BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893775
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18525.1 | Symbols: | protein serine/threonine kinases;prot... 1360 0.0
> AT5G18525.1 | Symbols: | protein serine/threonine kinases;protein
tyrosine kinases;ATP binding;protein kinases | chr5:6146743-6153742
REVERSE LENGTH=5193
Length=5193
Score = 1360 bits (736), Expect = 0.0
Identities = 809/845 (96%), Gaps = 2/845 (0%)
Strand=Plus/Plus
Query 1 ATGCAGAAAAATCTGGAGTTGCGGGTCCTTCAGTTTGCTGCAACTTCCTTGATGTCAATT 60
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3262 ATGCAGAAAAATCTAGAGTTGCGGGTCCTTCAGTTTGCTGCAACTTCCCTGATGTCAATT 3321
Query 61 TGCGAGCGGATTGGACAAGAGATGACTGCATTGCATGTTCTTCCGCAGTTGAAGGAGCTT 120
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3322 TGCCAGCGGATTGGACAAGAAATGACTGCATTGCATGTTCTTCCGCAGTTGAAGGAGCTT 3381
Query 121 TTTGATGAGTTTGCTTTCTCTGAGAAAAGTACAGATGCATCTGACTCTTTAAGCTGGAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3382 TTTGATGAGTTTGCTTTCTCTGAGAAAAGTACAGATGCATCTGACTCTTTAAGCTGGAAG 3441
Query 181 ATCAGGACTGCCGAACAAAACTTCCATCCAGAATCTCCAATCAAAAACCGTATGGATCTT 240
|| ||||||||||||||||| || |||||||||||||||||||||| |||||||||||||
Sbjct 3442 ATTAGGACTGCCGAACAAAAATTTCATCCAGAATCTCCAATCAAAAGCCGTATGGATCTT 3501
Query 241 GTGTTGCTTCTCTATCCTTCTTTTGCGTCACTTCTTGGTATGGAGAAATTACGTCAGAAT 300
|||||||| |||||||||||||| || |||||||||||||||||||||||||| ||| |
Sbjct 3502 GTGTTGCTCCTCTATCCTTCTTTCGCCTCACTTCTTGGTATGGAGAAATTACGCCAGGGT 3561
Query 301 TGTCCAACCTGGCTACTCCTTGAGCAATATCTGCTAAAGCATCATAACTGGAAGTGGGAA 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3562 TGTCCAACCTGGCTACTCCTTGAGCAGTATCTGCTAAAGCATCATAACTGGAAGTGGGAA 3621
Query 361 TACACAGGTCGATCTTCTAGATACAGTATGGAAGCAAGGCCTGTGTTAAA-CAAGGGCCC 419
||||| || ||||||||| |||||| |||||||||||||||||| ||||| || ||||||
Sbjct 3622 TACACCGGACGATCTTCTCGATACAATATGGAAGCAAGGCCTGTATTAAAACA-GGGCCC 3680
Query 420 TGCATCTAAGCACACTCCTAAGATGTTGCTCAATGGATCTGGACGGTCGGTTCCCCAGTT 479
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 3681 TGCATCTAAGCACACTCCTAAGGTGTTGCTTAATGGATCTGGACGGTCGGTTCCCCAGTC 3740
Query 480 GCAGGGGTTAAGAAATTCCAATCACTTAAAACCTCATATACATGTCCCAGTTGAAGGACA 539
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3741 GCAGGGGTTAAGAAATTCCAATCACTTAAAACTTCATATACATGTCCCAGTTGAAGGACA 3800
Query 540 AGAAGCAGTCCTAAACCCTTTGGTGCATGAACCCTGGTCATGGTTTCCTAGTCCAGTAGC 599
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3801 AGAAGCAGTTCTAAACCCTTTGGTGCATGAACCCTGGTCATGGTTTCCTAGTCCAGTAAC 3860
Query 600 TTGTTGGGATGGGATTGACATTGGGCGTTTTGGAAACCCCAAAGATGAGCATCGATTGAA 659
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 3861 TTGTTGGGATGGGCTTGACATTGGGCGTTTTGGAAACCCCAAAGATGAGAATCGATGGAA 3920
Query 660 AATTAGAGCATCTGTTTTGTCTTCTGTGCGTGCCTATCATGGAGCTCTAAGATCTTTAGT 719
