BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893817
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18990.1 | Symbols: | Pectin lyase-like superfamily protein... 1399 0.0
AT3G24130.1 | Symbols: | Pectin lyase-like superfamily protein... 1223 0.0
> AT5G18990.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:6340076-6341614 FORWARD LENGTH=993
Length=993
Score = 1399 bits (757), Expect = 0.0
Identities = 932/1013 (92%), Gaps = 26/1013 (3%)
Strand=Plus/Plus
Query 1 ATGGGAACTCATCGAATTATCATTGGTCTCGTCGCTCTTTGTTGTTTTTGTCTACCTCAT 60
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGGAACTCATCGAATTATCCTTGGTCTCGCCGCTCTTTGTTGTTTTTGTCTACCTCAT 60
Query 61 CTCATCGAAGCTAAACCATTCGGAGTGTACCAACGACAAGTGTTCGTGGATCAATCGGGC 120
||||| ||||||||| | | | | | || ||||| |||| ||||||||||||
Sbjct 61 CTCATTGAAGCTAAA-C---C--A-T-T-----CG--AAGTGATCGTCGATCAATCGGGC 105
Query 121 CATGGAAATTTCAGGACCATACAAAAAGCTATTGATTCGGTCCCAATCAACAATACTCAT 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 CATGGAAATTTCACGACCATACAAAAAGCTATTGATTCGGTCCCAATCAACAATACTCAT 165
Query 181 TGGTTCTTCATCAACGTTAAAGCCGGCCTTTACAGAGAGAAAATAGTGATACCGCaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 166 TGGTTCTTCATCAACGTTAAAGCCGGCCTTTACAGAGAGAAAATAACGATACCGCAAAAA 225
Query 241 aaaCCGTTCATAGTAATCGTGGGAGCTGGGAAAAGGTTAACGAGAGTAGAATGGGACGAC 300
||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 226 AAACCTTTCATAGTAATCGTGGGAGCTGGGAAACGGTCAACGAGAGTAGAATGGGACGAC 285
Query 301 CATGACTCGCTTGCACAAAGCCCTACCTTTGCTACTCTCGCTGATAACACCGTCGTTAAA 360
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 286 CATGCCTCGCTTGCACAAAGCCCTACCTTTGCTACTCTAGCTGATAACACCGTCGTTAAA 345
Query 361 A-GCATCACTTTCGCCAATTCCTACAACTTCCCTAGCAAAGGGAAAATGAACAAGAACCC 419
| | ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 346 AAG-ATCACTTTCGCCAATTCCTACAACTTCCCTAGCAATGGGAAAATAAACAAGAACCC 404
Query 420 TAGAGTTCCGGCCGTGGCAGCGTTTATCGGCGGTGATAAGTCGGCTTTTTACTCGGTAGG 479
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 405 TAGAGTTCCGGCCGTGGCAGCATTTATCGGCGGTGATAAGTCGGCTTTTTACTCGGTAGG 464
Query 480 ATTTGCTGGAATTCAAGATACCTTGTGGGACTCTGATGGCCGACACTACTTCCACCGATG 539
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 465 ATTTGCTGGAATTCAAGATACCTTGTGGGACTCGGATGGCCGACACTACTTCCATAGATG 524
Query 540 CACCATCCAAGGCGCGGTTGATTTCATCTTGGGGGGCGGCCAATCTATTTACCAGAGCTG 599
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 525 CACCATCCAAGGCGCGGTTGATTTCATCTTAGGGAGCGGCCAATCTATTTACCAGAGCTG 584
Query 600 TGTGATACAAGTGCTAGGTGGGCAGCTAGAACCGGCCGGG-ACAGAGGGTTACATAACGG 658
||||||||||||||||||||||||||||| ||||| ||| | | ||||||||||||||
