BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894063
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
AT5G21950.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1323 0.0
> AT5G21950.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:7253921-7255944 REVERSE LENGTH=1151
Length=1151
Score = 1323 bits (716), Expect = 0.0
Identities = 861/927 (93%), Gaps = 26/927 (3%)
Strand=Plus/Plus
Query 1 ATGGCTCCCTCGTTTCTAAGCGTCGCAAAATTCGTTGAGGCACTACTCCGCCGGAGATTC 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 79 ATGGCTCCCTCGTTTCTAAGCGTCGCAAGATTCGTTGAGGCACTACTCCGCCGGAGATTC 138
Query 61 TCTTCCGCTGGTCTCTCTTTACAAACGCTATCCATCGACTCCGAAACCACCATACAGTTC 120
|| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 139 TCCTCCGCTGGTCTCTCCTTACAAACCCTATCCATCGACTCCGAAACCACCATACAGTTC 198
Query 121 TGGGGACCACCACCGTCTTCAACGTCGGAAAATACACAAAAACCGTCGCTCCTCCTCCTC 180
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 199 TGGGGACCACCACCGTCTTCATCATCGGAAAATACACAAAAACCGTCGCTCCTCCTCCTC 258
Query 181 CACGGTTTTGGCCCTTCCGCTGTATGGCAATGGAGCCATCAGGTAAAGCCATTCTCCCAA 240
|| |||||||| |||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 259 CATGGTTTTGGACCTTCCGCTGTATGGCAATGGAGCCATCAGGTCAAGCCACTCTCTCAC 318
Query 241 TTCTTTCGTCTCTACGTCCCCGACCTTGTCTTCTTCGGTGGCTCCTCTTCCTCCGGCGAG 300
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 319 TTCTTTCGTCTCTACGTCCCCGACCTAGTCTTCTTCGGCGGCTCCTCTTCCTCCGGTGAG 378
Query 301 AACCGGTCGGAGATGTTTCAAGCGTTGTGCATGGGGAAGCTTATGGAGAAGCTCGAGGTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 AACCGGTCGGAGATGTTTCAAGCGTTGTGCATGGGGAAGCTTATGGAGAAGCTCGAGGTC 438
Query 361 GAGAGGTTCAGCGTCATTGGTACGAGCTACGGC-GGTTTCGTGGCGTATAACATGGCGAA 419
||||| ||||| ||| |||| |||||||||||| ||||| ||||||||||| ||||||||
Sbjct 439 GAGAGATTCAGTGTCGTTGGGACGAGCTACGGCGGGTTT-GTGGCGTATAATATGGCGAA 497
Query 420 AATGTTTCCGGAGAAAGTGGAGAAGGTGGTGCTTGCGAGCTCCGGTGTTAATTTGCGGCG 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 498 AATGTTTCCGGAGAAAGTGGAGAAGGTGGTGCTTGCGAGCTCCGGTGTTAATTTGCGGAG 557
Query 480 GAGTGACAACGAGGCATTTATCGCGAGGGCTAAATGCCACGGTATCAAGGAGGTGATGCT 539
||||||||||||||| |||||||| |||||||| |||||| |||||||||||||||||||
Sbjct 558 GAGTGACAACGAGGCGTTTATCGCTAGGGCTAAGTGCCACCGTATCAAGGAGGTGATGCT 617
Query 540 TCCTGCTTCTGCGACAGATCTTAGGAGAACCTCTGGGATGGTTTCTTCTAAGAGACTCGA 599
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 618 TCCTGCTTCTGCAACAGATCTTAGGAGATTCTCTGGGATGGTTTCTTCTAAGAGACTCGA 677
Query 600 TTATGTCCCAGATTTTGTCTTGAACGACTTTTGCCAG-----G-A-----AAAAGC-AGA 647
||||||||||||||||||||||||||||||||||||| | | ||||| |||
Sbjct 678 TTATGTCCCAGATTTTGTCTTGAACGACTTTTGCCAGAAAATGTATTCGGAAAAGAGAGA 737
Query 648 --A-----C-----TTCTCGAGGGGCTGAGTATTGGGAAGGATGACAAAACAAACGTTTC 695
| | ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 738 GGAAAAAGCAGAACTTCTCGAGGGGCTGAGTATTGGGAAGGATGACAAAACCAACGTTTC 797
Query 696 TCCAATTCAACAGGATGTAATGCTGATATGGGGGGAGCAAGATCAAGTTTTTCCTTTAAA 755
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 798 TCCAATTCAACAGGATGTAATGCTGATATGGGGTGAGCAAGATCAAGTTTTTCCTTTAAA 857
Query 756 AATGGCACATGACCTCAAAGAGATGTTGGGGAGTAAGACGACGCTAAAAATTATACAAAA 815
|||||| ||||||||||||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct 858 AATGGCCCATGACCTCAAAGAGATGTTGGGGACTAAGGCGACGCTAAAAGTTATACAAAA 917
Query 816 GACATCACATATACCTCAAACGGAGAAGTCCAAAGAATTCAATGGCATTGTCATGTCTTT 875
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 918 GACATCACATATACCTCAAACGGAGAAGTCCAAAGAATTCAATGGCTTTGTCATGTCTTT 977
Query 876 CTTATTACCTACATCTCCTTCACTATA 902
|||||||||| | ||||| |||| |||
Sbjct 978 CTTATTACCTCCTTCTCCATCACCATA 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44105581066
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5