BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894085
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22150.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1365 0.0
AT5G22160.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 453 1e-126
> AT5G22150.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G22160.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:7342567-7345956 FORWARD LENGTH=993
Length=993
Score = 1365 bits (739), Expect = 0.0
Identities = 918/1002 (92%), Gaps = 21/1002 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTTCCAAATCAATCCTTACAACGAATATCCAATTCCACC-AACCTCGGCCAC--T 57
||| ||||||||| |||| ||||||||||||||| ||||||||| | | || || |
Sbjct 1 ATGACTTTCCAAACCAATTCTTACAACGAATATCTAATTCCACCGTA-CGCGTCCTCGGA 59
Query 58 CCT-CCTCCTCCTCGTAGATGGTGGTCACGACCAATAGTGACTA-TGCCGCCAACGAATG 115
| | ||||||| |||||||||||||||||| ||||||||||| | | |||||||| ||||
Sbjct 60 CATGCCTCCTCGTCGTAGATGGTGGTCACGTCCAATAGTGAC-ACTACCGCCAACAAATG 118
Query 116 GTCGTAAAGCCACATGTATGGAAACTACGGTTTGCGT-TACACCTTTCTGCGCCGCAATA 174
|||||| |||||| |||| |||||||||||||||| | || |||||| |||| |||||||
Sbjct 119 GTCGTAGAGCCACTTGTAAGGAAACTACGGTTTGC-TGTATACCTTTTTGCGGCGCAATA 177
Query 175 TTCACCATCATCGCCGT-ATGTGTATATCTCTTTCACTTCGTCGACAATGCTCACTGCGA 233
||||||||||||||||| ||| |||||||||||||||||||||||||||||||| || ||
Sbjct 178 TTCACCATCATCGCCGTAATG-GTATATCTCTTTCACTTCGTCGACAATGCTCAATGTGA 236
Query 234 CGCCAAATTCGTCATCCAATCCATCGCCGTCTCTCCATCCTCCGCCACATGGCACGTTGA 293
||||||||||| |||||||||||||||||||||| | |||| | ||| |||||||||||
Sbjct 237 CGCCAAATTCGCCATCCAATCCATCGCCGTCTCT-C--CCTCAGACACTTGGCACGTTGA 293
Query 294 TTTTCTCGTCAAAAACCCTAGCCCTAGGTTTGCTATCTACTACAAAGGCGATGAAACTGA 353
||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||
Sbjct 294 TTTTCTCGTCAAAAACCCTAGCCCTAGGTTTTCTATCTACTACGAAGGCGATGAGACTGA 353
Query 354 CGTGAGTCTCGGT-CTCTTAAGCGCTGCCGTTTTAAATACTTCTCACGAACGTAAGTCTC 412
|||||||||||| | |||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 354 AGTGAGTCTCGGTAC-CTTAAGCGCTGCCGTTTTGAATACTTCTCATGAACGTAAGTCGC 412
Query 413 CAAGTCACACGGCTTTCTCAGTGGATTTCCTTGCGGAGGGTAATCCAAATGATGCCGTTT 472
||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||
Sbjct 413 CAAGTCACACGGCTTTCTCAGTGGATTTCGTTGCGGAGGGTAATCCAAATGACGTCGTTT 472
Query 473 CCGAACAATTAGATATCAAATTAAGGGCTAAGCATAAGAGTTACGGAGACGACTATGATA 532
|||||||||||||| |||||||||||| || |||||||||||||||||| |||||||||
Sbjct 473 CCGAACAATTAGATGTCAAATTAAGGGGTACGCATAAGAGTTACGGAGAAAACTATGATA 532
Query 533 ACGCTGGACATATTGATCTTTTTGCCAATTCCGTCTCCGTCTCAAACGCAAACGCAAACG 592
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 533 ACGCTGGACATATTGATCTTTTTACCAATTCCGTCTCCGTCTCAAATGCAAACGCAAACG 592
