BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg893903 Length=2358 Score E Sequences producing significant alignments: (Bits) Value AT1G25350.2 | Symbols: OVA9 | glutamine-tRNA ligase, putative /... 1339 0.0 AT5G19720.1 | Symbols: | Ribosomal protein L25/Gln-tRNA synthe... 647 0.0 > AT1G25350.2 | Symbols: OVA9 | glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative | chr1:8889137-8894261 REVERSE LENGTH=2602 Length=2602 Score = 1339 bits (725), Expect = 0.0 Identities = 971/1091 (89%), Gaps = 11/1091 (1%) Strand=Plus/Plus Query 1270 TTCACACCCCATCCTCATACTGGTGAC-AGATGGCGTATCTATCCGACCTATGATTATGC 1328 ||| |||| |||||| | |||||||| || ||| |||||||||||| ||||||||||| Sbjct 1371 TTCGCACCTCATCCTAAGGCTGGTGACAAG-TGGTGTATCTATCCGAGTTATGATTATGC 1429 Query 1329 CCACTGCATTGTTGATTCTCTTGAAAATATAACACATTCGCTCTGCACTCTTGAATTTGA 1388 |||||||| ||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct 1430 CCACTGCACTGTTGATTCTCTTGAGAATATAACGCATTCGCTCTGTACTCTTGAATTTGA 1489 Query 1389 GACCAGACGTGCTTCTTACTATTGGTTATTACACTCGCTGGGTCTCTACATGCCGTATGT 1448 ||| | |||||||| ||||||||| | ||||| || ||| ||||||||||||| ||||| Sbjct 1490 AACCCGGCGTGCTTCATACTATTGGCTGTTACATTCCCTGAGTCTCTACATGCCATATGT 1549 Query 1449 GTGGGAGTATTCGCGGTTGAATGTCACAAACACTGTTATGTCCAAGCGTAAGCTGAACTA 1508 |||||| ||||| ||||||||||| ||||||||||| ||||||||||||||| |||| || Sbjct 1550 GTGGGAATATTCACGGTTGAATGTGACAAACACTGTAATGTCCAAGCGTAAGTTGAATTA 1609 Query 1509 CATTGTGACAAACAAGTATGTTGATGGTTGGGATGATCCACGTCTTTTAACACTTGCTGG 1568 ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 1610 CATAGTGACAAACAAGTATGTTGATGGTTGGGATGATCCACGTCTTTTGACACTTTCTGG 1669 Query 1569 TTTGAGGCGGAGAGGTGTAACTCCTACTGCGATTAATGCATTTGTACGAGG-ACTTGGAA 1627 |||||| ||||| ||||| ||| | |||||||||||||||||||||||||| | |||| | Sbjct 1670 TTTGAGACGGAGGGGTGTGACTTCAACTGCGATTAATGCATTTGTACGAGGCA-TTGGGA 1728 Query 1628 TTACCAGAAGTGATGGTAGCCTGATACATGTGAGTCGTCTTGAGCATCATATTAGAGAGG 1687 |||| ||||||||||||||| ||||||| || |||||||||||||||||||||||||||| Sbjct 1729 TTACTAGAAGTGATGGTAGCATGATACACGTAAGTCGTCTTGAGCATCATATTAGAGAGG 1788 Query 1688 AGTTGAATAAAACAGCTCCC-CGCACCATGGTGGTGCTGAATCCTCTTAAGGTGGTTATC 1746 | |||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||| ||| Sbjct 1789 AATTGAATAAAACAGC-CCCTCGCACCATGGTGGTGCTTAATCCTCTTAAAGTGGTCATC 1847 Query 1747 ACCAATTTGGAAGCAGACAAGGTTATGGAGCTTGATGCTAAAAGATGGCCTGATGCTCAG 1806 |||||||||||| |||||||| |||| ||||||||||| ||||| ||||||||||||||| Sbjct 1848 ACCAATTTGGAATCAGACAAGCTTATAGAGCTTGATGCCAAAAGGTGGCCTGATGCTCAG 1907 Query 1807 AACGATGATCCCTCAGCATTCTACAAGGTTGCGCTCTCTAGAGTTATATACATTGAGCAA 1866 ||||||||||||||||||||||||||||| || ||||||||||| |||||||||| ||| Sbjct 1908 AACGATGATCCCTCAGCATTCTACAAGGTACCGTTCTCTAGAGTTGTATACATTGACCAA 1967 Query 1867 TCTGACTTCCAAAAGGAGGATTCAAAAAATTATTTTGGACTTGCCCCTGGTAAATCAGCC 1926 |||||||||| || | ||||||||||| |||||| ||| || |||||||||||||| | Sbjct 1968 TCTGACTTCCGAATGAAGGATTCAAAAGATTATTATGGGCTCGCCCCTGGTAAATCTGTT 2027 Query 1927 TTGCTTCGATACGCTTTCCCAATCAAGTGCACCAACGTTGTCTTTGCTAATGACACTGAA 1986 ||||| |||| ||||||||||||||||||||||| |||||||||||| |||||| |||| Sbjct 2028 TTGCTAAGATATGCTTTCCCAATCAAGTGCACCAATGTTGTCTTTGCTGATGACAATGAA 2087 Query 1987 ACCGTTTGTGAGATTCATGTGGAGTATGATCCTGAGAAAAAGAT-AAAGCCAAAGGGTGT 2045 |||||| |||||||||||| ||| ||||| || ||||||||| | |||||||||||| || Sbjct 2088 ACCGTTCGTGAGATTCATGCGGAATATGACCCCGAGAAAAAG-TCAAAGCCAAAGGGGGT 2146 Query 2046 TCTACACTGGGTCCCTGCATCTTCACCAGGAAAAGAGCCCATTAAGGTTGAAGTCCG-TT 2104 ||||||||||||| ||| |||||| |||||| |||||||||| ||||| |||||||| || Sbjct 2147 TCTACACTGGGTCGCTGAATCTTCCCCAGGAGAAGAGCCCATAAAGGTGGAAGTCCGATT 2206 Query 2105 CATTTGAGAACCTCTTTAATTCCGAGAACCCAGCTGAACTCAATGATGATTGGCTCACCG 2164 ||||||||| |||||||| ||||||||||| |||||||||||||||| ||||||||| | Sbjct 2207 -ATTTGAGAAACTCTTTAACTCCGAGAACCCGGCTGAACTCAATGATGCTTGGCTCACTG 2265 Query 2165 ACATTAACCCCAACTCCAAAGTGGTAGTTTCTGATGCCTATGCTTTATCAACCATTAAAG 2224 |||||||||| ||||| ||| ||||| |||||| |||||||||| |||||||| |||||| Sbjct 2266 ACATTAACCCAAACTCTAAAATGGTAATTTCTGGTGCCTATGCTGTATCAACCCTTAAAG 2325 Query 2225 ATGCTGCCGTTGGGGACACATTCCAGTTCGAGAGGCTAGGTTATTACACGGTTGACAAGG 2284 ||||||| |||||||||| |||||| ||||||||||||||||||||| |||| ||||||| Sbjct 2326 ATGCTGCAGTTGGGGACAGATTCCAATTCGAGAGGCTAGGTTATTACGCGGTGGACAAGG 2385 Query 2285 ACTCTAAACCGGGAAAGCTTGTGTTTAACCGGACGGTCACGCTCAAAGACGGCTACAAGA 2344 ||||| | || |||||||||||||| |||||||||||||| |||| |||| ||||| || Sbjct 2386 ACTCTGAGCCAGGAAAGCTTGTGTTCAACCGGACGGTCACACTCAGAGACAGCTACGGGA 2445 Query 2345 AAGGTGGGAAA 2355 ||||||| ||| Sbjct 2446 AAGGTGG-AAA 2455 Score = 1042 bits (564), Expect = 0.0 Identities = 838/965 (87%), Gaps = 39/965 (4%) Strand=Plus/Plus Query 305 TTGAAGTTTCCCCAGAAGATATTGAGAAAACAGTCAAACAAATCTTTGAAGAAAATATGA 364 ||||||||||||||||||||||||||||| |||| ||| |||||||||||| |||| || Sbjct 415 TTGAAGTTTCCCCAGAAGATATTGAGAAAGCAGTTAAAGGAATCTTTGAAGAGAATAAGA 474 Query 365 AAACAATATTGGAGCAGCGGT-CCAGAACTAGTGTGGGTAAATTAACCGGACATGTCCGG 423 ||||||||||||||||||| | | |||||| ||||||| ||||| |||||||||||| Sbjct 475 AAACAATATTGGAGCAGCGCTATC-GAACTAATGTGGGTGAATTATTTGGACATGTCCGG 533 Query 424 AAAAGTTTGCCATGGGCAGATCCTGAGACTGTTAGGAGAGTCATAGAAGA-AAAACTGTA 482 ||||||||||||||||| |||||| ||| ||| | || | ||||||| || |||| |||| Sbjct 