BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893776
Length=2742
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18525.1 | Symbols: | protein serine/threonine kinases;prot... 4172 0.0
> AT5G18525.1 | Symbols: | protein serine/threonine kinases;protein
tyrosine kinases;ATP binding;protein kinases | chr5:6146743-6153742
REVERSE LENGTH=5193
Length=5193
Score = 4172 bits (2259), Expect = 0.0
Identities = 2530/2661 (95%), Gaps = 18/2661 (1%)
Strand=Plus/Plus
Query 1 ATGAGAGGTGAAGCA-AGTGACCTTTGCTTCGATTGCCTCGATCAACGTATCAACTCTGA 59
||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 85 ATGAGAGGTGAAG-ATAGTGACCTTTGCTTCGATTGTCTCGATCAACGTATCAACTCTGA 143
Query 60 CTTCTCCGACCAGATCGTCTTCGCTTACGGTGTCTCCGATTCGCCGCTACCTTTTGGATC 119
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 144 CTTCTCCGATCAGATCGTCTTCTCTTACGGTGTCTCCGATTCGCCGCTACCTTTTGGATC 203
Query 120 TTCCGCCGTCGTTAAGGTTTCTGACTCTAGCGAGGAATTTTCTGCTTC---TTCTTCTTG 176
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 204 CTCCGCCGTCGTTAAGGTTTCTGATTCTAGCGAGGAATTTTCTGCTTCTTGTTCTTCTTG 263
Query 177 TGAATCCACTTCGTCTCAGTTCATTTTGGAGTATCTCCGGAAAGAAGAACATGGTTGCTT 236
|||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 264 TGAATCCACTTCTTCTCAGTTCATTTTGGAGTATCTCCGGAAGGACGAACATGGCTGCTT 323
Query 237 AGCTAACTACGTCGATAGATGTGTTGTT-GGGAATCGAGAGGGTGGGAATTCAAACGATG 295
|||||| |||||||| | || ||||||| || ||||||||||| |||||||||||||
Sbjct 324 AGCTAAATACGTCGACAAATTTGTTGTTAAGG-ATCGAGAGGGT---AATTCAAACGATG 379
Query 296 CTGTTGAATCTGATGAGTATTTGGATTGTTCATCCAGTGGCTCTCAGGTTATTGAAGATG 355
|||||||||||||||||| ||||||||||||| ||||||||||||| | || || | | |
Sbjct 380 CTGTTGAATCTGATGAGTGTTTGGATTGTTCAACCAGTGGCTCTCAAGCTACTG-A-A-G 436
Query 356 ATGATGACACAGAGAACATTACTTGTGGAAGTGTTACTTGCAAGCATTCAGGTAGTTTTT 415
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 437 ATGATGACACAGAGAATATTACTTGTGGAAGTGTTACTTGCGAGCATTCAGGTAGTTTTT 496
Query 416 CATGTTGGAGAACTATAGCTGCACTTTTACCAATTGCTCAGATTAGCAAATGTTCTGCAT 475
|||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 497 CATGTTGGAGAACTGTAGCTGCACTTTTACCAATCGCTCAGATTAGAAAATGTTCTGCAT 556
Query 476 CTGAACTTCAAAAGCTTTCTTTTAGTTTCCTTTATGATTGTCCAGAAGATCAAATTTTAG 535
||||||||||||||||| ||| |||||||| |||||| ||||||||||||||||||||||
Sbjct 557 CTGAACTTCAAAAGCTTGCTTCTAGTTTCCATTATGAGTGTCCAGAAGATCAAATTTTAG 616
Query 536 CCTCTTTACATCGCCTGATTGATGGAAAGTCATCTGGGCAAGCAACCCATAGTTTCC--T 593
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 617 CCTCTTTACATCGCCTGATTGATGGAAAGTCATCTGGACAAGCAACCCATAGTTTCCTTT 676
Query 594 -TCGTCTTCTTGGGTTACCGTTGTCAGAGGAGAAAAGAAAGCTTCAATGTTTTAGGCATC 652
|| |||||||||||||||||||| |||||| ||||| ||||||| |||| | |||||||
Sbjct 677 GTCTTCTTCTTGGGTTACCGTTGTTAGAGGAAAAAAGCAAGCTTCGATGTCTCAGGCATC 736
Query 653 CAAATCTATCACCGGTCTTAGGACTTCTGACATCATCTGATTGTTTGGTCTCTGTGCTCC 712
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 737 CAAATCTATCACCGGTCCTAGGACTTCTGACATCATCTGATTGTTTGGTCTCAGTGCTCC 796
Query 713 CCAAAGCCCCGTATACATTGGAAAATATTCTTC-ACTACAGCCCCTGTGCTATAAAGTCA 771
|||||||||| ||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 797 CCAAAGCCCCTTATACATTGGAAAATATTC-TCTACTACAGCCCCAGTGCTATAAAGTCA 855
Query 772 GAATGGCATAGGAATTTTATGATATATCAGCTATTGTCTGGGTTAGCTCACTTGCATGGG 831
