BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg893801

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing fac...   224    7e-58


> AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing factor 
28 | chr5:6268718-6271325 REVERSE LENGTH=1085
Length=1085

 Score =  224 bits (121),  Expect = 7e-58
 Identities = 161/180 (89%), Gaps = 3/180 (2%)
 Strand=Plus/Plus

Query  1    ATGGCTAGAGCTAGGAGCCGGAGCAGAAGCTATAGTCCCCGTCTTCGTGACAGGTCACCA  60
            ||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  168  ATGGCTAGAGCGAGAAGCCGGAGCAGAAGCTATAGTCCCCGTCCTCGTGACAGGTCACCA  227

Query  61   CCACCGCGTGCGCGGAAAAGCTACGACGATTATCGCCACCGTGAACGCCCCTCTTCTCGC  120
            || | |||  || | ||| ||||||||||| |||||| ||| ||||| || |||||||| 
Sbjct  228  CCTC-GCGAACG-G-AAAGGCTACGACGATAATCGCCTCCGCGAACGTCCGTCTTCTCGT  284

Query  121  GACCACGAATCCTCTGGTCCTTCTGGTTTGCTCATCCGTAACCTCCCTCTCGATGCTAGG  180
            || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  285  GATCACGAATCCTCTGGTCCTTCTGGTTTGCTTATCCGTAATCTCCCTCTCGATGCTAGG  344



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26925502792


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5