BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893880
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19490.1 | Symbols: | Histone superfamily protein | chr5:65... 915 0.0
> AT5G19490.1 | Symbols: | Histone superfamily protein | chr5:6576769-6578273
REVERSE LENGTH=795
Length=795
Score = 915 bits (495), Expect = 0.0
Identities = 649/719 (90%), Gaps = 28/719 (4%)
Strand=Plus/Plus
Query 1 ATGGCGGTCCCTCTTCTTGTTTCTAAAGCTTTGGAGCTATTTTTACAAGACTTGTGTAAT 60
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 85 ATGGCAGTCCCTCTTCTTGTTTCTAAAGCTTTGGAGCTGTTTTTACAAGACTTGTGTAAT 144
Query 61 CACACATATGATGTAACTCTCCGCCGAGGTGCAAAAACTGTCAACTCCTTTCATTTGAAG 120
||||| |||||||||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct 145 CACACGTATGATGTAACTCTAAGCCGAGGTGCTAAAACTGTCAACGCCTTTCATTTGAAG 204
Query 121 CAGTGTGTGCACGCCTTTAATATCTTTGATTTTCTAAGAGAGACTGTTGGTAAAGTTCCT 180
||||||||||| || |||| ||||||||||||||||||| ||||| | ||||||||||
Sbjct 205 CAGTGTGTGCAAGCGACTAATGTCTTTGATTTTCTAAGAGACACTGTCGCTAAAGTTCCT 264
Query 181 GATTTGGGTGGCTCTGATGCTGAAGACCAATCAGCTACCAAAAGAAGGAAAGTAGTTGAT 240
|||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||
Sbjct 265 GATTTGGGTGGCTCAGACACTGAAGACCAATCAGCTACCAAAAGAAGGAAAGTTGTTGAT 324
Query 241 GAAAGAAGTTGCAACGATGAAGATATGACGAAGACCACTCAAATGCATGAGGTCAAACAT 300
| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 325 GGAAGTAGTTGCAACGATGAAGATATGATAAAGACCACTCAAATGCATGAGGTCAAACAT 384
Query 301 ACTAGCGGTGGCAGAGGAAGGCGAGGTAGAGGCTGCGGACGAGGTGGTGGAAGAACAGGA 360
|||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 385 ACTAGCTGTGGCAGAGGAAGGCGAGGTAGAGGCCGCGGACGAAGTAGTGGAAGAACAGGA 444
Query 361 AGTGGGCTGTCTCTAAAATTTGAAGAAGAT---G--G----TTCTCCCGAAAGCAGCAGG 411
|||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 445 AGTGGGCTGTCTCTAAAATTTGAAGAAGATTTAGAAGACGGTTCTCCCGAAAGCAGCAGG 504
Query 412 ACCCCGTCTCCCGAAATCGGGAGCCTTTCTCATGACGATATATCTTGGAAGAAAGTCGCA 471
|||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 505 ACCCCGTCTCCCGAAAACGGGAGCCTTTCTCACGACGATACATCTTGGAAGAAAGTTGCA 564
Query 472 TCACACAACAATCAT-A--GTA--A-CTCAGTGGTAAAAGTAAGGAACTTTGATCTTAAT 525
||||||||||||||| | ||| | ||||| |||||||||||||||||| |||||||||
Sbjct 565 TCACACAACAATCATCATAGTAGTAACTCAGAGGTAAAAGTAAGGAACTTCGATCTTAAT 624
Query 526 GTTGAATTAGATGAGAATGGAGACTCA-GCTACTTGGCTGGACAGAGC-GCTAGAGGGAA 583
|||||||||||||||||||||||| | ||||| |||||||| | | | ||||||| |||
Sbjct 625 GTTGAATTAGATGAGAATGGAGACA-ATGCTACATGGCTGGAAACA-CAGCTAGAGAGAA 682
Query 584 GTCCAGATTGGCCGTTGTTGGAGATTAACGAAATGAAAATAGATCCTGAT---CAACAAC 640
||||||||| |||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 683 GTCCAGATTACCCGTTG--G-AGATTAACGAAATGAAAATAGATCCTGATGATCAACAAC 739
Query 641 AGGCTAGTAGTGCTAATGATGAGGAAGATTATGATGAAGAAAGCATAGACCAAGAGTGA 699
|||||||| | ||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 740 AGGCTAGT-G--CTAGTGACGAGGAAGATTATGATGAAGAAAGCATAGACCAAGAGTGA 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5