BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894080
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22100.1 | Symbols: | RNA cyclase family protein | chr5:732... 1748 0.0
> AT5G22100.1 | Symbols: | RNA cyclase family protein | chr5:7328961-7330930
FORWARD LENGTH=1394
Length=1394
Score = 1748 bits (946), Expect = 0.0
Identities = 1066/1125 (95%), Gaps = 4/1125 (0%)
Strand=Plus/Plus
Query 12 GATGAAGATGAGGATGAAGGGAAGCCAAAACTTGAGGCAAAGACTGCTTCTTTCGACTCT 71
||||| || || ||||||||||||||||| ||| || |||||||| |||||||| || ||
Sbjct 60 GATGATGAAGAAGATGAAGGGAAGCCAAAGCTTTAGACAAAGACTTCTTCTTTCAACACT 119
Query 72 TTCTTCAACACCTATCGT-GATTGATGATATTCGTGCCGACGAGATGATTCCTGGTCTCC 130
|||||||||||||||| | ||||||||| |||||||||||||| | ||||||||||||||
Sbjct 120 TTCTTCAACACCTATC-TCGATTGATGAGATTCGTGCCGACGAAACGATTCCTGGTCTCC 178
Query 131 GCCCTCACGAGGTTAATCTTCTCCGCCTCTTAGAAATTGTCACCGATGACGCATTCGTTG 190
| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 179 GACCTCACGAGGTTAATCTTCTCCGCCTCTTAGAAATTGTCACCGACGACGCCGTCGTTG 238
Query 191 AGGTTAACGAGACCGGGACTCAATTAAAGTATAAGCCTGGAATTATAATGGGAGGGAAGA 250
| |||||||||||||||||| ||||||||| |||||||||| |||| ||||||||||||
Sbjct 239 ATATTAACGAGACCGGGACTCGATTAAAGTACAAGCCTGGAACTATAGTGGGAGGGAAGA 298
Query 251 ACTTGGTTCACACCTGCTCGCTGAGTCGATCAATTGGCTATTATCTTGAGCCATTGCTTT 310
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 299 ACTTGGTTCACAGCTGCTCGCTGAGTCGATCCATTGGCTATTATCTTGAGCCATTGCTTT 358
Query 311 TGTTGGGATTGTTTGGAAAGAAGCCTCTTTCGATTAGGCTCAAAGGAATTACAAATGATC 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGTTGGGATTGTTTGGAAAGAAGCCTCTTTCGATTAGGCTCAAAGGAATTACAAATGATC 418
Query 371 CAAGAGACCCGAGCGTTGACACATTCCGTTCCACTACCTTGAATATCATAAAGCGTTTTG 430
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CAAGAGACGCTAGCGTTGACACATTCCGTTCCACTACCTTGAATATCATAAAGCGTTTTG 478
Query 431 GAGTCCCTGCAGAAGATTTGGAGCTTAAAATTGAGGCCCGTGGAGTAGCTCCAAATGGAG 490
||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||
Sbjct 479 GAGTCCCTGCAGAAGATTTGGAGCTGAAAATCGAAGCCCGTGGAGTAGCTCCGAATGGAG 538
Query 491 GTGGAGAAATTCTCTTAACTGTGCCAAATGTTAAGACTCTAAGTGCGGTTCATTGGGTAG 550
|||||||| |||||||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct 539 GTGGAGAAGTTCTCTTAACAGTTCCAAATATTAAGACTCTAAGTGCGGTTCATTGGGTAG 598
Query 551 AAGAAGGAATGGTGAAGAAGATACGTGGTATAACTTTCTCTACAAGAGTGACTAGTGACT 610
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 599 AAGAAGGAATGGTGAAGAAGATACGTGGTACAACTTTCTCTACAAGAGTGACTAGTGACT 658
Query 611 TTGAACATTCCATGAGATTTGCAGCTCGTGGAATCTTTAACAATCTCCTGCCTGATGTTC 670
||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 659 TTGAACATTCCATGAGATTCGCAGCTCGTGGTATCTTTAACAATCTCTTGCCTGATGTTC 718
Query 671 ACATTTTCCAAGATCACAGAGTTGGCGCTCAGGCTGGAAAATCTCCTGGATACGGAATAT 730
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 719 ACATTTTCCAAGATCACAGAGCTGGCGCTCAGGCTGGAAAATCTCCTGGATACGGAATAT 778
Query 731 CATTGGTAGCAGAAACAACCACAGGGTGTTACATGTCTGCAGATACAACAGTGTCTTGTG 790
|||||| |||||||||||| ||||| |||| ||| |||||||||||||||||||||||||
Sbjct 779 CATTGGCAGCAGAAACAACTACAGGATGTTTCATCTCTGCAGATACAACAGTGTCTTGTG 838
Query 791 AAAGACCAGACGAAACTGGAGAGCTCGATGTAGAGAAGAAAGAGAGATTGCCAGCAGAAG 850
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 839 AAAGACCAGACGAAACTGGAGAGCTCGATGTAGAGAAGAAAGAGAGATCGCCAGCAGAAG 898
Query 851 ACACTGGAGTTGAAGTAGCTTCATGGCTTCTTCAAGAGATTGAAAAAGGTGGAGTTGTTG 910
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACACAGGAGTTGAAGTAGCTTCATGGCTTCTTCAAGAGATTGAAAAAGGTGGAGTTGTTG 958
Query 911 ATTCAACACACCAGGGATTGTTGTTTCTACTGTGCGCGTTATCTGAACAAGATGTGTCAA 970
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 959 ATTCAACACACCAGGGATTGTTGTTTCTACTGTGTGCGTTATCTGAACAAGACGTGTCAA 1018
Query 971 AGGTTCGAGTTGGAACATTATCTCCATATGCAGTGGAGACGTTGAGGAACAT-AAGGGAG 1029
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1019 AGGTTCGAGTTGGAACATTATCTCCATATGCAGTGGAGACGTTGAGGAACATTAAGG-AG 1077
Query 1030 TTTCTTGGAGTTAAGTTTAACATCAAACCTGATCCATTGACAGGGACTGTTATACTCAAG 1089
||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1078 TTTCTGGGAGTTAAGTTTGCCATCAAACCTGATCCATTGACTGGGACTGTTATACTCAAG 1137
Query 1090 TGCACCGGAAGTGGCTTAATTAACCTCTCCAGAAAGCTGTCTTGA 1134
|| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 1138 TGTACTGGAAGTGGCTTAATTAACCTCTCCAGAAAGCTCTCTTGA 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5