BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg893922

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G19910.2 | Symbols: MED31 | SOH1 family protein | chr5:67312...   512    1e-144


> AT5G19910.2 | Symbols: MED31 | SOH1 family protein | chr5:6731236-6732990 
REVERSE LENGTH=1098
Length=1098

 Score =  512 bits (277),  Expect = 1e-144
 Identities = 309/324 (95%), Gaps = 3/324 (1%)
 Strand=Plus/Plus

Query  1    ATGGCTTCATCAGAGGAGAT---TGATGATACATCAGAAATTCCATCCCCGCCAAAGAAC  57
            ||||||||  ||||||||||   ||||||| ||||||||||||||||||||||||| |||
Sbjct  170  ATGGCTTCGCCAGAGGAGATGGGTGATGATGCATCAGAAATTCCATCCCCGCCAAAAAAC  229

Query  58   ACTTACAAGGATCCCGACGGTGGAAGACAACGATTCTTACTCGAACTTGAATTCATTCAA  117
            |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct  230  ACTTACAAGGATCCCGACGGTGGAAGGCAACGATTCTTACTGGAACTTGAATTTATTCAA  289

Query  118  TGTCTCGCCAATCCTACTTACATCCACTACCTGGCACAGAATCGGTATTTTGAAGATGAA  177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  290  TGTCTCGCCAATCCTACTTACATCCACTACCTGGCACAGAATCGGTATTTTGAAGATGAA  349

Query  178  GCATTTATTGGATACTTGAAGTATCTTCAATACTGGCAGCGACCTGAATACATCAAGTTC  237
            |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  350  GCATTTATTGGATACTTGAAGTATCTTCAATACTGGCAGCGACCAGAGTACATCAAGTTC  409

Query  238  ATTATGTACCCACACTGCTTATATTTCCTTGAACTTCTTCAAAACCCCAACTTTAGGACT  297
            |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct  410  ATTATGTACCCACACTGCCTATATTTCCTTGAACTTCTTCAAAACCCCAACTTCAGGACT  469

Query  298  GCTATGGCCCATCCTGCAAACAAG  321
            |||||||| |||||||||||||||
Sbjct  470  GCTATGGCTCATCCTGCAAACAAG  493


 Score =  433 bits (234),  Expect = 1e-120
 Identities = 257/268 (96%), Gaps = 2/268 (1%)
 Strand=Plus/Plus

Query  322  GAATTGGCACATAGACAACAGTTTTACTATTGGAAGAACTACAGAAACAACAGGCTGAAG  381
            |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  584  GAATTGGCGCATAGACAACAGTTTTACTATTGGAAGAACTACAGAAACAACAGACTGAAG  643

Query  382  CACATTCTACCTCGGCCTCTTCCAGAGCCTATAGCC-CCACAACCACCAGTTGCACCTTC  440
            |||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct  644  CACATTCTACCTCGGCCTCTTCCAGAGCCTGTA-CCTCCACAACCACCAGTTGCACCTTC  702

Query  441  AACTTCTTTGCCACCTGCTCCATCTGCAGCTGCTGCTCTCTCTCCAGCCCTTTCTCCAAT  500
            |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct  703  AACTTCTTTGCCACCTGCACCATCTGCAACTGCTGCTCTCTCTCCAGCCCTTTCTCCAAT  762

Query  501  GCAGTACAATAATATGCTTTCTAAGAATGACACGAGGAATATGGGTGCTGCTGGAATTGA  560
            ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct  763  GCAGTACAATAATATGCTTTCTAAGAATGACACTAGGAATATGGGTGCTACTGGAATTGA  822

Query  561  TCGTAGGAAAAGAAAGAAGGGTACATAA  588
            ||||||||| ||||||||||||| ||||
Sbjct  823  TCGTAGGAAGAGAAAGAAGGGTATATAA  850



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28281824761


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5