BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894082
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22120.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1664 0.0
> AT5G22120.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured
cell; Has 30201 Blast hits to 17322 proteins in 780
species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink). | chr5:7334378-7336814 REVERSE LENGTH=1445
Length=1445
Score = 1664 bits (901), Expect = 0.0
Identities = 1080/1164 (93%), Gaps = 21/1164 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAACAGACGGCC-AA--ATGAAGAAGGAAGAATAAGTGAACCAAATTGGAGCGAG 57
|||||||||| |||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 60 ATGGAGAACACACGGCCAAACGAAGAAGAAGGAAGAATAAGTGAACCAAATTGGAGCGAA 119
Query 58 CGCGTGGAAGATCTCGTAGCAGCCGGCGACGTCACGGCGGCGATCTCGTTTCTCGAGTCT 117
|| ||||| |||||||| | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 120 CGAGTGGAGGATCTCGTGGTAGCCGGCGACGTCACGGCGGCGATCTCCTTTCTCGAGTCT 179
Query 118 TTGGAGACCAATCTTCAGTCACGATTGGGTTCTTCCTCCTCCGGCGAGAGAACAGAGTTT 177
||||||||||||||||| || || || |||||||||||||||||||||||||| ||||||
Sbjct 180 TTGGAGACCAATCTTCAATCGCGGTTAGGTTCTTCCTCCTCCGGCGAGAGAACGGAGTTT 239
Query 178 GGG-TTGCAATTAGCAGCCGCTCTTACGCAATTGGCGGATCTCTACTCTTCTCAGGGACT 236
||| || |||||| | |||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 240 GGGCTT-CAATTATCCGCCGCTCTTACGCAGTTGGCGGATCTCTACTCTTCTGAGGGACT 298
Query 237 TTCCCTAAAATCCGATGAGCTTCGAACTCGTTCTTCCCTCATTAAGCAACGAGCGTTGGA 296
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 299 TTCCCTTAAATCCGATGAGCTTCGAACTCGCTCTTCCCTCATTAAGCAACGAGCGTTGGA 358
Query 297 TTGTGATCGTGCTTCTTCAAG-AGATTCCGGCGATGTAGAGAATCAAAGTATTGCTTCCA 355
|||||||| ||| |||||||| || ||||||| |||||||||||||| | |||||||||
Sbjct 359 TTGTGATCTTGCCTCTTCAAGAAG-TTCCGGCAATGTAGAGAATCAATCTGTTGCTTCCA 417
Query 356 ATGGACTCAAGTCTGACCCAAATGTCTC-ACCTGCTGATGGTTATAAAGGGAAAACAAAG 414
||||||||||||||||||||||||||| | || ||||| | || |||||||| ||
Sbjct 418 GTGGACTCAAGTCTGACCCAAATGTCTCAAGCT-TTGATGCTGAT---GGGAAAACGGAG 473
Query 415 GATTCCACAAACGTACCTAGCAATAATTCAGCTGCTCATGATTTTTCAGATGATGATTGG 474
|||| | |||| ||| |||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 474 GATT-C-CAAA-GTATCTAGCAGTAATTCAGCTGCTCATGATTCTTCAGATGATGATTGG 530
Query 475 GAAGCTCTTGCAGATCTTGAACCGAGTAAATTACTCCCCGTGGAAGAGTTGCCTGAAATA 534
||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 531 GAAGCTCTTGCAGATGTTGAACCGAGTAAGTTACTCCCCGTAGAAGAGTTGCCTGAAATA 590
Query 535 TCAAAGCTTTTGGTTGAAGAACCTAAACTTGAAGGACCTAAGAGACGTGGAAGAGGAACG 594
|||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||||
Sbjct 591 TCAAAGCTTTCGGTTGAAGAACCTAAAGTTCAAGGACCTAAGAGACGTGGAAGGGGAACG 650
Query 595 TTTACTTATAAGAGGGATGCGATGTATAGTGATCGAGATTTCTCTGAGTCAAGG-TT--T 651
|||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||| || |
Sbjct 651 TTTACTTATAAGAGTGATGCAATGTACAGTGATCGAGATTTCTCTGAGTCGAGGTTTGAT 710
Query 652 GATGATTCAGAAGATAACGATTTATCTCGTGATTCAGAGAAGAATGATGAATCACTGAAA 711
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 711 GATGATTCAGAAGATAACGATTTATCTCGTGAGTCAGAGAAGACTGATGAATCACTGAAA 770
Query 712 TCCAAGTATGGCACACGCCATGTCCTCGTACTTGCTGATTTTTCTCCAAGTTTGAGAACT 771
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 771 TCCAAGTATGGCACACGCCATGTCCTCGTACTTGCTGGTTTTTCTCCAAGTTTGAGAACT 830
Query 772 GCTGATTTGGAGAAGCTATTTAAAGACTTCAAAGATAGTGGATTTATCATTCGTTGGGTC 831
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 ACTGAATTGGAGAAGCTATTTAAAGACTTCAAAGATAGTGGATTTATCATTCGTTGGGTC 890
Query 832 AATGATACAACAGCACTTGCAGTCTTCAAAACCCCTGCAGCTGCGCTAGAGGCTTGCAAC 891
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 891 AATGATACAACAGCACTTGCAGTCTTCAAAACCCCTTCAGCTGCTCTAGAGGCTTGCAAG 950
Query 892 CATGTTCAATGTTCATTCACCATACGTGTTCTCGATGATCACGATTCTCTTTTGGGCTCG 951
|||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||
Sbjct 951 CATGTTCAATGTTCATTCACAATACGTGTACTCGATGATAACGATTCTCTTTTGGGCTCA 1010
Query 952 ATATCTGGAAAAGATTTGGAACCGCCGTCTCAAAGACCAAAGACATCAGCGAGAACAGCT 1011
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1011 ATTTCTGGAAAAGATTTGGAACCGCCGTCTCAAAGACCAAAGACATCAGCGAAAACAGCT 1070
Query 1012 CAACGGTTGATTGCTCACAGTATGGGATTGAAGCTACCTGCTTCTGGATTCGGGTCTAAA 1071
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1071 CAACGGTTGATTGCTCACAGCATGGGATTGAAGCTACCGGCTTCTGGATTCGGGTCTAAA 1130
Query 1072 GAGCTACGAGACCAAGAAGCTGCCCGAAAAAACCGGATTGTCTCGAGACAGAAACAACGG 1131
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1131 GAGC---GAGACCAAGAAGCTGCCCGGAAAAACCGGATTGTCTCGAGACAGAAACAACGG 1187
Query 1132 GAAGATGCTTGGGGAGATGACTGA 1155
||||||||||||||||||||||||
Sbjct 1188 GAAGATGCTTGGGGAGATGACTGA 1211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56676415305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5