BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893764
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18430.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1607 0.0
> AT5G18430.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr5:6110255-6112029 REVERSE LENGTH=1292
Length=1292
Score = 1607 bits (870), Expect = 0.0
Identities = 983/1039 (95%), Gaps = 2/1039 (0%)
Strand=Plus/Plus
Query 1 ATGTCTAGTCTGACCA-TGGTCGAGGCACGTGCTTTTTTCGTGTTCGGCGACTCGCTTGT 59
|||||| ||| || | |||| |||| ||||||||||||||||||||| |||||||| ||
Sbjct 147 ATGTCTGGTCCGA-TAGTGGTGGAGGGACGTGCTTTTTTCGTGTTCGGTGACTCGCTCGT 205
Query 60 CGACAGTGGGAACAACAACTATCTGGTGACGACTGCACGTGCCGACTCTCTGCCTTATGG 119
||||||||| |||||||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 206 CGACAGTGGCAACAACAACTATCTGGTGACAACTGCACGTGCCGACTCTCCACCGTATGG 265
Query 120 AATCGATTTTCCTACTCGGAGACCAACCGGCCGGTTTTCCAACGGTCTAAACATACCAGA 179
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 266 AATCGATTTTCCAACTCGGAGACCAACCGGCCGGTTTTCCAACGGTCTTAACATTCCAGA 325
Query 180 TCTTATAAGTGAGGCAATCGGCAACGAAGAGCCACCGTTACCTTACCTTAGTCCAGAGCT 239
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 326 TCTTATCAGTGAGGCAATCGGTAACGAAGAGCCACCGTTACCTTACCTTAGTCCAGAGCT 385
Query 240 AAGGGGCCGAAGGCTTCTTAACGGTGCCAATTTCGCCTCGGCCGGTATCGGAATTCTCAA 299
||||||||| || |||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 386 AAGGGGCCGGAGTCTTCTTAACGGTGCTAATTTCGCCTCCGCTGGTATCGGAATTCTCAA 445
Query 300 CGATACCGGATTTCAATTCATCAACATTATAAGAATGTACCAACAACTCGATTACTTCCA 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 TGATACCGGATTTCAATTCATCAACATTATAAGAATGTACCAACAACTCGATTACTTCCA 505
Query 360 ACAATACCAACAACGTGTGAGTCGCTTGATAGGGAAACCACAAACTCAGCGGCTCGTGAG 419
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 506 ACAATACCAACAACGTGTGAGTCGCTTGATTGGGAAACCGCAAACTCAGCGGCTCGTGAG 565
Query 420 TCAAGCACTTGTATTAATCACGGTCGGTGGAAACGATTTCGTGAACAACTATTTCTTGTT 479
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 566 TCAAGCGCTTGTATTAATCACGGTCGGTGGAAACGATTTTGTGAACAACTATTTCTTGTT 625
Query 480 TCCATATTCCGCTAGATCACGCCAATTCTCTCTACCGGATTACGTCCGACTCCTAATTTC 539
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 626 TCCATATTCCGCTAGATCACGCCAATTCACTCTACCGGATTACGTCCGACTCCTAATTTC 685
Query 540 TGAATACaaaaaaaTACTACTGAGATTAAATTCACTTGGAGTTGGTCGAGTTCTAGTGAC 599
||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 686 TGAATACAAAAAAATACTATTGAGGTTAAATTCACTTGGAGTGGGTCGAGTTCTAGTGAC 745
Query 600 CGGAGCTGGACCACTAGGATGTGCACCGGCCGAACTGGCGAGATCAGGCACGTCGAATGG 659
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 746 AGGAGCTGGACCACTAGGATGTGCACCGGCCGAACTGGCGAGATCAGGTACGTCGAATGG 805
Query 660 GAGATGCTCGGCCGAGCTACAACGAGCTGCGTCTTTATATGATCCACAGCTACTTCAAAT 719
||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct 806 AAGATGCTCGGCCGAGCTACAACGAGCTGCATCTCTATATGATCCTCAGCTACTTCAAAT 865
Query 720 GATAAATGCACTTAACAAAAAGATTGGAAGAAATGTGTTTATTGCTGCAAACACTAACCA 779
|||||||| |||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 866 GATAAATGAACTTAACAAAAAAATTGGGAGAAATGTGTTTATTGCTGCTAACACTAACCA 925
Query 780 AATGCAAGAGGATTTTCTAAGCACTCCACGAAGATATGGATTTATAACGTCGAAGGTTGC 839
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 926 AATGCAAGAGGATTTTCTAAGCACTCCACGAAGATATGGATTTGTAACATCGAAGGTTGC 985
Query 840 TTGTTGCGGACAAGGGCCGTACAATGGGATGGGTTTGTGTACAGTACTATCGAATTTGTG 899
|||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||
Sbjct 986 TTGTTGCGGACAAGGGCCGTACAATGGGATGGGTTTGTGTACGGTTCTATCAAACTTGTG 1045
Query 900 TCCGAACCGAGAGCTATACGTGTTTTGGGACGCGTTTCATCCGACTGAGAAAGCAAACCG 959
||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1046 TCCGAACCGTGAGTTATACGTCTTTTGGGATGCGTTTCATCCGACTGAGAAAGCAAACCG 1105
Query 960 CATGATAGTTCGTCATATCTTGACCGGTACCTCCAAGTATATGAACCCCATGAACCTTAG 1019
||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1106 CATGATAGTCCGACATATCTTGACCGGTACCACCAAGTATATGAACCCCATGAACCTTAG 1165
Query 1020 CTCTGCTCTTGCCCTATGA 1038
|||||||||||||||||||
Sbjct 1166 CTCTGCTCTTGCCCTATGA 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5