Sbjct 585 TGTGATACAAGTGCTAGGTGGGCAGCTAGGACCGG--GGGTA-AC-GGGTTACATAACGG 640
Query 659 CTCAAGGACGGAACAACCCCTACGACGCGAATGGATTCGTATTCATCAACTGCCTCGTTT 718
|||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 641 CTCAAGGACGGACCAACGCAAACGACGCGAATGGATTCGTATTCATCAACTGCCTCGTTC 700
Query 719 ATGGAACCGGCAAGGCCTACTTGGGCAGAGCCTGGCGGCCTTACTCTCGAGTTATTTTTT 778
||||| ||||||||| |||||||||||||||||||| || ||||||||||| || ||||
Sbjct 701 ATGGATTCGGCAAGGCTTACTTGGGCAGAGCCTGGCGCCCATACTCTCGAGTGATATTTT 760
Query 779 ACAACTCGAACCTGACGGATGTGGTTGTTCCTCGAGGATGGTGGGAATGGAACCAA-ACG 837
||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | | |
Sbjct 761 ACAACTCGAACCTGACGGATGTGGTTGATCCTCTAGGATGGTGGGAATGGAACTACCA-G 819
Query 838 GGCTACGAAAAACAGCTGATCTTTGCAGAACATGGATGCTTCGGAAGTGGATCAAATACA 897
|| |||||||| ||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 820 GGTTACGAAAAGCAGCTGACCTATGCAGAACATGGATGCTTCGGAAGTGGATCAAATACA 879
Query 898 GGAAAACGTGTGAAGTGGGTTAAGAAGCTGAGTGGATCTGCCGTCCAACAATTGACTGAT 957
|| ||||| || ||||||||||||||||||| ||||||||||||||| ||| |||||
Sbjct 880 TCAAGACGTGCCAAATGGGTTAAGAAGCTGAGTGCATCTGCCGTCCAACATTTGGCTGAT 939
Query 958 CTTAGCTTCATTAATCGTGGTGGATGGCTTGA-GAATTTACCCATCCCTGTTT 1009
|| |||||||||||||||||||||||| |||| || ||||||||||| |||||
Sbjct 940 CTCAGCTTCATTAATCGTGGTGGATGGGTTGAAGA-TTTACCCATCCGTGTTT 991
> AT3G24130.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:8711663-8713424 REVERSE LENGTH=1071
Length=1071
Score = 1223 bits (662), Expect = 0.0
Identities = 899/1013 (89%), Gaps = 17/1013 (2%)
Strand=Plus/Plus
Query 1 ATGGGAACTCATCGAATTATCATTGGTCTCGTCGCTCTTTGTTGTTTTTGTCTACCTCAT 60
|||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct 64 ATGGGAACTCATCGAATTTTCATAGGTCTCATCGCTCTTTGTTGTTTTTGTCTACCTCAC 123
Query 61 CTCATCGAAGCTAAACCATTCGGAGTGTACCAACGACAAGTGTTCGTGGATCAATCGGGC 120
||||| |||||||| ||||||||||| ||||||| |||||| || || |||||||| |||
Sbjct 124 CTCATTGAAGCTAAGCCATTCGGAGTATACCAACAACAAGTATTTGTTGATCAATCCGGC 183
Query 121 CATGGAAATTTCAGGACCATACAAAAAGCTATTGATTCGGTCCCAATCAACAATAC-TCA 179
||||||||||||| ||| |||||||||||||||||||| || |||||||||||| | |||
Sbjct 184 CATGGAAATTTCACGACAATACAAAAAGCTATTGATTCTGTTCCAATCAACAAT-CGTCA 242
Query 180 TTGGTTCTTCATCAACGTTAAAGCCGGCCTTTACAGAGAGAAAATAGTGATACCGCaaaa 239
||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | |
Sbjct 243 TTGGTTCTTCATCAACGTTAAAGCCGGTCTTTACAGAGAGAAAATAAAGATACCGTATGA 302
Query 240 aaaaCCGTTCATAGTAATCGTGGGAGCTGGGAAAAGGTTAACGAGAGTAGAATGGGACGA 299
|||||||||||||||| | || |||||||| ||||||||||||||||| |||||||||||
Sbjct 303 AAAACCGTTCATAGTACTAGTAGGAGCTGGAAAAAGGTTAACGAGAGTTGAATGGGACGA 362
