BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893976
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein ki... 893 0.0
AT5G24910.1 | Symbols: CYP714A1 | cytochrome P450, family 714, ... 274 1e-72
> AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr5:26216126-26218153 REVERSE LENGTH=2028
Length=2028
Score = 893 bits (483), Expect = 0.0
Identities = 571/614 (93%), Gaps = 4/614 (1%)
Strand=Plus/Plus
Query 601 GCAGCGAAAGAAAGAG-TTTTATATGAAGTTAAGATCATCAGCAAACTGAGACATCGAAA 659
|||| ||||||| ||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1158 GCAGGGAAAGAACGAGTTTTTAAACGAAGTTAAGATCATCAGCAAACTGAGACATCGAAA 1217
Query 660 CATGGTGCAACTCATTGGTTGGTGTAATGaaaaaaaCGAGTTCTTGCTGATATATGAGTT 719
| | ||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1218 CCTCGTGCAGCTCATCGGTTGGTGTAATGAGAAAAATGAGTTCTTGCTGATATATGAGTT 1277
Query 720 AGTGCTAAATGGTAGCTTGAACTCCCACCTCTTTGGCAAAAGACCCCATTTACTTTCTTG 779
||| | |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||
Sbjct 1278 AGTTCCAAATGGTAGCTTGAACTCTCACCTCTTTGGGAAAAGACCCAATTTACTTTCTTG 1337
Query 780 GGACATAAGGTACAAGATAGCTCTTGGTTTAGCCTCTGCTCTGCTTTATCTTCATGAAGA 839
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1338 GGACATAAGGTACAAGATAGGTCTTGGTTTAGCCTCTGCTCTGCTTTATCTTCATGAAGA 1397
Query 840 ATGGGATCAATGTGTACTGCACAGAGACATCAAAGCAAGCAATATAATGCTTGACAGTGA 899
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1398 ATGGGATCAATGTGTACTGCACAGAGACATCAAGGCAAGTAATATAATGCTTGACAGTGA 1457
Query 900 TTTCAATGTAAAGTTAGGTGATTTCGGTTTGGCTCGGGTTATGAACCATGAACATGGTTC 959
|||||||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||
Sbjct 1458 ATTCAATGTAAAGTTAGGTGATTTCGGGTTGGCTCGGCTAATGAACCATGAACTTGGTTC 1517
Query 960 CCATACAACAGGATTGGCTGGAACTTTTGGGTACATGGCACATGAATATGTAACGAAAGG 1019
||||||||| || |||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1518 CCATACAACGGGGTTGGCTGGAACTTTTGGGTACATGGCACCTGAATATGTAATGAAAGG 1577
Query 1020 AAGTGCGAGTAAAGAGTCTGATATATATAGCTTTGGAATTGTTTTACTAGAGATTGTCAC 1079
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 AAGTGCGAGTAAAGAATCTGATATATATAGCTTTGGAATTGTTTTACTAGAGATTGTCAC 1637
Query 1080 AGGGAGAAAATCGCTGGAACGAACGCAAGAAGATAACAGTGATTCAGAGAGT-A--ATGA 1136
||||||||||||||||||||| || |||||||||||||||||| |||||||| | ||||
Sbjct 1638 AGGGAGAAAATCGCTGGAACGTACACAAGAAGATAACAGTGATACAGAGAGTGATGATGA 1697
Query 1137 GAAGAGTCTTGTGGAGAAAGTTTGGAAACTTTATGGAAAACAAGAAGTGATGACTTCGTC 1196
||||||||| ||||||||||||||| | |||||||||||||||||| |||| ||||| |
Sbjct 1698 GAAGAGTCTAGTGGAGAAAGTTTGGGAGCTTTATGGAAAACAAGAACTGATCACTTCATG 1757
Query 1197 TGTTGATGAGAAAT 1210
||||||||| ||||
Sbjct 1758 TGTTGATGACAAAT 1771
Score = 429 bits (232), Expect = 3e-119
Identities = 312/349 (89%), Gaps = 12/349 (3%)
Strand=Plus/Plus
Query 262 GAGAAGTTCAAGCCTTTCTTACATCATCGACCTCGC-AA------ACCATCAGAAGTAAT 314
||| |||||||||||||||||||||||||||||||| || |||||||| || ||
Sbjct 685 GAG-AGTTCAAGCCTTTCTTACATCATCGACCTCGCTAAGGTTCTGCCATCAGATGTTAT 743
Query 315 GTTCGGGTTTATAGCTGCTGCTGGAACAAACACAGAGGAACATAGACTTTTATCATGGGA 374
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 744 GTTCGGGTTTATAGCTGCCGCTGGGACAAACACAGAGGAACATAGACTTTTATCATGGGA 803
Query 375 GCTCAGTTCAAATTTGGATATCGAGAAAGCCGATAGCAAGATAGGATTGGTAGTTGGCAT 434
||||||||||| |||||| | ||| ||||||||||||| ||||||| | ||| |||||||
Sbjct 804 GCTCAGTTCAAGTTTGGACAGCGACAAAGCCGATAGCAGGATAGGACTAGTAATTGGCAT 863
Query 435 TTCGGTTTCCGGGTTTGTTTTACTGATAGTTT-TGGTCCA-CACGATCGTGGTGGTTTGG 492
||||| ||||||||||||||| |||| |||| ||||| | ||| | |||||||||||||
Sbjct 864 TTCGGCTTCCGGGTTTGTTTTTCTGAC-GTTTATGGTC-ATCACAACCGTGGTGGTTTGG 921
Query 493 TCACGGAAGCAAAGAAAAAAGAAGGACAGAGATATAGCAAACATGATATCGATAAACGAA 552
||||||||||||||||| ||||| || |||||||||| ||||||||||||||||||| ||
Sbjct 922 TCACGGAAGCAAAGAAAGAAGAAAGAAAGAGATATAGAAAACATGATATCGATAAACAAA 981
Query 553 GATCTTGAAAGGGAAGCAGGACCAAGAAAGTTTTCTTATAAAGATCTTG 601
|| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 982 GACCTTGAAAGGGAAGCAGGACCAAGAAAGTTTTCTTATAAGGATCTTG 1030
> AT5G24910.1 | Symbols: CYP714A1 | cytochrome P450, family 714,
subfamily A, polypeptide 1 | chr5:8567581-8570358 REVERSE
LENGTH=1790
Length=1790
Score = 274 bits (148), Expect = 1e-72
Identities = 166/174 (95%), Gaps = 4/174 (2%)
Strand=Plus/Plus
Query 80 AGATGTCTTCAAAAGGCCATCACTCACAACAACATCCTCTTCA-CCTCAATGGCTT--CT 136
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 822 AGATGTCTTCAAAAGGCCATCACTCACAACAACATCCTCTTCAGCCTCAATGGCTTCACT 881
Query 137 -ATGTTGTGTTCGGGACTAAGAAGCATGGGAACGGGAAGATTGATGAGCTAGAGAGGCAT 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 882 GATGTTGTGTTCGGGACTAAGAAGCATGGGAACGGGAAGATTGATGAGCTAGAGAGACAC 941
Query 196 ATTGAGTCTTTGATATGGGAAACTGTTAAGGAAAGAGAAAGGGAATGTGTGGGA 249
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 942 ATTGAGTCTTTGATATGGGAAACCGTTAAAGAAAGAGAAAGGGAATGTGTGGGA 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59537846370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5