATGTAA-ACTTTGGACTTGAAGTCCTGACCAATAGATCTCTCATAAACATATCGGG 1430
|||||||| | | ||||| ||| ||||||| |||| ||| ||||||||| |||||||| |
Sbjct 1378 TTGGATGTCACA-TTTGGGCTTCAAGTCCTTACCAGTAGGTCTCTCATACACATATCGAG 1436
Query 1431 ATTCAATCGCACCATTATGATGCACACTTTACTCGAACAATTGGGTCGAGAAGTTGTTTA 1490
|| |||||| || |||| |||||||| ||| || |||||||||||||||||| ||||||
Sbjct 1437 ATGCAATCGTACTATTACGATGCACAATTTGCTAGAACAATTGGGTCGAGAAATTGTTTG 1496
Query 1491 TGAACAATTTATTGTCGAGCCTAGAAAACGTCAATTCTTGGTGGATGCTTCAGATATCTG 1550
||||||| ||||| ||||||| | ||||||||||||||| ||||||||||||| || |
Sbjct 1497 CGAACAATCTATTGCCGAGCCTGGCAAACGTCAATTCTTGATGGATGCTTCAGAGATTTA 1556
Query 1551 TGACGTACTTTTTCATGACAGTGGCGCTCGAGCTGTTTCAGTTTTGGGCATATCTATGGA 1610
||| |||||| | || ||| ||| || ||||||||| | |||||||||| ||||
Sbjct 1557 TGATGTACTTGCTGATAACACTGGTACTGGAGCTGTTT---T---GGGCATATCTTTGGA 1610
Query 1611 CATATCTAAGATCAATGAGTGGTATCTGAACGAA-GAAGCTTTTGCTGGGATGTTTAACC 1669
|||||||||||||||||||| || |||||| ||| || ||||||| ||||||| ||| |
Sbjct 1611 CATATCTAAGATCAATGAGTTGTTTCTGAATGAAAGA-GCTTTTGGTGGGATGCATAATC 1669
Query 1670 TGATGTTTCTCAGATTCTATAAGTCCCCTTCAAGTAAAGATCAACCCGAGCTGAATTATT 1729
|| ||||||| |||||||| |||||| |||| |||||||||||||| ||||| | |||
Sbjct 1670 TGTTGTTTCTAAGATTCTACAAGTCCTCTTCGAGTAAAGATCAACCTGAGCT---TCATT 1726
Query 1730 TACCTCTACGCTTGGATTATTTGCCCCACAAACTTAGGCTGCTGCATTGGGATGCATGCC 1789
|||||| | ||||||||||||| |||| |||||||||||||||||||||||||||| ||
Sbjct 1727 TACCTCGAGGCTTGGATTATTTACCCCGTAAACTTAGGCTGCTGCATTGGGATGCATTCC 1786
Query 1790 CTATGAAATCTATGCC-CATGAGTTTTCGTCCAGAGTTTCTTGTTGTGATCAATATAAGG 1848
| |||| ||| ||||| | |||||||| ||||| |||||||||||||||| || ||||||
Sbjct 1787 CCATGACATCAATGCCTC-TGAGTTTTTGTCCACAGTTTCTTGTTGTGATAAACATAAGG 1845
Query 1849 GAGAGCCAGCTTGAGAAGCTGTGGGAAGGAGCACCACCTCTTAGAAGTCTGAAGT-GTAT 1907
|||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| | ||
Sbjct 1846 GAGAGCCAGCTTGAGAAGCTGTGGGAAGGAACACAACCTCTTAGAAGTCTAAAGCAG-AT 1904
Query 1908 GGATTTGAGTATGTCTGAGAATCTAAAAGAGATTCCAGATCTTTCAGAA-GCTGTAAATA 1966
|||||| |||| |||||||||||||||||||||||| |||||||| ||| || |||||||
Sbjct 1905 GGATTTAAGTAAGTCTGAGAATCTAAAAGAGATTCCTGATCTTTC-GAAAGCGGTAAATA 1963
Query 1967 TCGAAGAACTCTGTCTCAGTTATTGCCGAAGTTTGGTGTTGTTACCTTCCTCAATCAAGA 2026
|||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct 1964 TCGAGGAACTCTGTCTCAGTTATTGTGGAAGTTTGGTGATGTTACCTTCCTCGATCAAGA 2023
Query 2027 ACCTTAACAAACTGGTTGTTCTCGACATGACGTACTGCTCAAATCTGGAGTCTTTTCCGA 2086
|||| |||||| |||||||||| ||||||| ||| |||||||| || ||| || |||
Sbjct 2024 ACCTCAACAAATTGGTTGTTCTTGACATGAAGTATTGCTCAAAGCTAGAGA-TTATCCCC 2082
Query 2087 -GCAATATCAAATTGGAATCTCTCAGCATCCTCAACCTCGATAGATGCTCACGATTGGAA 2145
||||||| | || || || || ||||||||||| || ||| ||||||||||||||||
Sbjct 2083 TGCAATATGGACTTAGAGTCCCTTAGCATCCTCAATCTTGATGGATGCTCACGATTGGAG 2142
Query 2146 AGTTTTCCAGAAATTTCTTCGAATATTGGATATCTCTCTCTATCAGAAACTTCAATA-AA 2204
||||||||||||||||||||||| ||||||| ||||||||| ||||||||| ||||| ||
Sbjct 2143 AGTTTTCCAGAAATTTCTTCGAAGATTGGATTTCTCTCTCTGTCAGAAACTGCAATAGAA 2202
Query 2205 -AAATGTTCCCGCAACAGTCGCGTCTTGGCCATATCTGGAAGCATTGGACATGTCAGGCT 2263
|||| | ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2203 GAAAT-T-CCCACAACAGTCGCGTCTTGGCCATGTCTGGCAGCATTGGACATGTCAGGCT 2260
