BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg894058 Length=1608 Score E Sequences producing significant alignments: (Bits) Value AT5G21900.1 | Symbols: | RNI-like superfamily protein | chr5:7... 1954 0.0 > AT5G21900.1 | Symbols: | RNI-like superfamily protein | chr5:7238197-7240482 FORWARD LENGTH=1821 Length=1821 Score = 1954 bits (1058), Expect = 0.0 Identities = 1317/1441 (91%), Gaps = 21/1441 (1%) Strand=Plus/Plus Query 180 TGATTATGAAGTTTCGAGAAATTATAAAGTTGCGAGAAC-TTTTGCTCTTGATTTGCATT 238 ||||||||||||| |||||||| ||||| ||||| ||| |||||||||||| ||||||| Sbjct 246 TGATTATGAAGTTAAGAGAAATTTTAAAGCTGCGA-AACATTTTGCTCTTGAATTGCATT 304 Query 239 CTGATCTCAAGATTGTTgaaaaaac------agaggaagaagaagaagtaataagagatg 292 | ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 305 CAGATCTCAAGATTGTTGAAAAAACGGAGGAAGAGGTAGAAGAAGAAGTAATAAGAGATG 364 Query 293 aagaaaaaagtgagtttcag-agagctaaagaatcgatcaagaagagaagagaagagaTC 351 |||| ||||||||||||| | | |||||||||||||||||||||||||||| |||||||| Sbjct 365 AAGATAAAAGTGAGTTTC-GAAAAGCTAAAGAATCGATCAAGAAGAGAAGACAAGAGATC 423 Query 352 TCTACAACAAGTGATATGGAGATAGATCCGATGACGGTACTAAGGAAAGCTCCTACGCTT 411 ||||||||||||||||||||||||||| | ||| |||| ||||||||||||| ||||| Sbjct 424 TCTACAACAAGTGATATGGAGATAGAT-C--TGAATGTACGAAGGAAAGCTCCTTCGCTT 480 Query 412 GTGGAGCTGAGTGCGAGAGTTCTTGCTCAGAATATTGTAGCTATCAAGTCATTGAAACTT 471 ||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| Sbjct 481 GTGGAGCTGAGTGCGAGAGTTCTTGCTCAGAATTTTTTAGCTATCAAGTCTTTGAAACTT 540 Query 472 GTTCCTGATCATTTGAGGAAGAAACTCTCGTATCTTGTTAGTGGTTTTGGCAAAGTCGAT 531 ||||||||||| ||||||||||| ||||||||||||||||||||||| || || ||||| Sbjct 541 GTTCCTGATCACTTGAGGAAGAAGCTCTCGTATCTTGTTAGTGGTTTAGGTGAATTCGAT 600 Query 532 ACACGTCTTATGGAGCTTTTGATTGAGGATTCTCCGAATGAGATTTGCGCGAAGAACTGT 591 |||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||| Sbjct 601 ACACGTCTTATGGAGCTTTTGATTGAAGATTCTCCGAGTGAGATTTGCGCTAAGAACTGT 660 Query 592 GTCGAATTACAGGAGGATGACTTGATTAAGATCCTCTGTGACTGTGACAGAGTTAGCTTG 651 ||| ||||| ||||||||||||| | |||||| ||||||||||||| |||||||||||| Sbjct 661 GTCCAATTAGTGGAGGATGACTTGGTAAAGATCTTCTGTGACTGTGATAGAGTTAGCTTG 720 Query 652 AAGGTGTTGATTCTTGATCTTTGCGGAAGATCCATTACGGATTACACGATAAGGGAGTTC 711 |||||||||||||||||||||||||||||||| || |||||||| ||||||| ||||| Sbjct 721 AAGGTGTTGATTCTTGATCTTTGCGGAAGATCGATGACGGATTATACGATAAACCAGTTC 780 Query 712 TTTAAACGCGCTCCTAACGGATTCCCGTCATTAACTACGCTATCTCTTCAAGGAGCGTTC 771 ||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 781 TTTAAACGCGCGCCTAACGGATTCCCGTCATTGACTACGTTATCTCTTCAAGGAGCGTTC 840 Query 772 TGTTTAACAGACATTGCATTGTTGTTGATATCGAGTTCATCTCCTCTGCTTCAGTTTATT 831 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 841 TGTTTAACAGACAATGCATTGTTGTTGATATCGAAATCATCTCCTCTGCTTCAGTATATT 900 Query 832 AACCTCACTGAATGCTCTCTTCTCACTT-TCCGCGCTTTGAAGATTCTTGCTGATAAGTT 890 |||||||||||||||||||||||||||| | || || |||| |||||||||||||||||| Sbjct 901 AACCTCACTGAATGCTCTCTTCTCACTTAT-CGTGCATTGAGGATTCTTGCTGATAAGTT 959 Query 891 TGGTTCCACTCTTAGAGGGCTTAGCATTGGTGGATGCCAAGGGATTAAATGGTATAAAGG 950 |||||| ||||||||||||||||| ||||||||||| |||||||||||| | ||||||| Sbjct 960 TGGTTCAACTCTTAGAGGGCTTAGTATTGGTGGATGTCAAGGGATTAAAAAGCATAAAGG 1019 Query 951 CTTTAGTAGCAGCCTATATAAGTTCGAGAAATTGAACTATCTTTCGGTTGCAGGACTCGA 1010 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1020 GTTTAGTAGCAGCCTGTATAAGTTCGAGAAATTGAACTATCTTTCGGTTGCGGGACTCGT 1079 Query 1011 TAGTGTTAATGATGGTGTTGTCAGAACG-TTCTTTATGTTCCGTAGCTCAAATCTCACTG 1069 |||||||||||||||||||||||||| | ||||||||||||||||| || | |||||||| Sbjct 1080 TAGTGTTAATGATGGTGTTGTCAGAA-GTTTCTTTATGTTCCGTAGTTCGATTCTCACTG 1138 Query 1070 ATCTATCTCTCGCTAATTGCAATGAGGTTACTGATGATTGCATTTGGCATATTGGGAGGT 1129 |||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| | Sbjct 1139 ATCTATCTCTCGCTAATTGCAATGAGGTGACTGATGAATGCATGTGGCATATTGGGAGAT 1198 Query 1130 ATTGTAAAAAGCTAGAAGCTCTTGACATCACAGACTTGGATAAATTGACTGATAAGGCAT 1189 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1199 ATTGTAAGAAGCTAGAAGCTCTTGACATCACAGACTTGGATAAATTGACTGATAAGTCAT 1258 Query 1190 TAGAGTTTATTACAGAGGGTTGCAAATATTTGAGATCACTCAAACTTACAAGTAACGGAT 1249 ||||||||||||| |||||||||| |||||||| |||||||||||||||||||||| ||| Sbjct 1259 TAGAGTTTATTACTGAGGGTTGCAGATATTTGAAATCACTCAAACTTACAAGTAACAGAT 1318 Query 1250 TTAGTGACGAAGGTATTGCCGCGTGTCTTGAAGTCTCGGGAGGTTCTCTTA-ACGAACTT 1308 ||||||||||| |||||||||||| |||||||||||||||||||||||||| | ||||| Sbjct 1319 TTAGTGACGAATGTATTGCCGCGTTTCTTGAAGTCTCGGGAGGTTCTCTTAGA-GAACTC 1377 Query 1309 TGCCTAAACAAAGTCCGAAATGTCGGTCCACATACTGCCTTTTCGCTTGCTGAAGCTTGC 1368 |||||||||||||||||| |||| |||||| | ||||| ||||||||||| ||| ||| Sbjct 1378 TGCCTAAACAAAGTCCGAGATGTTGGTCCAGAGACTGCTTTTTCGCTTGCCAAAGTTTGT 1437 Query 1369 AAGAGGTTACAATTTTTGGACCTCTCGTGGTGTCGAAGACTCACCCAAGAGGACCTAAGA 1428 |||| ||||||||| |||||||||||||||||||| ||||||| |||| ||||||||| Sbjct 1438 AAGATGTTACAATTCTTGGACCTCTCGTGGTGTCGGAGACTCAAAGAAGATGACCTAAGA 1497 Query 1429 CGAATTTTGAGATGCTGCTCGTCACTT-AGATCACTCAAGCTATTTGGATGGACACAGGT 1487 || |||||| | || |||||||||||| | |||||||||||||||||||||||| ||||| Sbjct 1498 CGGATTTTGCGTTGTTGCTCGTCACTTCA-ATCACTCAAGCTATTTGGATGGACGCAGGT 1556 Query 1488 GGATGATACATTTCTTGAAGAACTTTCAAGATCACACGTTCATATCACCGGACTGAAAAT 1547 ||| ||||||| |||||||||||||||||||||| |||||||||| |||||| ||||| | Sbjct 1557 GGAGGATACATATCTTGAAGAACTTTCAAGATCAGACGTTCATATTACCGGATTGAAACT 1616 Query 1548 GACTTCACTCTACGCTCACCTTGATAACTTTTACCCAAGTGTAGGTGCCAAGTTCTTCTG 1607 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1617 GACTTCACTCTATGCTCACCTTGATAACTTTTACCCAAGTGTAGGTGCCAAGTTCTTCTG 1676 Query 1608 A 1608 | Sbjct 1677 A 1677 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79417262190 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5