BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893998
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT5G20635.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1181 0.0
> AT5G20635.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
keratin filament, chloroplast; CONTAINS InterPro DOMAIN/s: Keratin,
high sulphur B2 protein (InterPro:IPR002494); Has 6153
Blast hits to 2882 proteins in 265 species: Archae - 6; Bacteria
- 47; Metazoa - 4777; Fungi - 68; Plants - 187; Viruses
- 30; Other Eukaryotes - 1038 (source: NCBI BLink). | chr5:6979213-6981935
REVERSE LENGTH=1025
Length=1025
Score = 1181 bits (639), Expect = 0.0
Identities = 721/759 (95%), Gaps = 12/759 (2%)
Strand=Plus/Plus
Query 1 ATGTCTGCTCCTTCTGGCGGTGACGGAGGAGGAGG---AGAATCAGCTGC---TGGAGTG 54
|||||||||||||||||||||| || ||||||||| |||||||||||| |||||||
Sbjct 169 ATGTCTGCTCCTTCTGGCGGTGGCGAAGGAGGAGGAAAAGAATCAGCTGCTGGTGGAGTG 228
Query 55 AGTTCGTCGTCTCTTGCTCCGTCGTCTCTACCGCCGCCTCGTCCTAAGTCTCCGCCGGAG 114
||||| |||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 229 AGTTCATCGTCTCTTGCTCCGTCGTCTCTACCACCGCCTCGTCCTAAGTCTCCACCAGAG 288
Query 115 TATCCAGATTTGTACGGGAAACGCAGAGAGGCGGCGAGAGTTCAGATGCTCTCGAGAGAG 174
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 289 TATCCAGATTTGTACGGGAAACGCAGAGAGGCGGCGAGAGTTCAGATGCTCGAGAGAGAG 348
Query 175 ATTGGTTTTCTCGAGGGGGAAATTAAATTCACT-GAAGGCGTACAACCGGCTTCTAGATG 233
||||||||||||||||| ||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 349 ATTGGTTTTCTCGAGGGCGAAATTAAATTCA-TCGAAGGCGTACAACCGGCATCTAGATG 407
Query 234 C-TGCAAAGAGGTCTCTGATTTTGTTGTTGCAAATTCTGACCCATTGATCCCTGCACAAC 292
| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 CAT-CAAAGAAGTCTCTGATTTTGTTGTTGCAAATTCTGACCCATTGATCCCTGCACAAC 466
Query 293 GAAAGAGTCGAAGAT-CTTGCCGGTTTTGGAAGTGGCTTTGTGGCCCATGTTTGAGCCTG 351
|||| |||||||||| ||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct 467 GAAAAAGTCGAAGATCCTT-CCGGTTCTGGAAGTGGCTCTGTGGCCCATGTTTGAGCCTG 525
Query 352 GTGAGTTTCTGCTGTTGCTGCCAATCCAAATGTTCGTGCCATCTGAAGAAACCCAAGTGC 411
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 526 GTGAGTTTCTGCTGTTGCTGCCAATCCAAATGTTCGTGCCATCTGAGGAAACCCAAGTGC 585
Query 412 TGCAACTGTACATCTTGCAGCTGTATTGGGTCCAAATGCTGCGACAGGTCGTGCTGCTCA 471
|||||||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||
Sbjct 586 TGCAACTGTACATCTTGCAGCTGTATAGGGTCCAAATGCTGTGACGGGTCATGCTGCTCA 645
Query 472 AACATTTGTTGTTGCCCGAGACCAAGCTGCCCGAGCTGTTCATGCTTCCGAGGTTGCTGC 531
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 646 AACATTTGTTGTTGCCCGAGACTAAGCTGCCCGAGCTGTTCATGCTTCCGAGGTTGCTGG 705
Query 532 TGTTCATGTCCGGACATGTCTTGCTGCATTCCCAGCTGTTTCCGCAACTGCAGTTGCACT 591
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 706 TGTTCTTGTCCGGACATGTCTTGCTGCATTCCCAGCTGTTTCCGCAGTTGCAGTTGCACT 765
Query 592 CGACCGTCGTGTCTGAATAAAAAGAAGAGCTCATGCTGCAGCTGCAACTGCAAGATCAGA 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 CGACCGTCGTGTCTGAATAAAAAGAAGAGCTCATGCTGCAGCTGCAACTGCAAGATCAGA 825
Query 652 TGGTCATCTTGTTTTAGATGTCCCAAGGTACGACTTTGTTCTTGTTGTTTTTGCAATTGT 711
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TGGTCATCTTGTTTTAGTTGTCCCAAGGTACGACTTTGTTCTTGTTGTTTTTGCAATTGT 885
Query 712 AAAAATCTATGTTCTAATCCTTGTTGTTTAGCATTCTAA 750
|||||||||||||||||||||||||||||||| ||||||
Sbjct 886 AAAAATCTATGTTCTAATCCTTGTTGTTTAGCTTTCTAA 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5