Query 593 TTTCGGCCGCTGATTGGACGATCGGTTTCGTTGCGAGGAGTCCAGTCACCGGCTGTGAAG 652
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 593 TTTCAGCCGCTGATTGGACGATTGGTTTCGTTGCGAGGAGTCCAGTCACCGGCTGTGAAG 652
Query 653 TCTCTATTCATACACTCAATTCGCGTTTACTCCGTGGCAGCGAAGTTATCTCCAAATCAT 712
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 653 TCTCTATTCATACACTCAATTCGCGTTTACTCCGAGGTAGTGAAGTTATCTCCAAATCAT 712
Query 713 CGTC-TCCGTC-CG-CGGGTTATTTCGTCACCGGAGACAAAACAGAAGTCGTTTTCGAGA 769
| || ||| | || |||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 713 CATCGTCCCCCTCGTCGGGTTATTTCGTCACCGGAAACAAAACAGACGTCGTTTTCGAGA 772
Query 770 AGGTGGTTATGCCGAAAGTTATTGGCGACGTGATTTGGGATTCTCGAGTTGAGATTATGT 829
||||||||||||||||||||||||||||||| |||||| || |||| |||||||||||||
Sbjct 773 AGGTGGTTATGCCGAAAGTTATTGGCGACGTTATTTGGAATGCTCGGGTTGAGATTATGT 832
Query 830 TTGCGATGAATACAAATGCTAGATATTTAAATGGTTTTTTGATGGCGGCTTGTCCT-GCT 888
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 833 TTGCGATGAATACAGATGTTAGATATTTAAATGGTTTTTTGATGGCGGCTTGTCCTCG-T 891
Query 889 ATTCCGGTGAAATTTACGACGGATCAGGCGGGGAAGGTCATGGGATCGTTGCTTGGAAAT 948
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 892 ATTCCGGTGAAATTCACGACGGATCAGGCGGGGAAGGTCACGGGATCGTTGCTTGGAAAT 951
Query 949 GTGAAACGGTGTGATTATATATTCCAGAAACAATTGGCTTAA 990
||||||||||||||||||||||||||||| || |||||||||
Sbjct 952 GTGAAACGGTGTGATTATATATTCCAGAACCATTTGGCTTAA 993
> AT5G22160.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G22150.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:7346944-7349255 FORWARD LENGTH=1062
Length=1062
Score = 453 bits (245), Expect = 1e-126
Identities = 429/516 (83%), Gaps = 20/516 (4%)
Strand=Plus/Plus
Query 47 CCTCGGCCA---CTCCTCCTCCTCCTC--G-TAGATGGTGGTCACGACCAATAGTGACTA 100
||||||||| ||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 11 CCTCGGCCATTCCTCCTCCTCCTCCTCGTGTTGGATGGTGGTCACGACCAATAGTGACCG 70
Query 101 TGCCGCCAACG-AATGGTCGTAAAGCCACATGTATGGAAACTACGGTTTGCGTTACA-CC 158
||||| || | |||| |||| || |||| || | ||||||||| |||||| ||||| ||
Sbjct 71 TGCCGTTAA-GTAATGATCGTGAACCCACTTGCAAGGAAACTACTGTTTGCCTTACACCC 129
Query 159 TTTCTGCGCC-GCAATATTCACCATCATCGCCGTATGTGTATAT-CTCTTTCACTTCGTC 216
| | |||||| || | ||||||||| |||| |||| | ||| | |||||||| |||||
Sbjct 130 TGT-TGCGCCGGC-CTTTTCACCATCGTCGCTGTATATTTAT-TGATCTTTCACGTCGTC 186
Query 217 GACAATGCTCACTGCGACGCCAAATTCGT-CATCCAATCCATCGCCGTCTCTCCATCCTC 275
| |||||||||||| ||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 187 AATAATGCTCACTGCCACGCCAAATTC-TCCATCCAATCCATCGCCGTCTCTCCCTCCTC 245
Query 276 CGCCACATGGCACGTTGATTTTCTCGTCAAAAACCCTAGC-CCTAGGT-TTGCTATCTAC 333
