BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893979
Length=468
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20440.1 | Symbols: | Mob1/phocein family protein | chr5:69... 617 2e-176
AT5G20430.1 | Symbols: | Mob1/phocein family protein | chr5:69... 457 5e-128
> AT5G20440.1 | Symbols: | Mob1/phocein family protein | chr5:6908646-6909996
FORWARD LENGTH=651
Length=651
Score = 617 bits (334), Expect = 2e-176
Identities = 421/461 (91%), Gaps = 13/461 (3%)
Strand=Plus/Plus
Query 1 ATGAACACTGTAGATTTCTACAAACAAATAAGCCTTTTGTATGCTACTCTTGAAGAGTTC 60
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGAACACTGTAGATTTCTTCAACCAAATAAGCCTTTTGTATGCTACTCTTGAAGAGTTC 240
Query 61 TGCACACCCACCACTTGCCCAGTTATGAATGCTGGAAGATATGAGTATAGATGGGCAGAT 120
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGCACACAGACCACTTGTCCAGTTATGAATGCTGGAAGATATGAGTATAGATGGGCAGAT 300
Query 121 GGAA-TAACTGTA-CTTGAGCCTAAAATGGTTTCAGCCCCTGAATATGTTGAGTGTCTCA 178
|||| || || || || |||| |||| ||||||||||||| |||||||||||| |||||
Sbjct 301 GGAACTA-CTATAACTA-AGCCAAAAACGGTTTCAGCCCCTAAATATGTTGAGTATCTCA 358
Query 179 T-GAATTGGATTGAAACTCAGATCGATAACGAAATCATCTTTCCGAAAAATCCTGGAGAA 237
| || |||| |||||||| |||||||||||||| |||||| |||||||| |||||||||
Sbjct 359 TTGA-TTGGGTTGAAACTGAGATCGATAACGAAGCCATCTTCCCGAAAAACCCTGGAGAA 417
Query 238 CCATTCCCTTCAAACTTTGAGGATTTCGTGAAGCGGATTTTGAGAAAGGTGTTTCGTGTC 297
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 418 CCATTCCCTCCAAACTTTGAGGATTTCGTGAAGCGGATTTTGAGAAAGTTGTTTCGTGTC 477
Query 298 TATGCACACATCTATTATTCTCACTTT-ATTAAGATTGTGACTCTCAATGAACATGCTCA 356
||||||||||||||||||||||||||| || | ||||||| ||||||| ||||| |||||
Sbjct 478 TATGCACACATCTATTATTCTCACTTTCATGA-GATTGTGGCTCTCAACGAACAAGCTCA 536
Query 357 TCTCAACACTTGCTTCAAGCATTTTCTTCTCTTTGTATCTGAGTTCCAGTTGGTTGATAA 416
|||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 537 TCTCAACACTTGTTTCAAGCATTTTCTTCTATTCGTATCTGAGTTCCAGTTGGTTGATAA 596
Query 417 AGAA---GAGATGGCTCCTATTAAA-GATCTCGTGGAAACT 453
|||| |||||||||||||||||| | ||| |||||||||
Sbjct 597 AGAAAAAGAGATGGCTCCTATTAAAAG-TCTAGTGGAAACT 636
> AT5G20430.1 | Symbols: | Mob1/phocein family protein | chr5:6904705-6905391
FORWARD LENGTH=369
Length=369
Score = 457 bits (247), Expect = 5e-128
Identities = 344/387 (89%), Gaps = 21/387 (5%)
Strand=Plus/Plus
Query 85 ATGAATGCTGGAAGATATGAGTATAGATGGGCAGATGGAATAACTGTACTTGAGCCTAAA 144
||||| |||||||||||||||||| ||||||||||||| | || | | ||
Sbjct 1 ATGAAGGCTGGAAGATATGAGTATCGATGGGCAGATGG----A----AC-T-A--CT--- 45
Query 145 ATGGTTTCAGCCCCTGAATATGTTGAG-TGTCTCATGAATTGGATTGAAACTCAGATCGA 203
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||
Sbjct 46 ATGGTTTCAGCCCCTGAATATGTTGAGCT-TCTCATGAATTGGATTGAAACTCAGATAGA 104
Query 204 TAACGAA-ATCATCTTTCCGAAAAATCCTGGAGAACCATTCCCTTCAAACTTTGAGGATT 262
||||||| | ||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 105 TAACGAACA-CATCTTTCCGAAAAAGACTGGAGAACCATTCCCTCCAAACTTTGAGGATT 163
Query 263 TCGTGAAGCGGATTTTGAGAAAGGTGTTTCGTGTCTATGCACACATCTATTATTCTCACT 322
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 164 TCGTGAAGCGGATTTTGAGAAAGTTGTTTCGTGTCTATGCACACATCTATCATTCTCACT 223
Query 323 TTATTAAGATTGTGACTCTCAATGAACATGCTCATCTCAACACTTGCTTCAAGCATTTTC 382
|| ||||||||| |||||||||||||| ||||||||||||||||||||| | | || |
Sbjct 224 TTCCTAAGATTGTCACTCTCAATGAACAAGCTCATCTCAACACTTGCTTCCACCGTTACC 283
Query 383 TTCTCTTTGTATCTGAGTTCCAGTTGGTTGATAAAGAAGAGATGGCTCCTATT-AAAGAT 441
||||||| |||||||||||||||||||||||||||||||| |||| ||||||| ||| |
Sbjct 284 TTCTCTTCGTATCTGAGTTCCAGTTGGTTGATAAAGAAGAAATGGTTCCTATTCAAA-AG 342
Query 442 CTCGTGGAAACTGTTTTGAAACCATAG 468
|||||||||||| ||||||||||||||
Sbjct 343 CTCGTGGAAACTATTTTGAAACCATAG 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22253727121
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5