BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893903
Length=2358
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25350.2 | Symbols: OVA9 | glutamine-tRNA ligase, putative /... 1339 0.0
AT5G19720.1 | Symbols: | Ribosomal protein L25/Gln-tRNA synthe... 647 0.0
> AT1G25350.2 | Symbols: OVA9 | glutamine-tRNA ligase, putative
/ glutaminyl-tRNA synthetase, putative / GlnRS, putative |
chr1:8889137-8894261 REVERSE LENGTH=2602
Length=2602
Score = 1339 bits (725), Expect = 0.0
Identities = 971/1091 (89%), Gaps = 11/1091 (1%)
Strand=Plus/Plus
Query 1270 TTCACACCCCATCCTCATACTGGTGAC-AGATGGCGTATCTATCCGACCTATGATTATGC 1328
||| |||| |||||| | |||||||| || ||| |||||||||||| |||||||||||
Sbjct 1371 TTCGCACCTCATCCTAAGGCTGGTGACAAG-TGGTGTATCTATCCGAGTTATGATTATGC 1429
Query 1329 CCACTGCATTGTTGATTCTCTTGAAAATATAACACATTCGCTCTGCACTCTTGAATTTGA 1388
|||||||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 1430 CCACTGCACTGTTGATTCTCTTGAGAATATAACGCATTCGCTCTGTACTCTTGAATTTGA 1489
Query 1389 GACCAGACGTGCTTCTTACTATTGGTTATTACACTCGCTGGGTCTCTACATGCCGTATGT 1448
||| | |||||||| ||||||||| | ||||| || ||| ||||||||||||| |||||
Sbjct 1490 AACCCGGCGTGCTTCATACTATTGGCTGTTACATTCCCTGAGTCTCTACATGCCATATGT 1549
Query 1449 GTGGGAGTATTCGCGGTTGAATGTCACAAACACTGTTATGTCCAAGCGTAAGCTGAACTA 1508
|||||| ||||| ||||||||||| ||||||||||| ||||||||||||||| |||| ||
Sbjct 1550 GTGGGAATATTCACGGTTGAATGTGACAAACACTGTAATGTCCAAGCGTAAGTTGAATTA 1609
Query 1509 CATTGTGACAAACAAGTATGTTGATGGTTGGGATGATCCACGTCTTTTAACACTTGCTGG 1568
||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1610 CATAGTGACAAACAAGTATGTTGATGGTTGGGATGATCCACGTCTTTTGACACTTTCTGG 1669
Query 1569 TTTGAGGCGGAGAGGTGTAACTCCTACTGCGATTAATGCATTTGTACGAGG-ACTTGGAA 1627
|||||| ||||| ||||| ||| | |||||||||||||||||||||||||| | |||| |
Sbjct 1670 TTTGAGACGGAGGGGTGTGACTTCAACTGCGATTAATGCATTTGTACGAGGCA-TTGGGA 1728
Query 1628 TTACCAGAAGTGATGGTAGCCTGATACATGTGAGTCGTCTTGAGCATCATATTAGAGAGG 1687
|||| ||||||||||||||| ||||||| || ||||||||||||||||||||||||||||
Sbjct 1729 TTACTAGAAGTGATGGTAGCATGATACACGTAAGTCGTCTTGAGCATCATATTAGAGAGG 1788
Query 1688 AGTTGAATAAAACAGCTCCC-CGCACCATGGTGGTGCTGAATCCTCTTAAGGTGGTTATC 1746
| |||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1789 AATTGAATAAAACAGC-CCCTCGCACCATGGTGGTGCTTAATCCTCTTAAAGTGGTCATC 1847
Query 1747 ACCAATTTGGAAGCAGACAAGGTTATGGAGCTTGATGCTAAAAGATGGCCTGATGCTCAG 1806
|||||||||||| |||||||| |||| ||||||||||| ||||| |||||||||||||||
Sbjct 1848 ACCAATTTGGAATCAGACAAGCTTATAGAGCTTGATGCCAAAAGGTGGCCTGATGCTCAG 1907
Query 1807 AACGATGATCCCTCAGCATTCTACAAGGTTGCGCTCTCTAGAGTTATATACATTGAGCAA 1866
