BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893867
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19380.2 | Symbols: CLT1 | CRT (chloroquine-resistance trans... 1509 0.0
AT5G12170.2 | Symbols: CLT3 | CRT (chloroquine-resistance trans... 747 0.0
> AT5G19380.2 | Symbols: CLT1 | CRT (chloroquine-resistance transporter)-like
transporter 1 | chr5:6526807-6530592 REVERSE
LENGTH=1881
Length=1881
Score = 1509 bits (817), Expect = 0.0
Identities = 881/913 (96%), Gaps = 0/913 (0%)
Strand=Plus/Plus
Query 402 GTATGTAGCTGTATACTTTTCGATCTTGTATTTCAGATACCGAGCTGGAATTGTTACAAA 461
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 759 GTATGTAGCTGTATACTTTTCGATTTTGTATTTCAGATACCGAGCTGGAATTGTTACAAA 818
Query 462 AGAGATGCTATCAGTTCCAAAACTTCCATTTTTAATTGTTGGCGTCTTAGAGTCTCTTGC 521
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 819 AGAGATGCTATCAGTTCCAAAACTTCCATTTTTAATTGTTGGCGTCTTGGAGTCTCTTGC 878
Query 522 TCTAGCTGCTGGGATGGCGGCCGCATCAAATCTTTCTGGACCATCTACTACAGTTTTATC 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 TCTAGCTGCTGGGATGGCGGCCGCATCAAATCTTTCTGGACCATCTACTACAGTTTTATC 938
Query 582 TCAGACATTTCTTATCTGGCAAATTCTTTTCTCCATTATATTTCTCGGGAGGAGATATAG 641
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 TCAGACATTTCTTGTCTGGCAAATTCTTTTCTCCATTATATTTCTCGGGAGGAGATATAG 998
Query 642 GATAAATCAAATATTAGGATGTACTCTTGTAGCAGTTGGTGTAATCGTCAGTGTGGCAAG 701
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 999 AATAAATCAAATATTGGGATGTACTCTTGTAGCATTTGGTGTAATCGTCAGTGTAGCAAG 1058
Query 702 TGGATCGGGTGCCGCTCATTCATTTAAAGATACAGGAATACTTTGGAGTCTTCTTATGGT 761
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 TGGGTCGGGTGCCGCTCATTCATTTAAAGATACAGGAATACTTTGGAGTCTTCTTATGGT 1118
Query 762 GTTGTCTTTTCTGCTTCAAGGAGCAGATACAGTAATGAAGGAAGTCATCTTTCTAGATAG 821
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 GTTTTCTTTTCTGCTTCAAGGAGCAGATACAGTAATGAAGGAAGTCATCTTTCTAGATAG 1178
Query 822 CAAAAAGCGGTTGAAGGGTGCTTCACTTGATCTGTTTGTTGTAAACTCATATGGTTCAGT 881
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1179 CAAAAAGCGATTGAAGGGTGCTTCACTTGATTTGTTTGTTGTAAACTCATATGGTTCAAT 1238
Query 882 TTTCCAAGTCATATGCATTGCATTGCTTCTTCCTTTTCTTTCAAAACTTTGGGGCATACC 941
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1239 TTTCCAAGTCATATGCATTGCGTTGCTTCTTCCTTTTCTTTCAAAGCTTTGGGGCATACC 1298