|||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||
Sbjct 3921 AATTAGAGCATCTGTTTTGTCTTCTGCGCGGGCCCATCATGGAGCTCTAAGATCTTTAGT 3980
Query 720 GGTTTCTGAAGATGAGTGTACAGTTTTCGCTTCAGGAATTGATCCAGGGTTTAAGGGAAG 779
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3981 GGTTTCTGAAGATGAGTGTACAGTTTTCACTTCAGGAATTGATCCAGGGTTTAAGGGAAG 4040
Query 780 TGTTCAGAAGTGGGAACTAGCAAGCTTAAGTTGTGTATCTAGTTATCATGCACATGAAGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 4041 TGTTCAGAAGTGGGAACTAGCAAGCTTAAGTTGTGTATCTAGTTATCATGCCCATGAAGA 4100
Query 840 GGTTG 844
|||||
Sbjct 4101 GGTTG 4105
Score = 952 bits (515), Expect = 0.0
Identities = 553/571 (97%), Gaps = 3/571 (1%)
Strand=Plus/Plus
Query 957 AGGAGAACCTATTGAATCTGGATTCACTTCTCTCGTATCTGCTCTTTGTTCAGGAGGGTC 1016
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4437 AGGAGAAGCTATTGAATCTGGATTCACTTCTCTCGTATCTGCTCTTTGTTCAGGAGGGTC 4496
Query 1017 TCAAACAAAACATGGAGACGGAGCTTCAGTATCACCTTCTTGGATTGCAGCTGGTTTTAG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4497 TCAAACAAAACATGGAGACGGAGCTTCAGTATCACCTTCTTGGATTGCAGCTGGTTTTAG 4556
Query 1077 TTCTGGCCAGTGTAGGCTATTTGACTTGAGGGAAAATGGTTTTATGTCCTCCTGGAGAGC 1136
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 4557 TTCTGGCCAGTGTAGGCTATTTGACTTGAGGGAAAATGGTTTTATTTCCTCCTGGAGAGC 4616
Query 1137 TCACGACGGATACGTGACAAAGTTAGTGGCACCTGAGAGCCATTTACTTGTTTCCAGCTC 1196
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 4617 TCACGACGGATACGTGACAAAGTTAGTGGCACCTGAGAGTCATTTACTTGTTTCCAGCTC 4676
Query 1197 TCTTGACAAAACTTTACGGATCTGGGACTTGAGGAAGAGCTGGACACCACAGCCTTTTGT 1256
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 4677 TCTTGACAAAACTTTACGGATCTGGGACTTAAGGAAGAGCTGGACACCACAGCCTTTTGT 4736
Query 1257 TGTCAAAGGACACAATGACGGTGTTTCCGATTTCTCCATCTGGGGCAAGGACGTTATCTC 1316
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 4737 TGTCAAAGGACACAATGACGGTGTTTCCGGTTTCTCCATCTGGGGCAAGGACGTTATCTC 4796
Query 1317 TATCTCAAGAAATAACATCGGGATTTTCTCACTGTCAAATTTTCAAGACGAGGAGGAGCA 1376
||||||||||| ||||||||||||||||||||| |||| | |||||| |||||||||||
Sbjct 4797 CATCTCAAGAAACAACATCGGGATTTTCTCACTGGCAAAGTCTCAAGATGAGGAGGAGCA 4856
Query 1377 ACGGCAGCAGCAGCGGATTATACCACAGAAACTGTATATGGCAGAGAAGGGAGGAAGAGT 1436
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4857 AC---AGCAGCAGCGGATTATACCACAGAAACTGTATATGGCAGAGAAGGGAGGAAGAGT 4913
Query 1437 CAAGTCGGATTTATCAACCATTTGTGTTTTACCATTCTCGAGATTGTTCATCGTTGGAGC 1496
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 4914 AAAGTCGGATTTATCGACCATTTGTGTTTTACCATTTTCGAGATTGTTCATCGTTGGAGC 4973
Query 1497 ACATGATGGTTACTTGAGAATCTGTTGTTGA 1527
|||||||||| ||||||||||||||||||||
Sbjct 4974 ACATGATGGTCACTTGAGAATCTGTTGTTGA 5004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75351018045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5