||||||||||||||||||||||||||||| || ||||||||||| |||||||||| |||
Sbjct 1908 AACGATGATCCCTCAGCATTCTACAAGGTACCGTTCTCTAGAGTTGTATACATTGACCAA 1967
Query 1867 TCTGACTTCCAAAAGGAGGATTCAAAAAATTATTTTGGACTTGCCCCTGGTAAATCAGCC 1926
|||||||||| || | ||||||||||| |||||| ||| || |||||||||||||| |
Sbjct 1968 TCTGACTTCCGAATGAAGGATTCAAAAGATTATTATGGGCTCGCCCCTGGTAAATCTGTT 2027
Query 1927 TTGCTTCGATACGCTTTCCCAATCAAGTGCACCAACGTTGTCTTTGCTAATGACACTGAA 1986
||||| |||| ||||||||||||||||||||||| |||||||||||| |||||| ||||
Sbjct 2028 TTGCTAAGATATGCTTTCCCAATCAAGTGCACCAATGTTGTCTTTGCTGATGACAATGAA 2087
Query 1987 ACCGTTTGTGAGATTCATGTGGAGTATGATCCTGAGAAAAAGAT-AAAGCCAAAGGGTGT 2045
|||||| |||||||||||| ||| ||||| || ||||||||| | |||||||||||| ||
Sbjct 2088 ACCGTTCGTGAGATTCATGCGGAATATGACCCCGAGAAAAAG-TCAAAGCCAAAGGGGGT 2146
Query 2046 TCTACACTGGGTCCCTGCATCTTCACCAGGAAAAGAGCCCATTAAGGTTGAAGTCCG-TT 2104
||||||||||||| ||| |||||| |||||| |||||||||| ||||| |||||||| ||
Sbjct 2147 TCTACACTGGGTCGCTGAATCTTCCCCAGGAGAAGAGCCCATAAAGGTGGAAGTCCGATT 2206
Query 2105 CATTTGAGAACCTCTTTAATTCCGAGAACCCAGCTGAACTCAATGATGATTGGCTCACCG 2164
||||||||| |||||||| ||||||||||| |||||||||||||||| ||||||||| |
Sbjct 2207 -ATTTGAGAAACTCTTTAACTCCGAGAACCCGGCTGAACTCAATGATGCTTGGCTCACTG 2265
Query 2165 ACATTAACCCCAACTCCAAAGTGGTAGTTTCTGATGCCTATGCTTTATCAACCATTAAAG 2224
|||||||||| ||||| ||| ||||| |||||| |||||||||| |||||||| ||||||
Sbjct 2266 ACATTAACCCAAACTCTAAAATGGTAATTTCTGGTGCCTATGCTGTATCAACCCTTAAAG 2325
Query 2225 ATGCTGCCGTTGGGGACACATTCCAGTTCGAGAGGCTAGGTTATTACACGGTTGACAAGG 2284
||||||| |||||||||| |||||| ||||||||||||||||||||| |||| |||||||
Sbjct 2326 ATGCTGCAGTTGGGGACAGATTCCAATTCGAGAGGCTAGGTTATTACGCGGTGGACAAGG 2385
Query 2285 ACTCTAAACCGGGAAAGCTTGTGTTTAACCGGACGGTCACGCTCAAAGACGGCTACAAGA 2344
||||| | || |||||||||||||| |||||||||||||| |||| |||| ||||| ||
Sbjct 2386 ACTCTGAGCCAGGAAAGCTTGTGTTCAACCGGACGGTCACACTCAGAGACAGCTACGGGA 2445
Query 2345 AAGGTGGGAAA 2355
||||||| |||
Sbjct 2446 AAGGTGG-AAA 2455
Score = 1042 bits (564), Expect = 0.0
Identities = 838/965 (87%), Gaps = 39/965 (4%)
Strand=Plus/Plus
Query 305 TTGAAGTTTCCCCAGAAGATATTGAGAAAACAGTCAAACAAATCTTTGAAGAAAATATGA 364
||||||||||||||||||||||||||||| |||| ||| |||||||||||| |||| ||
Sbjct 415 TTGAAGTTTCCCCAGAAGATATTGAGAAAGCAGTTAAAGGAATCTTTGAAGAGAATAAGA 474
Query 365 AAACAATATTGGAGCAGCGGT-CCAGAACTAGTGTGGGTAAATTAACCGGACATGTCCGG 423
||||||||||||||||||| | | |||||| ||||||| ||||| ||||||||||||
Sbjct 475 AAACAATATTGGAGCAGCGCTATC-GAACTAATGTGGGTGAATTATTTGGACATGTCCGG 533
Query 424 AAAAGTTTGCCATGGGCAGATCCTGAGACTGTTAGGAGAGTCATAGAAGA-AAAACTGTA 482
||||||||||||||||| |||||| ||| ||| | || | ||||||| || |||| ||||
