BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893832
Length=285
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32800.1 | Symbols: | Integrase-type DNA-binding superfamil... 340 3e-93
> AT4G32800.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr4:15819524-15820871 FORWARD LENGTH=1348
Length=1348
Score = 340 bits (184), Expect = 3e-93
Identities = 207/218 (95%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGATTCGTCTTCCGACAAGGAGAAGAAGGAAAATAGTAAGCAGCCCGTGTATCGT 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 289 ATGGCGGATTCGTCTTCCGACAAGGAGAAGAAGGAAAATAATAAGCAGCCCGTGTATCGT 348
Query 61 GGAGTCCGTATGAGGAGCTGGGGCAAATGGGTATCGGAGATTCGTGAACC-ACGGAAGAA 119
||||||||||||||||||||||| |||||||||||||||||||| ||||| | |||||||
Sbjct 349 GGAGTCCGTATGAGGAGCTGGGGAAAATGGGTATCGGAGATTCGCGAACCGA-GGAAGAA 407
Query 120 ATCGAGAATCTGGATCGGGAATCTTCCGACGGTGGAGATGGCGATGCGTTCTCACGACGT 179
||||||||||||| |||||| | ||||||||| ||||||||| |||||| ||||||||||
Sbjct 408 ATCGAGAATCTGGCTCGGGACTTTTCCGACGGCGGAGATGGCTATGCGTGCTCACGACGT 467
Query 180 GGCGGCTATGAGTATCAAAGGAACTTCAGCCATTCTCA 217
||||||||||||||||||||||||||||||||||||||
Sbjct 468 GGCGGCTATGAGTATCAAAGGAACTTCAGCCATTCTCA 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13119882489
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5