BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg893821

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G19030.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   643    0.0  


> AT5G19030.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:6357383-6359124 REVERSE LENGTH=682
Length=682

 Score =  643 bits (348),  Expect = 0.0
 Identities = 466/519 (90%), Gaps = 23/519 (4%)
 Strand=Plus/Plus

Query  1    ATGGCACTGTCTTCGTCGACTTTCCAAATTCCGTTATTCAAACACCAATT-CTTCGGAAC  59
            ||||| ||||||||||||||||||||||| |||||  |||||||||  || |||||||| 
Sbjct  44   ATGGCTCTGTCTTCGTCGACTTTCCAAATCCCGTTCCTCAAACACC-GTTACTTCGGAAT  102

Query  60   GTCTCAAAATCTGAGAACACTTCA-TTT-ACAGACGACGGA-AATTCCCAGA-A--G---  110
            ||||||||||||||| |||| | | ||| || || | |  | ||| |||||| |  |   
Sbjct  103  GTCTCAAAATCTGAGGACACCT-ATTTTAAC-GATGTC-TACAATCCCCAGAGATCGTTT  159

Query  111  G---TCGTCATTTCACACGGCGCGAAGCAAATC-CTGTTCTCCTCCGCTCCGGACCATCA  166
            |   ||||||||||| ||||||||||||||| | ||||||||||   |||||||||||||
Sbjct  160  GATTTCGTCATTTCATACGGCGCGAAGCAAA-CTCTGTTCTCCT---CTCCGGACCATCA  215

Query  167  GCTGCATCGCCGGAGACGATGGAACCAGAGAAGCATCTTCTCTTCCTACTTCGATCTCTT  226
            ||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||
Sbjct  216  GCTGCGTCGCCGGAGACGATGAAACCAGAGAAGCATCTTCTCTTCCTTCTTCGATATCTT  275

Query  227  CGGTTTTCGTGAAGGGGTTTTCGGATTCAGTGAGTGAAGGGCGTTTGAAGAAAGTCTTCT  286
            || |||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  276  CGCTTTTCGTGAAAGGGTTTTCGGATTCAGTGAGTGAAGGACGTTTAAAGAAAGTCTTCT  335

Query  287  CTGAGTTTGGACAAGTTACCAATGTAAAAATCATCGTAAACGAAAGGACTCGGCAGTCTC  346
            | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct  336  CCGAGTTTGGACAAGTTACCAATGTAAAAATCATCGCAAACGAAAGGACTCGGCAGTCAC  395

Query  347  TAGGATACGGATATGTCTGGTTCAACAGAAAAGAGGACGCACAGTTGGCTGTAGAAGCCA  406
            |||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||
Sbjct  396  TAGGATACGGATATGTCTGGTTCAACAGCAAAGAGGACGCACAGTCGGCTGTCGAAGCCA  455

Query  407  TGAACGGAAAGTTCTTTGATGGCAGGTTCATTCTTGTTAAATTTGGTCAGCCTGGACTGT  466
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct  456  TGAACGGAAAGTTCTTTGATGGCAGGTTCATTCTTGTTAAATTTGGTCAGCCTGGTTTGT  515

Query  467  CCCGTCGCCGGAGACCACATTCCGGTTTCCTTTT-GTAA  504
            |||||||||||||||||||||||| ||||||||| ||||
Sbjct  516  CCCGTCGCCGGAGACCACATTCCGATTTCCTTTTTGTAA  554



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5