Sbjct 534 AAAAGTTTGCCATGGGCCGATCCTAAGATTGTAAAGAAACTCATAGATGAGAAAA-TGTA 592
Query 483 TGCA-TTGCTTGGCGAGAAAACAGCTGCTGACAATGAGAAACCTACAAAAAAGAAGGAGA 541
|| | ||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 593 TG-AGCTGCTTGGTGAGAAAACCGCTGCTGATAATGAAAAACCTACAAAAAAGAAGGAGA 651
Query 542 AGAAAGAGAAGCCCACCAAAGT--A-G---AGAAAGCTGTTTTGGAAGCTATCC-CACAT 594
|||| |||||||| ||||||| | | |||||||||| ||||| ||| || || |
Sbjct 652 AGAAGGAGAAGCCTGCCAAAGTCGAGGAAAAGAAAGCTGTGGTGGAAACTA-CCGCAGAG 710
Query 595 CCATCTGAAGAGGAGCTTAATCCATATTCTATATTCCCTCAGCCA-AAGGAAAATCTTAA 653
||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||
Sbjct 711 CCATCTGAAGAGGAGCTTAATCCATATACTATATTCCCTCAGCCAGAA-CAAAATTTTAT 769
Query 654 GGTTCACACAGAAGTGCTTTTCAGTGACGGCTCTGTGCTCATATGTAGCAATACCAAGGA 713
|||||||||||||||| |||||||||| |||||| | |||| |||||||||||| |||||
Sbjct 770 GGTTCACACAGAAGTGTTTTTCAGTGATGGCTCTATTCTCAGATGTAGCAATACAAAGGA 829
Query 714 AGTGCTTGACAAACATCTCAAGGTGACTGGAGGGAAAGTTTATACCCGGTTCCCTCCTGA 773
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 830 AGTACTTGACAAACATCTCAAGGTGACTGGAGGGAAAGTTTATACTCGGTTCCCCCCTGA 889
Query 774 ACC-AA------ATGG--TTA---TC---TCC-AT-ATAGGACATGCAAAGGCTATGTCT 816
||| || |||| ||| || ||| || | | || | | ||||||||| |
Sbjct 890 ACCAAATGGGCTATGGTTTTATGTTCGTTTCCAATGCTTGTAC-TTC-CAGGCTATGTTT 947
Query 817 GTTGATTTTGGTCTTGCAAAGGAGCGAGGGGGCTGGTGTTATCTGAGGTACGATGATACA 876
|||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||
Sbjct 948 GTTGATTTTGGTCTTGCAAAGGAGCGAGGGGGTTGCTGTTATCTAAGGTATGATGATACA 1007
Query 877 AATCCTGAGGCGGAAAAGAAAGAGTATATTAGTCACATTGAAGAAATTGTTAATTGGATG 936
||||| ||||| |||||| |||||||||||| ||| ||||||||||||||||| ||||||
Sbjct 1008 AATCCAGAGGCAGAAAAGGAAGAGTATATTAATCATATTGAAGAAATTGTTAAGTGGATG 1067
Query 937 GGTTGGGAACCCTTCAAGATTACATACACCAGTGATTATTTCCAAGAATTGTATGATTTG 996
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1068 GGTTGGGAACCCTTCAAGATTACATACACCAGTGATTATTTCCAGGAACTGTATGATTTG 1127
Query 997 GCAGTGGAGTTGATTCGAAGAGGTCACGCTTATGTTGATCATCAGAAC-GCTGAGGAGAT 1055
||||||||||||||||| |||||||| ||||||||||||||||||| | ||||| |||||
Sbjct 1128 GCAGTGGAGTTGATTCGGAGAGGTCATGCTTATGTTGATCATCAGA-CTGCTGATGAGAT 1186
Query 1056 AAAAGAGTACAGAGAGAACAAAATGAACAGCCCCTGGAGGGAAAGGCCTATTGAAGAATC 1115
|||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 1187 AAAAGAGTACAGAGAGAAGAAAATGAACAGCCCCTGGAGGGACAGACCTATTGAAGAATC 1246
Query 1116 TCTAGAGCTTTTTGACGAAATGAGACGAGGAATGATCGACGA-GGGAAAGGCCACACTAA 1174
|||| | |||||||| |||||||||||||| || || || || ||||| ||| || ||||
Sbjct 1247 TCTAAAACTTTTTGATGAAATGAGACGAGGCATCATTGAGGAAGGGAA-GGCAACCCTAA 1305
