BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894058
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21900.1 | Symbols: | RNI-like superfamily protein | chr5:7... 1954 0.0
> AT5G21900.1 | Symbols: | RNI-like superfamily protein | chr5:7238197-7240482
FORWARD LENGTH=1821
Length=1821
Score = 1954 bits (1058), Expect = 0.0
Identities = 1317/1441 (91%), Gaps = 21/1441 (1%)
Strand=Plus/Plus
Query 180 TGATTATGAAGTTTCGAGAAATTATAAAGTTGCGAGAAC-TTTTGCTCTTGATTTGCATT 238
||||||||||||| |||||||| ||||| ||||| ||| |||||||||||| |||||||
Sbjct 246 TGATTATGAAGTTAAGAGAAATTTTAAAGCTGCGA-AACATTTTGCTCTTGAATTGCATT 304
Query 239 CTGATCTCAAGATTGTTgaaaaaac------agaggaagaagaagaagtaataagagatg 292
| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 305 CAGATCTCAAGATTGTTGAAAAAACGGAGGAAGAGGTAGAAGAAGAAGTAATAAGAGATG 364
Query 293 aagaaaaaagtgagtttcag-agagctaaagaatcgatcaagaagagaagagaagagaTC 351
|||| ||||||||||||| | | |||||||||||||||||||||||||||| ||||||||
Sbjct 365 AAGATAAAAGTGAGTTTC-GAAAAGCTAAAGAATCGATCAAGAAGAGAAGACAAGAGATC 423
Query 352 TCTACAACAAGTGATATGGAGATAGATCCGATGACGGTACTAAGGAAAGCTCCTACGCTT 411
||||||||||||||||||||||||||| | ||| |||| ||||||||||||| |||||
Sbjct 424 TCTACAACAAGTGATATGGAGATAGAT-C--TGAATGTACGAAGGAAAGCTCCTTCGCTT 480
Query 412 GTGGAGCTGAGTGCGAGAGTTCTTGCTCAGAATATTGTAGCTATCAAGTCATTGAAACTT 471
||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||
Sbjct 481 GTGGAGCTGAGTGCGAGAGTTCTTGCTCAGAATTTTTTAGCTATCAAGTCTTTGAAACTT 540
Query 472 GTTCCTGATCATTTGAGGAAGAAACTCTCGTATCTTGTTAGTGGTTTTGGCAAAGTCGAT 531
||||||||||| ||||||||||| ||||||||||||||||||||||| || || |||||
Sbjct 541 GTTCCTGATCACTTGAGGAAGAAGCTCTCGTATCTTGTTAGTGGTTTAGGTGAATTCGAT 600
Query 532 ACACGTCTTATGGAGCTTTTGATTGAGGATTCTCCGAATGAGATTTGCGCGAAGAACTGT 591
|||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||
Sbjct 601 ACACGTCTTATGGAGCTTTTGATTGAAGATTCTCCGAGTGAGATTTGCGCTAAGAACTGT 660
Query 592 GTCGAATTACAGGAGGATGACTTGATTAAGATCCTCTGTGACTGTGACAGAGTTAGCTTG 651
||| ||||| ||||||||||||| | |||||| ||||||||||||| ||||||||||||
Sbjct 661 GTCCAATTAGTGGAGGATGACTTGGTAAAGATCTTCTGTGACTGTGATAGAGTTAGCTTG 720
Query 652 AAGGTGTTGATTCTTGATCTTTGCGGAAGATCCATTACGGATTACACGATAAGGGAGTTC 711
|||||||||||||||||||||||||||||||| || |||||||| ||||||| |||||
Sbjct 721 AAGGTGTTGATTCTTGATCTTTGCGGAAGATCGATGACGGATTATACGATAAACCAGTTC 780
Query 712 TTTAAACGCGCTCCTAACGGATTCCCGTCATTAACTACGCTATCTCTTCAAGGAGCGTTC 771
||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 781 TTTAAACGCGCGCCTAACGGATTCCCGTCATTGACTACGTTATCTCTTCAAGGAGCGTTC 840
Query 772 TGTTTAACAGACATTGCATTGTTGTTGATATCGAGTTCATCTCCTCTGCTTCAGTTTATT 831
||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 841 TGTTTAACAGACAATGCATTGTTGTTGATATCGAAATCATCTCCTCTGCTTCAGTATATT 900
Query 832 AACCTCACTGAATGCTCTCTTCTCACTT-TCCGCGCTTTGAAGATTCTTGCTGATAAGTT 890
|||||||||||||||||||||||||||| | || || |||| ||||||||||||||||||