Query 2264 GCAGGTACCTCGATACATTTCCATTTCTGCCGGAAACTATAAAATGGTTGGATCTGAGCA 2323
||| | ||||| | || ||||||| ||| || |||||||| ||||||||||| ||||||
Sbjct 2261 GCAAGAACCTCAAGACGTTTCCATGTCTTCCAAAAACTATAGAATGGTTGGATTTGAGCA 2320
Query 2324 GGAAAGAGATCAAAGAAGTCCCCTTATGGATCGAGGATCTAGTTCT--GCTCAAGAAACT 2381
||| ||||||| ||||||| || || |||||||| | || | | |||||| |||||
Sbjct 2321 GGACAGAGATCGAAGAAGTTCCTTTGTGGATCGATAAACTC-T-CAAAGCTCAATAAACT 2378
Query 2382 ATTGATGAACAGCTGCATGGAGCTAAGAAGCATCTCTTCTGGGATTTGTA-GACTGGAAC 2440
||||||||||||||||||| ||||||||||||||||||||||||| | || | |||||||
Sbjct 2379 ATTGATGAACAGCTGCATGAAGCTAAGAAGCATCTCTTCTGGGATCTCTACG-CTGGAAC 2437
Query 2441 ACATCGAAACACTAGATTTCTTGGGTTGCAAGAATGTTGTGAGCTTTCCACTAGAGATCT 2500
| ||| ||||||||||||| ||||| ||||||||| ||||||||||||| ||||||| |
Sbjct 2438 ATATCAAAACACTAGATTTTTTGGGGTGCAAGAATATTGTGAGCTTTCCTGTAGAGATAT 2497
Query 2501 ACGAGAGCTCTCGGTTCTGTCATAATCTGGTGATGGAGATGAGAAACATTCAAAACCCTG 2560
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2498 TCGAGAGCTCTCGGTTCTGTCATAATCTGGTGATGGAGATGAGAAACATTCAAAACCCTG 2557
Query 2561 ATCTTCCTCGACCATTCTATTTCAAGAATAACTATATCGACACTATTCCAGATTGTATTA 2620
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 2558 ATCTTCCTCGACCATTTTATTTCAAGAACAACTATATTGACACTATTCCAGATTGTATTA 2617
Query 2621 CACGTCACTGCAAGCTGCCTTTTCTGAATTCATCAGGATCAATCTCCAGCAATATAGAGA 2680
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2618 CACGTCACTGCAAGCTGCCTTTTCTGAATTCATCAGGATCAATCTCCAGCAAGATAGAGA 2677
Query 2681 ATGATTTCATCTGGTTCGACGAATAA 2706
||||||||||||||||||| |||||
Sbjct 2678 ATGATTTCATCTGGTTCGATAAATAA 2703
> AT2G09992.1 | Symbols: | pseudogene of disease-resistance protein
| chr2:3782609-3782840 FORWARD LENGTH=232
Length=232
Score = 357 bits (193), Expect = 3e-97
Identities = 221/234 (94%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 41 GGAGACACCATGTGTTCCCAAGCTTCAGC-GGCGAAGACGTCCGTAGAACCTTTCTCAGT 99
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1 GGAGACACCATGTGTTCCCAAGCTTCAGCGGGC-AAGACGTCCGTAGAACCTTTCTCAGT 59
Query 100 CACCTTCTGAAGAAATTCCAGCTA-AAGGGAATTCGCACTTTCATGGATAATGATATCGA 158
|||||||||||| |||||| | | |||||||| ||||| ||||||||||||||||||||
Sbjct 60 CACCTTCTGAAGGAATTCC-GGAACAAGGGAATACGCACGTTCATGGATAATGATATCGA 118
Query 159 GAGAGGCCAAATGATCGGTCCAGAGCTCATACAAGCAATCCGAGAATCTAGGTTTGCGGT 218
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 119 GAGAGGCCAAATGATCAGTCCCGAGCTCATACAAGCAATCCGAGAATCTAGGTTTGCGGT 178
Query 219 TGTAGTATTGTCGAAGACATATGCATCTTCAAAGTGGTGTTTGGATGAGTTGGT 272
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 179 TGTAGTGTTGTCGAAGACATATGCATCTTCAAAGTAGTGTTTGGATGAGTTGGT 232
> AT5G18350.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:6074069-6078569 REVERSE LENGTH=3738
Length=3738
Score = 117 bits (63), Expect = 6e-25
Identities = 71/75 (95%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 2610 AGATTGTATTACACGTCACTGCAAGCTGCCTTTTCTGAATTCATCAGGATCAATCTCCAG 2669
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3664 AGATTGTATCACACGTCACTGCAAGCTGCCTTTTCTGAATTTATCAGGATCAATCTCCAG 3723
Query 2670 CAATATAGAGAATGA 2684
||| | |||||||||
Sbjct 3724 CAAGAAAGAGAATGA 3738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134397240297
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5