Query 1175 GATTAAAGCAAGACATGAAGAGTGATAATTGTAATATGTATGACCTTATTGCCTATCGTA 1234
|| | |||||||| ||| ||||||| |||| |||||||||||| |||||||||||||| |
Sbjct 1306 GAATGAAGCAAGATATGCAGAGTGACAATTTTAATATGTATGATCTTATTGCCTATCGAA 1365
Query 1235 TAAAG 1239
|||||
Sbjct 1366 TAAAG 1370
> AT5G19720.1 | Symbols: | Ribosomal protein L25/Gln-tRNA synthetase,
anti-codon-binding domain | chr5:6667664-6668587 FORWARD
LENGTH=513
Length=513
Score = 647 bits (350), Expect = 0.0
Identities = 397/420 (95%), Gaps = 1/420 (0%)
Strand=Plus/Plus
Query 1771 ATGGAGCTTGATGCTAAAAGATGGCCTGATGCTCAGAACGATGATCCCTCAGCATTCTAC 1830
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1 ATGGAGCTTGATGCTAAAAGATGGCCTGATGCTCCGAATGATGATCCCTCAGCATTCTAC 60
Query 1831 AAGGTTGCGCTCTCTAGAGTTATATACATTGAGCAATCTGACTTCCAAAAGGAGGATTCA 1890
|||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 61 AAGGTTCCGCTCTCTAGAGTTATATACATGGAGCAATCTGACTTCCAAAATGAGGATTCG 120
Query 1891 AAAAATTATTTTGGACTTGCCCCTGGTAAATCAGCCTTGCTTCGATACGCTTTCCCAATC 1950
|||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 121 AAAAATTATTATGGACTTGCCCCTGGTAAATCAGTCTTGCTTCGATACACTTTCCCAATC 180
Query 1951 AAGTGCACCAACGTTGTCTTTGCTAATGACACTGAAACCGTTTGTGAGATTCATGTGGAG 2010
|||||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||||
Sbjct 181 AAGTGCACCAACGTTGTCTTTGCTGATGACACTAAAACTGTTTGTGAGATTTATGTGGAG 240
Query 2011 TATGATCCTGAGAAAAAGATAAAGCCAAAGGGTGTTCTACACTGGGTCCCTGCATCTTCA 2070
|||||||| ||||| ||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 241 TATGATCCCGAGAAGAAGATAAAGCCAAAGGGTGTTCTACACTGGGTCCCTGAATATTCA 300
Query 2071 CCAGGAAAAGAGCCCATTAAGGTTGAAGTCCGTTCATTTGAGAACCTCTTTAATTCCGAG 2130
|||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 301 CCAGGAAAAGAGCCAACTAAGGTTGAAGTCTGTTCATTTGAGAACCTCTTTAACTCCGAG 360
Query 2131 AACCCAGCTGAACTCAATGATGATTGGCTCACCGACATTAACCCC-AACTCCAAAGTGGT 2189
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 361 AACCCAGCTGAACTCAATGATGATTGGCTCACTGACATTAACCCCCAACTCCAAAGTGGT 420
Score = 150 bits (81), Expect = 5e-35
Identities = 91/96 (95%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 2263 GGTTATTACACGGTTGACAAGGACTCTAAACCGGGAAAGCTTGTGTTTAACCGGACGGTC 2322
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 418 GGTTATTACACGGTTGACAAAGACTCTATCCCGGGAAAGCTTGTGTTTAACCGGACGGTC 477
Query 2323 ACGCTCAAAGACGGCTACAAGAAAGGTGGGAAATAG 2358
|| |||||||| ||||||||||||||||||||||||
Sbjct 478 ACACTCAAAGATGGCTACAAGAAAGGTGGGAAATAG 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117067670940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5