||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 856 GAATGGCATAGAAATTTTATAATATATCAGCTATTGTCTGCGTTAGCTCACTTGCATGGG 915
Query 832 TTGAGGGTTTCGCATGGGAACATTTGTCCGTCAAGCATATTGTTGTCTGATTCATTATGG 891
|||| |||||| |||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct 916 TTGAAGGTTTCACATGGGGACATTCGTCCGTCAAACATATTGTTGTCTGATTCATTATGG 975
Query 892 AGTTGGTTAAAGATCTATAGCAAGCCTGATTTAGGTTCTGGAGATGCCGATTCATCTGTT 951
|||||||||| |||||||||||| |||||||||||||||| ||||||| ||||||||| |
Sbjct 976 AGTTGGTTAACGATCTATAGCAAACCTGATTTAGGTTCTGTAGATGCCAATTCATCTGCT 1035
Query 952 TCAAGAAGAAGGTGGTGTGTTGAGGATTGTTATTCGTATGGCCTTTATGCTGATCTTAAA 1011
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1036 TCAAGAAGAAGGTGGTGTGTTGAGGGTTGTTATTCTTATGGCCTTTATGCTGATCTTAAA 1095
Query 1012 ATTTCTTCACATTTGGACTGGCAGACTCACTTGGATAAATGGTGGAAGGGAGAGCTAAGC 1071
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1096 ATTTCTTCACATTTGGACTGGCAGACTCACTTTGATAAATGGTGGAAGGGAGAGCTAAGC 1155
Query 1072 AATTTTGAGTATTTACTCGTCTTAAACAAACTAGCAGGTCGAAGGTGGGGGGACCACACA 1131
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 AATTTTGAATATTTACTCGTCTTAAACAAACTAGCAGGTCGAAGGTGGGGGGACCACACA 1215
Query 1132 TTTCATCCGGTAATGCCATGGGTCATAGATTTCAGCAAGAAACCTGAAAATGATAGTGAC 1191
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1216 TTTCATCCGGTAATGCCATGGGTCATAGATTTCAGCAAAAAACCTGAAAATGATAGTGAT 1275
Query 1192 TCAGGATGGCGTGATTTAAGAAAAAGCAAATGGAGATTGGCAAAAGGAGATGAACAACTA 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1276 TCAGGATGGCGTGATTTAAGAAAAAGCAAATGGAGATTGGCAAAAGGAGATGAACAATTA 1335
Query 1252 GATTTCACCTATTCGACATTTGAATTTCCGCATCATGTTTCAGATGAATGTCTGTCTGAG 1311
||||| ||||| || ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1336 GATTTTACCTACTCAACATTTGAATTTCCGCATCATGTATCAGATGAATGTCTTTCTGAG 1395
Query 1312 CTGGCTGTTTGCAGCTACAAAGCAAGGAGACTGCCACTGAGTGTCCTGCGAAAGGCAGTT 1371
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1396 CTGGCTGTTTGCAGCTACAAAGCAAGAAGACTGCCACTGAGTGTCCTGCGAAAGGCAGTT 1455
Query 1372 AGGTCGGTGTATGAACCTAATGAGTATCCCTCTGACATGCAAAGGCTTTATGATTGGACC 1431
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1456 CGGTCGGTGTATGAGCCTAATGAATATCCCTCTGACATGCAAAGGCTTTATGATTGGACC 1515
Query 1432 CCTGACGAGTGCATCCCTGAGTTTTACTGCGATCCCCGCATCTTTTGCTCCCTTCATCCT 1491
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1516 CCTGACGAGTGCATCCCTGAGTTTTACTGTGATCCCCGCATCTTTTGCTCCCTTCATCCT 1575
Query 1492 AGTATGTCTGATTTGGCTGTACCTCCATGGGCAAACAGCCCCGAGGAGTTCATTAGATTG 1551
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1576 AGTATGTCTGATTTGGCTGTACCTCCATGGGCAAGCAGCCCCGATGAGTTCATTAGATTG 1635
Query 1552 CATCGAGATGCCCTGGAAAGCCCTCATGTTTCAACTCTAATACATCACTGGATTGATATT 1611
||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1636 CATCGAGATGCTCTGGAAAGCCCCCATGTTTCATCTCTAATACATCACTGGATTGATATT 1695
Query 1612 ATTTTTGGTTACAAAATGTCAGGAGAGGCTGCTATTACTGCAAAGAATGTGATGTTGTCT 1671
| |||||||||||||||||||||| | |||||||||||||| |||||||| |||||||||
Sbjct 1696 ACTTTTGGTTACAAAATGTCAGGACATGCTGCTATTACTGCGAAGAATGTTATGTTGTCT 1755
Query 1672 TCATCTGAGCCCACAGTACCGAGGTCAGTTGGACGCCGTCAACTCTTTTTCCGGCCTCAT 1731
|||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1756 TCATCTGAACCCACAGTACCGAGGTCAGTTGGACGTCGCCAACTCTTTTTTCGGCCTCAT 1815
