BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893810
Length=231
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18920.1 | Symbols: | Cox19-like CHCH family protein | chr5... 370 3e-102
> AT5G18920.1 | Symbols: | Cox19-like CHCH family protein | chr5:6310064-6310846
FORWARD LENGTH=488
Length=488
Score = 370 bits (200), Expect = 3e-102
Identities = 221/230 (96%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 8 AGAGAGTGACGGAGAATCCCAATTCCGAGACGCAA------CCTCCTCCTCCGCCGAATC 61
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 36 AGAAAGTGACGGAGAATCCCAATTCCGAGACGCAACCTTCTCCTCCTCCTCCGCCGAATC 95
Query 62 ATCAAATGGATGCAGACGACGACGACGAGAATGTGAAACAGCTCAAGGAGTGTTCTTCTC 121
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 96 ATCAAATGGATGCAGACGACGATGACGAGAATGTGAAACAGCTCAAGGAGTGTTCTTCTC 155
Query 122 TCTATTTATCTTTACAGGATTGTCTTGTTGATAGCAATAGGGACTGGAAATCTTGCCAAA 181
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 156 TCTATTTATCTTTACAGGATTGTCTTGTTGATAGTAATAGGGACTGGAAATCTTGCCAAA 215
Query 182 AACATGTTCAAGCTTTGAAGGAATGTCATGAAAGGAGAATGAAGAAATGA 231
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 AACATGTTCAAGCTTTGAAGGAATGTCATGAAAGGAGAATGAAGAAATGA 265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10405424043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5