Sbjct 901 AACCTCACTGAATGCTCTCTTCTCACTTAT-CGTGCATTGAGGATTCTTGCTGATAAGTT 959
Query 891 TGGTTCCACTCTTAGAGGGCTTAGCATTGGTGGATGCCAAGGGATTAAATGGTATAAAGG 950
|||||| ||||||||||||||||| ||||||||||| |||||||||||| | |||||||
Sbjct 960 TGGTTCAACTCTTAGAGGGCTTAGTATTGGTGGATGTCAAGGGATTAAAAAGCATAAAGG 1019
Query 951 CTTTAGTAGCAGCCTATATAAGTTCGAGAAATTGAACTATCTTTCGGTTGCAGGACTCGA 1010
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1020 GTTTAGTAGCAGCCTGTATAAGTTCGAGAAATTGAACTATCTTTCGGTTGCGGGACTCGT 1079
Query 1011 TAGTGTTAATGATGGTGTTGTCAGAACG-TTCTTTATGTTCCGTAGCTCAAATCTCACTG 1069
|||||||||||||||||||||||||| | ||||||||||||||||| || | ||||||||
Sbjct 1080 TAGTGTTAATGATGGTGTTGTCAGAA-GTTTCTTTATGTTCCGTAGTTCGATTCTCACTG 1138
Query 1070 ATCTATCTCTCGCTAATTGCAATGAGGTTACTGATGATTGCATTTGGCATATTGGGAGGT 1129
|||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |
Sbjct 1139 ATCTATCTCTCGCTAATTGCAATGAGGTGACTGATGAATGCATGTGGCATATTGGGAGAT 1198
Query 1130 ATTGTAAAAAGCTAGAAGCTCTTGACATCACAGACTTGGATAAATTGACTGATAAGGCAT 1189
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1199 ATTGTAAGAAGCTAGAAGCTCTTGACATCACAGACTTGGATAAATTGACTGATAAGTCAT 1258
Query 1190 TAGAGTTTATTACAGAGGGTTGCAAATATTTGAGATCACTCAAACTTACAAGTAACGGAT 1249
||||||||||||| |||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 1259 TAGAGTTTATTACTGAGGGTTGCAGATATTTGAAATCACTCAAACTTACAAGTAACAGAT 1318
Query 1250 TTAGTGACGAAGGTATTGCCGCGTGTCTTGAAGTCTCGGGAGGTTCTCTTA-ACGAACTT 1308
||||||||||| |||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 1319 TTAGTGACGAATGTATTGCCGCGTTTCTTGAAGTCTCGGGAGGTTCTCTTAGA-GAACTC 1377
Query 1309 TGCCTAAACAAAGTCCGAAATGTCGGTCCACATACTGCCTTTTCGCTTGCTGAAGCTTGC 1368
|||||||||||||||||| |||| |||||| | ||||| ||||||||||| ||| |||
Sbjct 1378 TGCCTAAACAAAGTCCGAGATGTTGGTCCAGAGACTGCTTTTTCGCTTGCCAAAGTTTGT 1437
Query 1369 AAGAGGTTACAATTTTTGGACCTCTCGTGGTGTCGAAGACTCACCCAAGAGGACCTAAGA 1428
|||| ||||||||| |||||||||||||||||||| ||||||| |||| |||||||||
Sbjct 1438 AAGATGTTACAATTCTTGGACCTCTCGTGGTGTCGGAGACTCAAAGAAGATGACCTAAGA 1497
Query 1429 CGAATTTTGAGATGCTGCTCGTCACTT-AGATCACTCAAGCTATTTGGATGGACACAGGT 1487
|| |||||| | || |||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 1498 CGGATTTTGCGTTGTTGCTCGTCACTTCA-ATCACTCAAGCTATTTGGATGGACGCAGGT 1556
Query 1488 GGATGATACATTTCTTGAAGAACTTTCAAGATCACACGTTCATATCACCGGACTGAAAAT 1547
||| ||||||| |||||||||||||||||||||| |||||||||| |||||| ||||| |
Sbjct 1557 GGAGGATACATATCTTGAAGAACTTTCAAGATCAGACGTTCATATTACCGGATTGAAACT 1616
Query 1548 GACTTCACTCTACGCTCACCTTGATAACTTTTACCCAAGTGTAGGTGCCAAGTTCTTCTG 1607
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 GACTTCACTCTATGCTCACCTTGATAACTTTTACCCAAGTGTAGGTGCCAAGTTCTTCTG 1676
Query 1608 A 1608
|
Sbjct 1677 A 1677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79417262190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5