|||||| |||||||| ||||| |||||||||||||||||| || |||| | ||||||||
Sbjct 246 CGCCACGTGGCACGTGGATTTCCTCGTCAAAAACCCTAGCTCC-AGGTACT-CTATCTAC 303
Query 334 TACAAAGGCGATGAAACTGACGTGAGTCTCGGTCTCTTAAGCGCTGCCGTTTTAAATACT 393
||| | ||||||||||| ||||||||| |||| | ||| ||||||||||||| |||||
Sbjct 304 TACGGACCCGATGAAACTGCCGTGAGTCTTGGTCCCGTAAACGCTGCCGTTTTAGATACT 363
Query 394 TCTCACGAACGTAAGTCTCCAAGTCACACGGCTTTCTCAGTGGATTTCCTTGCGGAGGGT 453
| ||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||
Sbjct 364 TTTCACGAACGTAAGTCTCGAAGTCACACGGCTTTCTCAGTGGATTTCATTGCCGAGGGT 423
Query 454 AATCCAAATGATGCCGTTTCCGAACAATTAGATATCAAATTAAGGGCTAAGCATAAGAGT 513
|| || || | | ||||| | || ||||| || ||||||||| | | || ||||||| |
Sbjct 424 AACCCTAACGGCGTCGTTTTCAAAGAATTATATGTCAAATTAAAGACGAAACATAAGATT 483
Query 514 TACGGAGACGACTATGATAACGCTGGACATATTGAT 549
|||||| | | || || | | |||||||||||||||
Sbjct 484 TACGGAAATGTCTTTGGTTATGCTGGACATATTGAT 519
Score = 335 bits (181), Expect = 5e-91
Identities = 340/415 (82%), Gaps = 17/415 (4%)
Strand=Plus/Plus
Query 581 CAAACGCAAACGTTTCGGCCGCTGATTGGACGATCGGTTTCGTTGCGAGGAGTCCAG-TC 639
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
Sbjct 626 CAAACGCAAACGTTTCAACCGCTGATTGGACGATCGGTTTCGTTGCGAAGAGTCCAAAT- 684
Query 640 ACCGGCTGTGAAGTCTCTATTCATACACTCAATTCGCGTTTACTCCGTGGCAGCGAAGTT 699
||||||||| || ||||| | ||| |||||||| ||||||||||||| ||| | ||||||
Sbjct 685 ACCGGCTGTAAAATCTCTCTACATCCACTCAATGCGCGTTTACTCCGAGGCGGTGAAGTT 744
Query 700 ATCTCCAAATCATCGTCTC-CGTCCG-CGGGTTATTTCGTCA-CCGG---AGACAAAACA 753
|||||||||||| | ||| | || | | | ||||||||| | |||| ||||||| ||
Sbjct 745 ATCTCCAAATCAGCATCTTAC-TC-GTCTGATTATTTCGT-ATCCGGCCGAGACAAACCA 801
Query 754 GAAGTCGTTTTCGAGAAGGTGGTTATGCCGAAAGTTATTGGCGACGTGATTTGGGATTCT 813
|| ||| |||||||||||||||||| |||| |||||||||||||||| |||||| || ||
Sbjct 802 GATGTCCTTTTCGAGAAGGTGGTTAAGCCGGAAGTTATTGGCGACGTTATTTGGCAT-CT 860
Query 814 -CGAGTTGAGATTATGTTTGCGATGAATACAAATGCTAGATATTTAAATGGTTTTTTGAT 872
||||||||| || ||||||| ||| | || ||| | || ||| || |||||||| ||
Sbjct 861 TCGAGTTGAGGTTTTGTTTGCAATGGACACCGATGTTTCATGTTTTAACGGTTTTTTAAT 920
Query 873 GGCGGCTTGTCCTGCTATTCCGGTGAAATTTACGACGGATCAGGCGGGGAAGGTCATGGG 932
|| | |||||| | |||| ||||||| || |||||||||| ||| ||||||| |||||
Sbjct 921 CGCCGTTTGTCCCGATATTGCGGTGAAGTTCACGACGGATCCGGCAGGGAAGGGGATGGG 980
Query 933 ATCGTTGCTTGGAAATGTGAAACGGTGTGATTAT-ATATTCCAG-AAACAATTGG 985
||||||||||||| || ||| | |||| || ||| | ||||| | ||| ||||||
Sbjct 981 ATCGTTGCTTGGACATATGAGATGGTGCGACTATGA-ATTCCGGGAAA-AATTGG 1033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48475951855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5