Query 942 GTTTAACCAACTACCGAGTTATATCAGAGACGGGGGTGCTTGTTTTCTGAATATTGGTTC 1001
|||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1299 GTTTAACCAACTACCGAGCTATATCAGAGACGGGGGTGCTTGCTTTCTAAATATTGGTTC 1358
Query 1002 TAGAATAACAGGATGCGAAGGGGCTCCCCTTCTTCCTGTAATGTTTGTCATGATGAACAT 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 TAGAATAACAGGATGCGAAGGGGCTCCCCTTCTTCCTGTAATGTTTGTCATGATGAACAT 1418
Query 1062 GGCTTACAACATCTCCCTTCTACGCCTTATCAAGATCTCATCTGCAGTTGTGTCGTCTCT 1121
|||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1419 GGCTTATAACATCTCTCTTCTACGCCTCATCAAGATTTCATCTGCAGTTGTGTCGTCTCT 1478
Query 1122 GGCATCCACCGTTTCAGTGCCCATAGCGGTGTACTGTTTCACGCTTCCCCTACCGTACCT 1181
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1479 GGCATCCACCGTTTCAGTGCCCATAGCGGTGTACTGTTTCACGCTTCCCCTACCATACCT 1538
Query 1182 TGGGGTCGCATCTACACTTCCAAGGGGGTTTGTTGCAGGCACAGTCATCCTAGTACTCGG 1241
|||||| ||||||||||| |||||||||||||||||||||||| ||||||| ||| ||||
Sbjct 1539 TGGGGTGGCATCTACACTACCAAGGGGGTTTGTTGCAGGCACAATCATCCTTGTAGTCGG 1598
Query 1242 CATGCTTCTATATGCTTGGACACCATCTACTAACACTTCCGATTCGATAATCCCCTTGCC 1301
||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 1599 CATGCTTCTATATGCTTGGACACCATCTACTAACACTTCCGATTCAATTATCCCCTCACC 1658
Query 1302 CCCATCCACCTAG 1314
||||||||| |||
Sbjct 1659 CCCATCCACATAG 1671
Score = 459 bits (248), Expect = 4e-128
Identities = 377/433 (87%), Gaps = 34/433 (8%)
Strand=Plus/Plus
Query 1 ATGGCTACAACGAGCTCCGGCCGGTTAATCGCCGGTTCAACGGCGTCGATCGGCTCAATC 60
||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 148 ATGGCAACAACGAGCTCCGACCGGTTAATCGCCGGTTTAACGGCGTCGATCGGCTCAATC 207
Query 61 AAATCGCGTTACGCGAATCCAGCTCAATCCGTTTC-CATAATCTGTCGAAATCAAACCAA 119
|||| |||||||| |||||||||||||||||||| | |||||||||||||||||| |||
Sbjct 208 GAATCTCGTTACGCAAATCCAGCTCAATCCGTTTCTC-TAATCTGTCGAAATCAAATCAA 266
Query 120 TGGTGCACCTCCCATCGTCCTTG-GGTCCTCTCGAAGGTCCAGGCTGTGGTTAATCGAGG 178
||| ||||| || ||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 267 TGGCGCACCGCCTATCGT-CTTGCGGTCCTCTCGAAGGTCCAGGCTGTGGTTAATCGAGG 325
Query 179 CGATTCCTCCGGCGAAGTCCTGGGACGGATCTAACGATGGCGA--A-G----C--G---- 225
||||||||||||| ||||||||| ||||||||||||||||||| | | | |
Sbjct 326 CGATTCCTCCGGCAAAGTCCTGGAACGGATCTAACGATGGCGACGAAGATATCAAGAAGT 385
Query 226 C-G----T---AATTACGCGATCGGTGG------TGG-C--GCGGTCGCCGGAAAACATG 268
| | | ||||||||||||||||| ||| | ||||||||||||||| |||