534 AAAAGTTTGCCATGGGCCGATCCTAAGATTGTAAAGAAACTCATAGATGAGAAAA-TGTA 592 Query 483 TGCA-TTGCTTGGCGAGAAAACAGCTGCTGACAATGAGAAACCTACAAAAAAGAAGGAGA 541 || | ||||||| |||||||| |||||||| ||||| |||||||||||||||||||||| Sbjct 593 TG-AGCTGCTTGGTGAGAAAACCGCTGCTGATAATGAAAAACCTACAAAAAAGAAGGAGA 651 Query 542 AGAAAGAGAAGCCCACCAAAGT--A-G---AGAAAGCTGTTTTGGAAGCTATCC-CACAT 594 |||| |||||||| ||||||| | | |||||||||| ||||| ||| || || | Sbjct 652 AGAAGGAGAAGCCTGCCAAAGTCGAGGAAAAGAAAGCTGTGGTGGAAACTA-CCGCAGAG 710 Query 595 CCATCTGAAGAGGAGCTTAATCCATATTCTATATTCCCTCAGCCA-AAGGAAAATCTTAA 653 ||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||| Sbjct 711 CCATCTGAAGAGGAGCTTAATCCATATACTATATTCCCTCAGCCAGAA-CAAAATTTTAT 769 Query 654 GGTTCACACAGAAGTGCTTTTCAGTGACGGCTCTGTGCTCATATGTAGCAATACCAAGGA 713 |||||||||||||||| |||||||||| |||||| | |||| |||||||||||| ||||| Sbjct 770 GGTTCACACAGAAGTGTTTTTCAGTGATGGCTCTATTCTCAGATGTAGCAATACAAAGGA 829 Query 714 AGTGCTTGACAAACATCTCAAGGTGACTGGAGGGAAAGTTTATACCCGGTTCCCTCCTGA 773 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 830 AGTACTTGACAAACATCTCAAGGTGACTGGAGGGAAAGTTTATACTCGGTTCCCCCCTGA 889 Query 774 ACC-AA------ATGG--TTA---TC---TCC-AT-ATAGGACATGCAAAGGCTATGTCT 816 ||| || |||| ||| || ||| || | | || | | ||||||||| | Sbjct 890 ACCAAATGGGCTATGGTTTTATGTTCGTTTCCAATGCTTGTAC-TTC-CAGGCTATGTTT 947 Query 817 GTTGATTTTGGTCTTGCAAAGGAGCGAGGGGGCTGGTGTTATCTGAGGTACGATGATACA 876 |||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||| Sbjct 948 GTTGATTTTGGTCTTGCAAAGGAGCGAGGGGGTTGCTGTTATCTAAGGTATGATGATACA 1007 Query 877 AATCCTGAGGCGGAAAAGAAAGAGTATATTAGTCACATTGAAGAAATTGTTAATTGGATG 936 ||||| ||||| |||||| |||||||||||| ||| ||||||||||||||||| |||||| Sbjct 1008 AATCCAGAGGCAGAAAAGGAAGAGTATATTAATCATATTGAAGAAATTGTTAAGTGGATG 1067 Query 937 GGTTGGGAACCCTTCAAGATTACATACACCAGTGATTATTTCCAAGAATTGTATGATTTG 996 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 1068 GGTTGGGAACCCTTCAAGATTACATACACCAGTGATTATTTCCAGGAACTGTATGATTTG 1127 Query 997 GCAGTGGAGTTGATTCGAAGAGGTCACGCTTATGTTGATCATCAGAAC-GCTGAGGAGAT 1055 ||||||||||||||||| |||||||| ||||||||||||||||||| | ||||| ||||| Sbjct 1128 GCAGTGGAGTTGATTCGGAGAGGTCATGCTTATGTTGATCATCAGA-CTGCTGATGAGAT 1186 Query 1056 AAAAGAGTACAGAGAGAACAAAATGAACAGCCCCTGGAGGGAAAGGCCTATTGAAGAATC 1115 |||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| Sbjct 1187 AAAAGAGTACAGAGAGAAGAAAATGAACAGCCCCTGGAGGGACAGACCTATTGAAGAATC 1246 Query 1116 TCTAGAGCTTTTTGACGAAATGAGACGAGGAATGATCGACGA-GGGAAAGGCCACACTAA 1174 |||| | |||||||| |||||||||||||| || || || || ||||| ||| || |||| Sbjct 1247 