BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894037
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21040.1 | Symbols: FBX2 | F-box protein 2 | chr5:7144922-71... 2416 0.0
> AT5G21040.1 | Symbols: FBX2 | F-box protein 2 | chr5:7144922-7147129
REVERSE LENGTH=1975
Length=1975
Score = 2416 bits (1308), Expect = 0.0
Identities = 1469/1548 (95%), Gaps = 5/1548 (0%)
Strand=Plus/Plus
Query 50 ATTTGAGAATA-G-AA-AATGGGTCTGTTGAGATTCCAAGTGTGAAGTTGTCTTGTCAGC 106
||||||||||| | || ||||||||||||||||||||| ||||||||||| |||||||
Sbjct 293 ATTTGAGAATAGGTAATGATGGGTCTGTTGAGATTCCAAATGTGAAGTTGTGTTGTCAGA 352
Query 107 AAAAGAAGGGAACTTTGGTGCCTAGTGGATCGAAACAGTTGCTCTCTGACAAGGATTTGT 166
|||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 353 AAAAGAAGGGAACTTTAGTGCCCAGTGGCTCGAAACAGTTACTCTCTGACAAGGATTTGT 412
Query 167 CTACTACCATTATTGATTTGCCTCAGGCATTGATATCTGAGATTCTTAATTGCCTTGACC 226
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CTACTACCATTATTGATTTACCTCAGGCATTGATATCTGAGATTCTTAATTGCCTTGACC 472
Query 227 CAAAGGAGTTAGGTTTAGTGTCCTGTGTTTCAACTTGTCTGCATAAGTTAGCATCTGAGC 286
|||| ||||| ||| ||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 473 CAAAAGAGTTGGGTCTAGTGTCTTGTGTTTCAACTTATCTGCATAGGTTAGCATCTGAGC 532
Query 287 ATCACGCTTGGAAGGAGTTCTATCGTGAGAGATGGGGACTCCCCGTTGTTTTCGGAGCTA 346
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 533 ATCACGCTTGGAAGGAGTTCTATCGTGAGAGATGGGGACTCCCTGTAGTTTTCGGAGCTG 592
Query 347 CAAGTTCAGGGCTTTCTGATGAGAGATCATGGAAAGAGCTGTTTGCTGAAAGGGAATTTA 406
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 593 CAAGTTCAGGGCTTTCTGATGAGAGATCATGGAAAGATCTGTTTGTTGAAAGGGAATTTA 652
Query 407 GGAGTAGGAACTTTTTAGGACGTTTTAGTATTGATACTCTGTATGGTCACACTGAAGCAG 466
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 653 GGAGTAGGACCTTTTTAGGACGTTATAGTATTGATACTCTGTATGGTCACACTGAAGCAG 712
Query 467 TCCGGATTGTTTTTCTCTTAGCTTCTGCCAAGCTCGTTTTCACTTCTGGATATGATTCCA 526
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TCCGGACTGTTTTTCTCTTAGCTTCTGCCAAGCTCGTTTTCACTTCTGGATATGATTCCA 772
Query 527 TTGTTCGGATGTGGGACATGGAAGAAGGTTTGTCTATTGCAGCATCTAAACCTCTCGGTT 586
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 773 TTGTTCGGATGTGGGACATGGAAGAAGGCTTGTCTATTGCGGCATCTAAACCTCTCGGTT 832
Query 587 GCACTATTAGGGCACTCGCCGCTGATACAAAGCTGTTGGTAGCTGGCGGTACTGATGGAT 646
| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GTACGATTAGGGCACTTGCTGCTGATACAAAGCTGTTGGTAGCTGGCGGTACTGATGGAT 892
Query 647 TTATACATTGCTGGAAATCACTGGATGGTCTCCGGAACCTGTTTGATCTCACAGGTTTTC 706
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TCATTCATTGCTGGAAATCACTGGATGGTCTCCGGAACCTGTTTGATCTCACAGGTTTTC 952
Query 707 AGAAAGAGAAGACCGACTTTCGGCTATGGGGACACGAGGGTCCTATTACATCTCTTGCCC 766
||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 953 AGAAAGAGAAGACTGAGTTTCGGCTATGGGGACATGAGGGTCCTATTACATCTCTTGCCC 1012
Query 767 TGGACATGACAAGTATCTTTAGCGGTTCATGGGACATGTCTGTTCGTATATGGGATCGAT 826