Sbjct 386 CAGACACTCGTAATTACGCGATCGGTGGAACCGGTGGTCACGCGGTCGCCGGAAAAGATG 445
Query 269 ACAGGACGATGGAGATAGTTATAGCAGCGGCGACCACGGCGGCGTTGGGGGTCGGGAATC 328
|||| |||||||||||||| |||||||||||||||||||||||| |||| ||||||||||
Sbjct 446 ACAGAACGATGGAGATAGTAATAGCAGCGGCGACCACGGCGGCGCTGGGTGTCGGGAATC 505
Query 329 GCGTATTGTATAAACTGGCTCTTATTCCTCTCAAGCAATACCCCTTCTTCCTCGCGCAGC 388
||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 506 GCGTACTGTATAAGCTGGCTCTTATTCCTCTCAAGCAATATCCCTTCTTCCTCGCGCAAC 565
Query 389 TCTCCACCTTCGG 401
||||||| |||||
Sbjct 566 TCTCCACATTCGG 578
> AT5G12170.2 | Symbols: CLT3 | CRT (chloroquine-resistance transporter)-like
transporter 3 | chr5:3931562-3935129 FORWARD
LENGTH=1614
Length=1614
Score = 747 bits (404), Expect = 0.0
Identities = 835/1038 (80%), Gaps = 50/1038 (5%)
Strand=Plus/Plus
Query 254 TCGCCGGAAAACATGACAGGACGATGGAGATAGTTATA-GCAGCGGCGACCACGGCGGCG 312
||| |||| | |||| | |||| ||||||||| ||| | |||||| |||||||||
Sbjct 377 TCGACGGAGAGCATGTTAAGACGGCGGAGATAGTGATATG-GGCGGCGGTTACGGCGGCG 435
Query 313 TTGGGGGTCGGGAATC-GCGT-ATTGTATAAACTGGCTCTTA-TTCCTCTCAAGCAATAC 369
|| || ||| |||| | | || | ||||||| || || ||| |||| |||||| | ||
Sbjct 436 TTTGGCGTC-GGAAACAGAGTGA-TGTATAAGCTCGC-GTTAGTTCCACTCAAGGAGTAT 492
Query 370 CCCTTCTTCCTCGCGCAGCTCTCCACCTTCGGGTATGTAGCTGTATACTT-TTCGATCTT 428
|| |||||||| ||||| ||||||||||||||||||||||||||||| || | | |||||
Sbjct 493 CCTTTCTTCCTTGCGCAACTCTCCACCTTCGGGTATGTAGCTGTATA-TTATACTATCTT 551
Query 429 GTA-TTTCAGATACCGAGCTGGAATTGTTACAAAAG-AGATGCTATCAGTTCCAAAACT- 485
||| |||| |||| || ||||||| ||| ||| | | | ||||| || || |||||| |
Sbjct 552 GTATTTTC-GATATCGTGCTGGAACTGTCACAGATGCA-ATGCTCTCGGTGCCAAAA-TC 608
Query 486 TCCATTTTTAATTGTTGGCGTCTTAGAGTCTCTTGCT-CTAGCTGCTGGGATGGCGGCCG 544
||||||||||||||||||| |||||||| |||| ||| | ||||||||| ||||| ||||
Sbjct 609 TCCATTTTTAATTGTTGGCATCTTAGAGGCTCTAGCTGC-AGCTGCTGGCATGGCAGCCG 667
Query 545 CATCAAATCTTTCTGGACCATCTACTACAGTTTTATCTCAGACATTTCTTATCTGGCAAA 604
|| | |||||||| || ||||| || |||||||||||||||||||||||| |||||||||
Sbjct 668 CAGCGAATCTTTCGGGGCCATCAACGACAGTTTTATCTCAGACATTTCTTGTCTGGCAAA 727
Query 605 TTCTT-TTCTCCATTATATTTCTCGGGAGGAGATATAG-GATAAATCAAATATTAGGATG 662
|| || ||||||||||| |||||||||||||||||||| | |||| |||||| | |||||
Sbjct 728 TT-TTCTTCTCCATTATTTTTCTCGGGAGGAGATATAGCG-TAAACCAAATACTCGGATG 785