Query 1732 CCGGTGCGCCTTGGTTTCTCCCGCGAGAAGGAACAAAGTAGAAATGAACTAGAGATGCAT 1791
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1816 CCGGTGCGCCTTGGTTTCTCCCGAGAGAAGGAACAAAGTAGAAATGAACTAGAAATGCAT 1875
Query 1792 ACATTTCATGGCTTTGGTGTGGACAACAAGAGGTCCGTCATTCTCCAAGCTGATGAGTAT 1851
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1876 ACATTCCATGGCTTTGGTGTGGACAACAAGAGGTCCGTCATTCTCCTAGCTGATGAGTAT 1935
Query 1852 CTGGAAGAAACTGAAGAGGCATCTGCATTTTCTGATCATGCAGCACATCTAAGTCCAAAG 1911
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1936 CTGGAAGAAACTGAAGAGGCATCTGCATTTTCTGATCATGCAACACATCTATGTCCAAAG 1995
Query 1912 TATCACCTTCATGAAAACCTGGTTGAGTCTCCTTTGCATGTATCTTACAGCGAAAACACT 1971
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1996 TATCACCTTCGTGAAAACCTGGTTGAGTCTCCTTTGCATGTATCTTACAGTGAAAACACT 2055
Query 1972 AAAAAAGTAAATACTAGTCTCCCTGGAACTTCAAAAAACAAAGGTTTATCATCAAGGATA 2031
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2056 AAGAAAGTAAATACTAGTCTCCCTGGAACTTCAAAAAACAAAGGTTTATCATCAAGGATA 2115
Query 2032 AGTTTGAATTATCTTTTGGAGCATATGGAGGTGAGAGACGAGGCATCGACTGAACTTCAG 2091
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 2116 AGTTTGAATTATCTTTTAGAGCATATGGAGGTGAGAGATGAAGCATCGACTGAACTTCAG 2175
Query 2092 GAGTTGTTACAATGGCGGCAAGATTTCTGCACAGGAAACTTTTCCAAGGACATTGCAGGG 2151
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 2176 GAGTTGTTACAATGGCGGCAAGATTTCTGCACAGGAAACATTTCCAAGGACATTGCTGGG 2235
Query 2152 GATATTTTTTCTATTGGCTGTGTCCTGGCAGAACTTTATTTGATGAAGCCGCTATTCAAC 2211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2236 GATATTTTTTCTATTGGCTGTGTCCTGGCAGAACTTTATTTGATGAAGCCGCTATTCAAC 2295
Query 2212 TCAGTGTCTTTGGCTAATTATTTAGAAGGTGGTGACTTACCTGAATTGATCAAGGAACTT 2271
|||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 2296 TCAGTGTCTTTGGCTACTTATTTAGAAGGTGGTGACTTACCTGAACTGATCAAAGAACTT 2355
Query 2272 CCTCCTCCTACTCAGGTACTTGTCGAAGCATGTGTTGAACAAGATTGGAGAAGGAGGCCC 2331
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2356 CCTCCTCCTACTCAGGTAATTGTCGAAGCATGTATTGAACAAGATTGGAGAAGGAGGCCC 2415
Query 2332 TCAGCAAAGAGTCTTTTGGACTCTCCGTATTTCTCAGCTACAGTGAGGTCAGCTCACTTG 2391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2416 TCAGCAAAGAGTCTTTTGGACTCTCCGTATTTCTCAGCTACAGTGAGGTCAGCTCACTTG 2475
Query 2392 TTTGCTGCTCCACTGCACCTTTTGGCTAAAGGTCAAACACGCTTGTGTTATGCTGCAAGT 2451
|||||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 2476 TTTGCTGCTCCACTTCAACTTTTGGCCAAAGGTCAAACACGCTTGTGTTATGCAGCAAGT 2535
Query 2452 TTTGCCAAACAGGGAGTCCTGAAAGCAATGGGAACATTTGTGGCAGAGATGTGTGCTGTG 2511
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 2536 TTTGCCAAACAGGGAGTCTTGAAAGTAATGGGAACATTTGTGGCAGAGATGTGTGCTGTG 2595
Query 2512 TACTGTTTGCCACTGGTCACAACACCTTTATCTGACGACGAGTGTGAATTGGCTTATGTA 2571
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 2596 TACTGTTTGCCACTGGTCACCACACCTTTATCTGAGGACGAGTGTGAATTGGCTTATGTA 2655
Query 2572 CTTCTCAAGGAATTTACAAAATCTTTGACACCAATGGCTGTGCAGAGACTTATCTTACCT 2631
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 2656 CTTCTCAAGGAATTTACAAAATCTTTGACACCAATGGCTGTGCAGAGACTTGTCTTGCCT 2715
Query 2632 TCTATCCAGAAGATCTTACTG 2652
|||||||||||||||||||||
Sbjct 2716 TCTATCCAGAAGATCTTACTG 2736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136203250245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5