Query 300 CCATGACTCGCTTGCACAAAGCCCTACCTTTGCTACTCTCGCTGATAACACCGTCGTTAA 359
|||| ||||| |||||||||||||||||||| ||||||| || ||||||||||| |||||
Sbjct 363 CCATTACTCGGTTGCACAAAGCCCTACCTTTTCTACTCTTGCCGATAACACCGTTGTTAA 422
Query 360 AAGCATCACTTTCGCCAATTCCTACAACTTCCCTAGCAAAGGGAAAATGAACAAGAACCC 419
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 423 AAGCATCACTTTCGCCAATTCCTATAATTTCCCTAGCAAAGGGAAAATGAACAAGAACCC 482
Query 420 TAGAGTTCCGGCCGTGGCAGCGTTTATCGGCGGTGATAAGTCGGCTTTTTACTCGGTAGG 479
|||| ||| |||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 483 TAGAACTCCAGCCGTGGCAGCGTTGATAGGCGGCGATAAGTCGGCTTTTTACTCGGTAGG 542
Query 480 ATTTGCTGGAATTCAAGATACCTTGTGGGACTCTGATGGCCGACACTACTTCCACCGATG 539
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||
Sbjct 543 GTTTGCTGGAATTCAAGATACCTTGTGGGACTTTGATGGCCGGCACTACTTCCACCGGTG 602
Query 540 CACCATCCAAGGCGCGGTTGATTTCATCTTGGGGGGCGGCCAATCTATTTACCAGAGCTG 599
||||| ||||||||||| ||||||||||| || ||| ||||||||||||||||||||
Sbjct 603 TACCATACAAGGCGCGGTCGATTTCATCTTTGGTACCGGTCAATCTATTTACCAGAGCTG 662
Query 600 TGTGATACAAGTGCTAGGTGGGCAGCTAGAACCGGCCGGGACAGAGGGTTACATAACGGC 659
||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 663 TGTGATACAAGTGCTAGGTGGGCAGCTAGAACCGG--GGCT-AGCCGGTTACATAACGGC 719
Query 660 TCAAGGACGGAACAACCCCTACGACGCGAATGGATTCGTATTCATCAACTGCCTCGTTTA 719
||||||||||| |||||| ||||| || ||||||||| | ||||||||||||||||| ||
Sbjct 720 TCAAGGACGGACCAACCCGTACGATGCAAATGGATTCATCTTCATCAACTGCCTCGTATA 779
Query 720 TGGAACCGGCAAGGCCTACTTGGGCAGAGCC-TGGCG-GCCTTACTCTCGAGTTATTTTT 777
|||||| |||| ||||| ||||||||| ||| ||||| | ||| |||||||| || |||
Sbjct 780 TGGAACAGGCATGGCCTTCTTGGGCAG-GCCGTGGCGCGG-TTATTCTCGAGTGATCTTT 837
Query 778 TACAACTCGAACCTGACGGATGTGGTTGTTCCTCGA-GGATGGTGG-GAATGGAACCAAA 835
||||||||||||||||| ||||| ||||||||| || |||||| | | ||||||
Sbjct 838 TACAACTCGAACCTGACCGATGTAGTTGTTCCT-GAAGGATGG-GATGCATGGAATTTCG 895
Query 836 CGGGCTACGAAAAACAGCTGATCTTTGCAGAACATGGATGCTTCGGAAGTGGATCAAATA 895
|||| ||||||| |||||| |||||||||||||||||||||| ||||||||| ||||||
Sbjct 896 TGGGCCACGAAAACCAGCTGGTCTTTGCAGAACATGGATGCTTTGGAAGTGGAGCAAATA 955
Query 896 CAGGAAAACGTGTGAAGTGGGTTAAGAAGCTGAGTGGATCTGCCGTCCAACAATT-GACT 954
||||| |||||||||||||||||||||||| |||| ||||||| | ||| |||| | ||
Sbjct 956 TAGGAAGACGTGTGAAGTGGGTTAAGAAGCTTAGTGAATCTGCCATTCAA-AATTTGGCT 1014
Query 955 GATCTTAGCTTCATTAATCGTGGTGGATGGCTTGA-GAATTTACCCATCCCTG 1006
||||| ||||| |||||||||||||||||| |||| || ||| ||||||||||
Sbjct 1015 GATCTCAGCTTTATTAATCGTGGTGGATGGGTTGAAGA-TTTGCCCATCCCTG 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5