Query 663 TACTCTTGTAGCAGTTGGTGTAATCGTCAGTGTGGCAAGTGGATCGGGTGCCGCTCATTC 722
|||||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 786 TACTCTTGTAGCTCTCGGTGTAATCGTCAGTGTGGCAAGTGGATCAGGTGCTGCTCATTC 845
Query 723 ATTTAAAGATA-CAGGAATACTT-TGGAGTCTTCTTATGGTGTTGTCT-TTTC-TGCTTC 778
||| || || | | ||| || || |||| |||||| || | ||| ||| |||| ||||||
Sbjct 846 ATTGAATGA-AGCCGGAGTA-TTATGGATTCTTCTAAT-G-GTTCTCTCTTTCTTGCTTC 901
Query 779 AAGGAGCAGATACAGTAATGAAGGAAGTCATCTTTCTAGATAG-CAAAAAGCGGTTGAAG 837
||||||||| ||||||| ||||||||||||||||| ||||||| |||| | || || |||
Sbjct 902 AAGGAGCAGGTACAGTATTGAAGGAAGTCATCTTTATAGATAGCCAAAGA-CGATTAAAG 960
Query 838 GGTGCTTCACTTGATCTGTTTGTTGTAAACTCATATGGTTCAGTTTTCCAAGTCATATGC 897
||||||||||| ||||| ||| | ||||| ||||||||||||| |||||||| ||| |||
Sbjct 961 GGTGCTTCACTCGATCTATTTATAGTAAATTCATATGGTTCAGCTTTCCAAGCCATCTGC 1020
Query 898 ATTGCATTGCTTCTTCCTTTTCTTTCAAAACTTTGGGGCATACCGTTTAACCAACTACCG 957
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | |
Sbjct 1021 ATTGCGTTGCTTCTTCCATTTCTTTCAAAACTTTGGGGCATACCGTTTAACCAACT-CGG 1079
Query 958 -AGTTATATCAGAGACGG-G-GGTGCTTGTTTTCTGAATATTGGTTCTAGAATAACAGGA 1014
| || | | ||| || | ||| ||||||||| || | ||| | | || || ||||
Sbjct 1080 TACCTACCTAAAAGATGGTGCGGT--TTGTTTTCTCAACAATGGGACAATAACAAAAGGA 1137
Query 1015 TGCGAAGGGGCTCCCCTTCTT-CCTGTAATGTTTGTCATGATGAACAT-GGCTTACAACA 1072
|| || |||||||| || || ||| | ||||||| || |||||||| |||| | ||||
Sbjct 1138 TGTGATGGGGCTCCGTTT-TTGCCTCTGTTGTTTGTGATAATGAACATTGGCT-ATAACA 1195
Query 1073 TCTCC-CTTCTACGCCTTATCAAGATCTCATCTGCAGTTGTGTCGTCTCTGGCATCCACC 1131
| | | ||| || | || ||||||| ||||| || || || || | ||| ||||| ||
Sbjct 1196 T-TGCTCTTTTAAGACTCCTCAAGATTTCATCCGCGGTGGTTTCATGTCTTGCATCAACA 1254
Query 1132 GTTTCAGTGCCCATAGCGGTGTA-CTGTTTCACGCTTCCCCTACCGTACCTTGGGGTCGC 1190
|| |||||||| || || |||| ||||| ||| | || ||||||||||||| || ||
Sbjct 1255 GTCTCAGTGCCAATTGCAGTGTTTCTGTT-CACAATGCCATTACCGTACCTTGGAGTTGC 1313
Query 1191 ATC-TACACTTCCAAGGGGGTTTGTTGCAGGCACAGTCATCCTAGTACTCGGCATGCTTC 1249
||| | |||| |||| ||||| | | ||| ||| |||| || ||| | || ||| |||
Sbjct 1314 ATCAT-CACTACCAAAAGGGTTCATGGGAGGAACAATCATACTTGTATTGGGAATGATTC 1372
Query 1250 TATAT-GCTTGGACACCA 1266
| ||| | ||||||||||
Sbjct 1373 TTTATAG-TTGGACACCA 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64658301960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5