BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894018
Length=234
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22250.2 | Symbols: ATAAT, AAT, MEE17 | aspartate aminotrans... 385 1e-106
> AT2G22250.2 | Symbols: ATAAT, AAT, MEE17 | aspartate aminotransferase
| chr2:9457810-9460412 REVERSE LENGTH=1744
Length=1744
Score = 385 bits (208), Expect = 1e-106
Identities = 224/232 (97%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 3 CTTCAGTGCTTACTATGGATCAAAAGCTGAAGGTTTTGGTTTGATCAATGATTCGTCGTC 62
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1312 CTTCAGTGCTTACTATGGATCAGAAGCTGAAGGTTTTGGTTTGATCAATGATTCGTCGTC 1371
Query 63 TCTTGCATTATACTTTCTTGACAAGTTTCAGGTTGCAATGGTTCCTGGTGATGCTTTTGG 122
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 TCTTGCACTATACTTTCTTGACAAGTTTCAGGTTGCAATGGTTCCTGGTGATGCTTTTGG 1431
Query 123 AGATGATAGTTGTATCCGAATATCTTATGCCACATCTCTCGACGTTCTACAAGCCGCAGT 182
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 1432 AGATGATAGTTGTATCCGAATATCTTATGCCACATCTCTCGACGTTCTTCAAGCAGCTGT 1491
Query 183 TGAGAAGATCAGGAAAGTCCTTGAGCCACTTCGTGCCACTGTCTCCGTGTAA 234
||||||||||||||||| |||||||||||| ||||||||||||||||| |||
Sbjct 1492 TGAGAAGATCAGGAAAGCCCTTGAGCCACTCCGTGCCACTGTCTCCGTTTAA 1543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10556227290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5