BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893963
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20310.1 | Symbols: | Adenine nucleotide alpha hydrolases-l... 1707 0.0
> AT5G20310.1 | Symbols: | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr5:6857553-6859145 FORWARD LENGTH=1329
Length=1329
Score = 1707 bits (924), Expect = 0.0
Identities = 1105/1190 (93%), Gaps = 22/1190 (2%)
Strand=Plus/Plus
Query 16 GAGAGAAATGAAGTAAGGGAAGGGCCTATAGCTATTGCAATTGATAGAGATAAAACAACA 75
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 4 GAGAGAAATGAAGTAAGGGAAGGGCCTATAGCTATTGCAATTGACAGAGATAAAACAACA 63
Query 76 AGCTGCCAAGCTCTTAAATGGGCTGTCGATCATTATATACCCCGAGGCGGGACTGTCAAA 135
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 64 AGCTGCCAAGCTCTTAAATGGGCTGTCGATCATTATATACCTCGAGGCGGGACTGTAAAA 123
Query 136 CTCGTGCATGTCGTCCAAAGATCTGCTTTGAATAATGCAAATGGATCTTACAACACAGAT 195
||||| |||||| ||||||||||||||||||||| | | |||||||| | | ||||||||
Sbjct 124 CTCGTTCATGTCATCCAAAGATCTGCTTTGAATATTTCTAATGGATC-T-C-ACACAGAT 180
Query 196 GATGAATCATCTGATAGACCACA-CAATGATAAACGGA-G--CACTCTGTTTCTTCCATT 251
|||||||||||||| ||| || | |||||||||||||| | | ||| ||||||||||||
Sbjct 181 GATGAATCATCTGAAAGA-CAAAGCAATGATAAACGGACGACCGCTCAGTTTCTTCCATT 239
Query 252 GCGTTGTCTTTGTATGCGAAGAAATATACAAAGCGAAGTAGTTTTGCTGGAAGATCAAGA 311
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 GCGCTGTCTTTGTATGCGAAGAAATATACAAAGCGAAATAGTTTTGCTGGAAGATCAAGA 299
Query 312 TGTGGCAAAAGCCCTGATTGAATATATTAGCCAGAATTGTATTTCCACATTC-TTACTAG 370
||| || |||||| |||| ||||||||||||||||||||||||||||||||| || ||||
Sbjct 300 TGTAGCGAAAGCCTTGATCGAATATATTAGCCAGAATTGTATTTCCACATTCATT-CTAG 358
Query 371 GTGCCTCGTTGAAGAAGAGCATTACCAGGCTGTTCAAGGCTGATGACATTCCAAGTAATG 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTGCCTCGTTGAAGAAGAGCATTACCAGGCTGTTCAAGGCTGATGACATTCCAAGTAATG 418
Query 431 TGATGAGATGGGCTCCAGACTTCTGCAGTGTATTAGTCATATCAAAGGGAAGACTATCAA 490
||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||
Sbjct 419 TGATGAGATGGGCTCCAGACTTCTGCACTGTATTAGTTTTATCAAAGGGAAGACTTTCAA 478
Query 491 GTGTACGATCAGCCACTCGGCCTTTACCTCAAGCCTTGCCATCTTCTTCTTCAGGGACTG 550
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 479 GTGTACGGGCAGCCACTCGGCCTTTACCTCAAGTCTTGCCATCTTCTTCTTCAGGGACTG 538
Query 551 CACCATTGTCACCACGCAGCAACGCCGATGAGGCTCCCTCTGAGATGTCATTGTCAAGAG 610
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 539 CACCTTTGTCACCACGCAGCAACGGCGATGAGGCTCCCTCTGAGATGTCATTGTCAAGAG 598
Query 611 AGGACGACGTTTTCTTTGAGGAGTTTTTATCCCTTGACCCAGATTCTAGTGTGAACATTA 670
| |||||||||||| |||| ||||||| |||| ||||| |||||||||||||||||||||
Sbjct 599 AAGACGACGTTTTCCTTGAAGAGTTTTCATCCGTTGACTCAGATTCTAGTGTGAACATTA 658
Query 671 GTAGCAGGTTCAGTACAGACAGTTCGGTTCTCTCCTTCTATGAGAAACTTGCAGCTCCAC 730
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 659 GTAACAGGTTCAGTACAGACAGTTCGGTTCTCGCCTTCTATGAGAAACTTGCAGCTCCAC 718
Query 731 ACATGTTGGATATTCCTAGATTCTCTGGTCTGGATGATGAAAAAGCCAGGTTTTCTATCT 790
||||||||| |||||||||||||||| ||| |||||||| ||||||| |||||| ||||
Sbjct 719 CCATGTTGGAGATTCCTAGATTCTCTGTTCTTGATGATGAGAAAGCCAAGTTTTCCATCT 778
Query 791 ATCTTAATAGTCCTTCTGATGAAAAGAATTGTACCTTAGCTTCCCCACTATCACCAA-CG 849
|||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| ||
Sbjct 779 ATCTTAATAGTCTTTCTGATGAAAAGAATTGTACATTAGCTTCCCCATTATCACCAGTCG 838
Query 850 GATGACGCCGA-GGCTGAGATGAGGAGGCTGAAGAAAGAGCTGAAGGAAACGATGAACAT 908
||||||| | |||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 839 -ATGACGCT-ACGGCTGAGATGAGAAGGCTGAAGAAAGAGCTCAAGGAAACGATGAACAT 896
Query 909 GTACCACGCCGCTTGCAAAGAAGCTCTTATGGAAAAAGAAAGAGCGGTAGAGCTTGAGAT 968
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 897 GTACCACGCCGCTTGCAAAGAAGCTCTTATGGAAAAAGAAAGAGCAGTAGAGCTTGTGAT 956
Query 969 GTGGAAAAGGAAAGCAGAGCTAAGGATTCAAATGGCTGAAGATACAACAACAATGGC-A- 1026
|||||||| ||||||||| ||||||||||||||||||||||| ||| ||| |||||| |
Sbjct 957 GTGGAAAAAGAAAGCAGAACTAAGGATTCAAATGGCTGAAGAAACAGCAAGAATGGCTAT 1016
Query 1027 ---G-AGATGAAGTCGGTGAAAGGGAAAGAGAGTGATGACGGAAAGATGGTTTGGGATAC 1082
| |||||||| ||||||||||||||| |||||||||| |||||||||| ||||||||
Sbjct 1017 CATGGAGATGAAGGCGGTGAAAGGGAAAGGGAGTGATGACAGAAAGATGGTATGGGATAC 1076
Query 1083 TCTTGGAGAGTCTCAT-CTTGTGGTTAAACATGAGAGCTTGCTCCATATTTTAGTTGTAC 1141
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 1077 TCTTGGAGAGTCTCATACT-GTGGTTAAACATGAGAGCTTGCTCCATATTTTAGTTGTGC 1135
Query 1142 TTTTCTTGTTTTATATTTATTTCACACTAAGAAAATTCTATTTCTTGTGA 1191
||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1136 TTTTCTTGTTTTATATTTATTTCACACTAAGAAAACTCTATTTCATGTGA 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58483634925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5