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1013 TGGACATGACAAGTATCTTTAGCGGTTCATGGGATATGTCTGTTCGTATATGGGATCGAT 1072
Query 827 CTTCAATGAAGTGTGTCAAAACCTTGAGGCATAGTGATTGGGTTTGGGGCCTTGCACCTC 886
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1073 CTTCAATGAAGTGTGTCAAAACCTTGAGGCATAGTGATTGGGTTTGGGGACTTGCACCTC 1132
Query 887 ATGAAACCAGCCTCGCTAGCACGTCAGGTTCCGATGTATATATTTGGGACATTGACC-GT 945
||||||||| ||||||||||||||||||||| |||||||||||||||||| || | | ||
Sbjct 1133 ATGAAACCACCCTCGCTAGCACGTCAGGTTCTGATGTATATATTTGGGACGTT-AGCAGT 1191
Query 946 GAGACTCCACTGACGATCATACCTGATGCTCATGAGGGTACTACTTACTCTTTGGCAAGA 1005
||||||||| || ||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1192 GAGACTCCATTGGCGATCATCCCTGATGCTCATGAGGGTACCACTTACTCTTTGGCAAGA 1251
Query 1006 AGCCATACTGGGGATTTCCTGTTTACTGGCGGAGAAGATGGAGGGATTAAAATGTTTGAG 1065
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1252 AGCCATACTGGGGATTTCCTGTTTACTGGTGGAGAAGATGGAGGGATTAAAATGTTTGAG 1311
Query 1066 ATCAGAAGATACGGTAGTGAAACAAGCGTTGTACTCATATCTCAATGGATGCCCCACACT 1125
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1312 ATCAGAAGATACGGTAGTGAAACAAGCGTTGTACTTATATCTCAATGGATGCCTCACACT 1371
Query 1126 AGTCCTGTCTACTCTCTTTCTTTTGAGTTTCCCTGGCTTGTCTCAGCATCTGGTGACGGT 1185
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1372 AGTCCTGTCTACTCTCTTTCTTTTGAGTTTCCTTGGCTTGTCTCAGCATCCGGTGACGGT 1431
Query 1186 AAACTCGCACTAATCGACGTTAGGAAGTTGTTGAAGACTAACCGTCGTGCCTATTCCAGA 1245
||||||||||| |||||||||||||| |||| || ||||||||| |||||||||||| |
Sbjct 1432 AAACTCGCACTTATCGACGTTAGGAAACTGTTAAAAACTAACCGTTGTGCCTATTCCAAA 1491
Query 1246 AGAATTTCTTCGAGTACAGTGGAACCTCCACAAAGAATGCTGCACGGGTTCGGGTCAAAC 1305
|| |||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1492 AGGATTTCTTCGAGTACTGTGGAACCGCCACAACGAATGCTGCACGGGTTCGGGTCAAAC 1551
Query 1306 TTGTTCTCTGTGGATGTGGGTTGTGACCGTATAGTGTGTGGAGGTGAAGAAGGCATAGTC 1365
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1552 TTGTTCTCTGTGGACGTGGGTTATGACCGTATAGTGTGTGGAGGTGAAGAAGGCACAGTC 1611
Query 1366 CGGGTTTGGAACTTCACACAAGCGTTGGAGATAGAGCGAAGGGCTCGAGCTCTTAAAGGA 1425
||| | ||||||||||||||||| |||||||||||||||||| | |||||||| ||||||
Sbjct 1612 CGGATATGGAACTTCACACAAGCATTGGAGATAGAGCGAAGGACCCGAGCTCTGAAAGGA 1671
Query 1426 ATGAGGCTTGAGAATAGGATGAGACGAAGGAGAATGCAAATGGAGATGAATGCAAAGAGT 1485
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1672 ATGAGGCATGAGAATAGGATGAGACGAAGGAGAATGCAAATGGAGATGAACGCAAAGAAT 1731
Query 1486 GGAAGGCCTGACCAATGCTCCGTTGCTGCTCATAAGAACCCCATCAATGGAGATAGGAAC 1545
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1732 GGAAGGCCTGACCAATGCTCCATTGCTGCTCATAAGAACCCCATCAATGGAGAAAGGAAC 1791
Query 1546 CGAGCCTGGCATAGTAAACGAAGAGCAAGCGGGAAGGCGAAGGCCTAA 1593
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 CGAGCCTGGCATAGTAAACGAAGAGCAAGCGGGAAGGCGAAGGCCTAA 1839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78664254015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5