BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg893902

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G19710.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   401    2e-111


> AT5G19710.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: HPT phosphotransmitter 4 (TAIR:AT3G16360.2); Has 1807 
Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria 
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses 
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:6664745-6666107 
REVERSE LENGTH=345
Length=345

 Score =  401 bits (217),  Expect = 2e-111
 Identities = 266/289 (92%), Gaps = 5/289 (2%)
 Strand=Plus/Plus

Query  166  GGAGCGAGATCCAATAGAGGTACCCATGATTACCAAATGCATTCTTCAGTTAGAAAGCAG  225
            ||||||||| ||||||||||||||||||||||||  ||||||||||| | ||||||||||
Sbjct  61   GGAGCGAGAGCCAATAGAGGTACCCATGATTACCCGATGCATTCTTCGGCTAGAAAGCAG  120

Query  226  CAGCGCCAGGCTAGTTATAATATTTTTGTAATTTGCATCGGTGCTAGCAAAGTTTTTAAG  285
            ||||||||||||||||||||||||||||||||   ||||||||||| ||||||| |||||
Sbjct  121  CAGCGCCAGGCTAGTTATAATATTTTTGTAAT---CATCGGTGCTATCAAAGTTGTTAAG  177

Query  286  GAACTTCAGAAGGCAAACACATCACTCAAAGCTAGCAACACAGAAGGAATAAAAGTAGCA  345
            |||||| |||||||||||||||  ||||||||| |||||| ||||||| |||||| ||||
Sbjct  178  GAACTTAAGAAGGCAAACACATTTCTCAAAGCTGGCAACATAGAAGGAGTAAAAGGAGCA  237

Query  346  CTAGG-TGATATTAAGAAAGAGCACAGTAAACTCCGCGCAAAGTTTGAGACTTATTTCCA  404
            || |  |||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct  238  CT-GCCTGATATTAAGAAAGAGCACAGTGAACTCCGGGCAAAGTTTGAGACTTATTTCCA  296

Query  405  GTTGATGAGACAAGCTGGCCCAACAGATGTAGCTGTGAATTCAAGCTGA  453
            |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  297  GTTGATGAGACAAGCTGGTCCAACAGATGTAGCTGTGAATTCAAGCTGA  345



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21564864321


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5