TCTAAAACTTTTTGATGAAATGAGACGAGGCATCATTGAGGAAGGGAA-GGCAACCCTAA 1305 Query 1175 GATTAAAGCAAGACATGAAGAGTGATAATTGTAATATGTATGACCTTATTGCCTATCGTA 1234 || | |||||||| ||| ||||||| |||| |||||||||||| |||||||||||||| | Sbjct 1306 GAATGAAGCAAGATATGCAGAGTGACAATTTTAATATGTATGATCTTATTGCCTATCGAA 1365 Query 1235 TAAAG 1239 ||||| Sbjct 1366 TAAAG 1370 > AT5G19720.1 | Symbols: | Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain | chr5:6667664-6668587 FORWARD LENGTH=513 Length=513 Score = 647 bits (350), Expect = 0.0 Identities = 397/420 (95%), Gaps = 1/420 (0%) Strand=Plus/Plus Query 1771 ATGGAGCTTGATGCTAAAAGATGGCCTGATGCTCAGAACGATGATCCCTCAGCATTCTAC 1830 |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 1 ATGGAGCTTGATGCTAAAAGATGGCCTGATGCTCCGAATGATGATCCCTCAGCATTCTAC 60 Query 1831 AAGGTTGCGCTCTCTAGAGTTATATACATTGAGCAATCTGACTTCCAAAAGGAGGATTCA 1890 |||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 61 AAGGTTCCGCTCTCTAGAGTTATATACATGGAGCAATCTGACTTCCAAAATGAGGATTCG 120 Query 1891 AAAAATTATTTTGGACTTGCCCCTGGTAAATCAGCCTTGCTTCGATACGCTTTCCCAATC 1950 |||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 121 AAAAATTATTATGGACTTGCCCCTGGTAAATCAGTCTTGCTTCGATACACTTTCCCAATC 180 Query 1951 AAGTGCACCAACGTTGTCTTTGCTAATGACACTGAAACCGTTTGTGAGATTCATGTGGAG 2010 |||||||||||||||||||||||| |||||||| |||| |||||||||||| |||||||| Sbjct 181 AAGTGCACCAACGTTGTCTTTGCTGATGACACTAAAACTGTTTGTGAGATTTATGTGGAG 240 Query 2011 TATGATCCTGAGAAAAAGATAAAGCCAAAGGGTGTTCTACACTGGGTCCCTGCATCTTCA 2070 |||||||| ||||| ||||||||||||||||||||||||||||||||||||| || |||| Sbjct 241 TATGATCCCGAGAAGAAGATAAAGCCAAAGGGTGTTCTACACTGGGTCCCTGAATATTCA 300 Query 2071 CCAGGAAAAGAGCCCATTAAGGTTGAAGTCCGTTCATTTGAGAACCTCTTTAATTCCGAG 2130 |||||||||||||| | ||||||||||||| |||||||||||||||||||||| |||||| Sbjct 301 CCAGGAAAAGAGCCAACTAAGGTTGAAGTCTGTTCATTTGAGAACCTCTTTAACTCCGAG 360 Query 2131 AACCCAGCTGAACTCAATGATGATTGGCTCACCGACATTAACCCC-AACTCCAAAGTGGT 2189 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 361 AACCCAGCTGAACTCAATGATGATTGGCTCACTGACATTAACCCCCAACTCCAAAGTGGT 420 Score = 150 bits (81), Expect = 5e-35 Identities = 91/96 (95%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 2263 GGTTATTACACGGTTGACAAGGACTCTAAACCGGGAAAGCTTGTGTTTAACCGGACGGTC 2322 |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 418 GGTTATTACACGGTTGACAAAGACTCTATCCCGGGAAAGCTTGTGTTTAACCGGACGGTC 477 Query 2323 ACGCTCAAAGACGGCTACAAGAAAGGTGGGAAATAG 2358 || |||||||| |||||||||||||||||||||||| Sbjct 478 ACACTCAAAGATGGCTACAAGAAAGGTGGGAAATAG 513 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 117067670940 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5